Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1600

Experiment: KB with Nalidixic 12.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1599 and Psyr_1600 are separated by 105 nucleotidesPsyr_1600 and Psyr_1601 are separated by 19 nucleotidesPsyr_1601 and Psyr_1602 are separated by 84 nucleotides Psyr_1599: Psyr_1599 - C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A, at 1,797,634 to 1,799,748 _1599 Psyr_1600: Psyr_1600 - Zinc-containing alcohol dehydrogenase superfamily, at 1,799,854 to 1,800,816 _1600 Psyr_1601: Psyr_1601 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 1,800,836 to 1,801,489 _1601 Psyr_1602: Psyr_1602 - ABC transporter, at 1,801,574 to 1,802,563 _1602 Position (kb) 1799 1800 1801Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1799.027 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.027 kb on + strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.028 kb on - strand, within Psyr_1599at 1799.069 kb on + strand, within Psyr_1599at 1799.069 kb on + strand, within Psyr_1599at 1799.070 kb on + strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.070 kb on - strand, within Psyr_1599at 1799.082 kb on + strand, within Psyr_1599at 1799.082 kb on + strand, within Psyr_1599at 1799.083 kb on - strand, within Psyr_1599at 1799.083 kb on - strand, within Psyr_1599at 1799.084 kb on - strand, within Psyr_1599at 1799.124 kb on + strand, within Psyr_1599at 1799.124 kb on + strand, within Psyr_1599at 1799.125 kb on - strand, within Psyr_1599at 1799.125 kb on - strand, within Psyr_1599at 1799.126 kb on + strand, within Psyr_1599at 1799.286 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.372 kb on + strand, within Psyr_1599at 1799.373 kb on - strand, within Psyr_1599at 1799.373 kb on - strand, within Psyr_1599at 1799.373 kb on - strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.468 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.498 kb on + strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.499 kb on - strand, within Psyr_1599at 1799.507 kb on + strand, within Psyr_1599at 1799.507 kb on + strand, within Psyr_1599at 1799.507 kb on + strand, within Psyr_1599at 1799.508 kb on - strand, within Psyr_1599at 1799.512 kb on - strand, within Psyr_1599at 1799.549 kb on + strandat 1799.549 kb on + strandat 1799.549 kb on + strandat 1799.550 kb on - strandat 1799.643 kb on + strandat 1799.644 kb on - strandat 1799.704 kb on + strandat 1799.705 kb on - strandat 1799.705 kb on - strandat 1799.748 kb on + strandat 1799.749 kb on - strandat 1799.749 kb on - strandat 1799.749 kb on - strandat 1799.752 kb on - strandat 1799.842 kb on + strandat 1799.842 kb on + strandat 1799.930 kb on + strandat 1799.930 kb on + strandat 1799.930 kb on + strandat 1799.931 kb on - strandat 1799.931 kb on - strandat 1799.934 kb on + strandat 1799.934 kb on + strandat 1799.935 kb on - strandat 1799.935 kb on - strandat 1799.935 kb on - strandat 1799.935 kb on - strandat 1799.976 kb on - strand, within Psyr_1600at 1799.992 kb on + strand, within Psyr_1600at 1799.992 kb on + strand, within Psyr_1600at 1800.208 kb on + strand, within Psyr_1600at 1800.208 kb on + strand, within Psyr_1600at 1800.208 kb on + strand, within Psyr_1600at 1800.373 kb on + strand, within Psyr_1600at 1800.374 kb on - strand, within Psyr_1600at 1800.481 kb on + strand, within Psyr_1600at 1800.497 kb on + strand, within Psyr_1600at 1800.498 kb on - strand, within Psyr_1600at 1800.498 kb on - strand, within Psyr_1600at 1800.768 kb on + strandat 1800.885 kb on - strandat 1801.221 kb on + strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.222 kb on - strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.320 kb on + strand, within Psyr_1601at 1801.321 kb on - strand, within Psyr_1601at 1801.321 kb on - strand, within Psyr_1601at 1801.350 kb on + strand, within Psyr_1601at 1801.351 kb on - strand, within Psyr_1601at 1801.498 kb on - strandat 1801.514 kb on - strandat 1801.518 kb on + strandat 1801.616 kb on + strandat 1801.616 kb on + strandat 1801.616 kb on + strandat 1801.617 kb on - strandat 1801.661 kb on + strandat 1801.662 kb on - strandat 1801.662 kb on - strandat 1801.736 kb on + strand, within Psyr_1602at 1801.737 kb on - strand, within Psyr_1602

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
remove
1,799,027 + Psyr_1599 0.66 -1.0
1,799,027 + Psyr_1599 0.66 -1.3
1,799,027 + Psyr_1599 0.66 -2.3
1,799,027 + Psyr_1599 0.66 +0.3
1,799,028 - Psyr_1599 0.66 -1.9
1,799,028 - Psyr_1599 0.66 -1.1
1,799,028 - Psyr_1599 0.66 -0.7
1,799,028 - Psyr_1599 0.66 -1.0
1,799,069 + Psyr_1599 0.68 -2.3
1,799,069 + Psyr_1599 0.68 -1.9
1,799,070 + Psyr_1599 0.68 -3.1
1,799,070 - Psyr_1599 0.68 -1.0
1,799,070 - Psyr_1599 0.68 +0.4
1,799,070 - Psyr_1599 0.68 -1.3
1,799,070 - Psyr_1599 0.68 -2.7
1,799,082 + Psyr_1599 0.68 -0.4
1,799,082 + Psyr_1599 0.68 -1.7
1,799,083 - Psyr_1599 0.69 -0.4
1,799,083 - Psyr_1599 0.69 -3.2
1,799,084 - Psyr_1599 0.69 +0.8
1,799,124 + Psyr_1599 0.70 -3.5
1,799,124 + Psyr_1599 0.70 -2.2
1,799,125 - Psyr_1599 0.70 -0.6
1,799,125 - Psyr_1599 0.70 -1.9
1,799,126 + Psyr_1599 0.71 +0.9
1,799,286 + Psyr_1599 0.78 -1.7
1,799,372 + Psyr_1599 0.82 -1.2
1,799,372 + Psyr_1599 0.82 -0.9
1,799,372 + Psyr_1599 0.82 -1.2
1,799,372 + Psyr_1599 0.82 -0.9
1,799,373 - Psyr_1599 0.82 -4.0
1,799,373 - Psyr_1599 0.82 -4.7
1,799,373 - Psyr_1599 0.82 -2.8
1,799,468 + Psyr_1599 0.87 -0.4
1,799,468 + Psyr_1599 0.87 -0.9
1,799,468 + Psyr_1599 0.87 -1.2
1,799,468 + Psyr_1599 0.87 +0.1
1,799,498 + Psyr_1599 0.88 -0.8
1,799,498 + Psyr_1599 0.88 -0.1
1,799,498 + Psyr_1599 0.88 -0.7
1,799,498 + Psyr_1599 0.88 -0.9
1,799,498 + Psyr_1599 0.88 -1.1
1,799,498 + Psyr_1599 0.88 -1.9
1,799,498 + Psyr_1599 0.88 +0.1
1,799,498 + Psyr_1599 0.88 -2.2
1,799,498 + Psyr_1599 0.88 +0.1
1,799,499 - Psyr_1599 0.88 -2.9
1,799,499 - Psyr_1599 0.88 -0.9
1,799,499 - Psyr_1599 0.88 -1.7
1,799,499 - Psyr_1599 0.88 +1.1
1,799,499 - Psyr_1599 0.88 -2.3
1,799,499 - Psyr_1599 0.88 +1.6
1,799,499 - Psyr_1599 0.88 +0.6
1,799,499 - Psyr_1599 0.88 -1.4
1,799,507 + Psyr_1599 0.89 -1.7
1,799,507 + Psyr_1599 0.89 -1.6
1,799,507 + Psyr_1599 0.89 -0.4
1,799,508 - Psyr_1599 0.89 -1.8
1,799,512 - Psyr_1599 0.89 -0.9
1,799,549 + +1.1
1,799,549 + -1.2
1,799,549 + -2.2
1,799,550 - -2.3
1,799,643 + -1.3
1,799,644 - +0.4
1,799,704 + -1.4
1,799,705 - -1.3
1,799,705 - -1.4
1,799,748 + +0.2
1,799,749 - -1.6
1,799,749 - -0.4
1,799,749 - -1.7
1,799,752 - -1.6
1,799,842 + -0.3
1,799,842 + +0.1
1,799,930 + +0.3
1,799,930 + -1.4
1,799,930 + -0.0
1,799,931 - +1.9
1,799,931 - -0.4
1,799,934 + +1.1
1,799,934 + -0.7
1,799,935 - -0.4
1,799,935 - +0.8
1,799,935 - -0.9
1,799,935 - +0.3
1,799,976 - Psyr_1600 0.13 -1.4
1,799,992 + Psyr_1600 0.14 -1.4
1,799,992 + Psyr_1600 0.14 +1.6
1,800,208 + Psyr_1600 0.37 -1.9
1,800,208 + Psyr_1600 0.37 -0.8
1,800,208 + Psyr_1600 0.37 +1.0
1,800,373 + Psyr_1600 0.54 -0.6
1,800,374 - Psyr_1600 0.54 -0.3
1,800,481 + Psyr_1600 0.65 +0.4
1,800,497 + Psyr_1600 0.67 +0.4
1,800,498 - Psyr_1600 0.67 -2.2
1,800,498 - Psyr_1600 0.67 -0.9
1,800,768 + +0.6
1,800,885 - -0.1
1,801,221 + Psyr_1601 0.59 -0.3
1,801,222 - Psyr_1601 0.59 -0.7
1,801,222 - Psyr_1601 0.59 +0.6
1,801,222 - Psyr_1601 0.59 -1.2
1,801,222 - Psyr_1601 0.59 -0.4
1,801,222 - Psyr_1601 0.59 -0.4
1,801,222 - Psyr_1601 0.59 +0.6
1,801,222 - Psyr_1601 0.59 -0.5
1,801,320 + Psyr_1601 0.74 +1.7
1,801,320 + Psyr_1601 0.74 -1.0
1,801,320 + Psyr_1601 0.74 +0.1
1,801,320 + Psyr_1601 0.74 -0.7
1,801,320 + Psyr_1601 0.74 +1.1
1,801,320 + Psyr_1601 0.74 +1.1
1,801,320 + Psyr_1601 0.74 +0.3
1,801,320 + Psyr_1601 0.74 +0.5
1,801,320 + Psyr_1601 0.74 +0.8
1,801,320 + Psyr_1601 0.74 +3.5
1,801,320 + Psyr_1601 0.74 -0.1
1,801,320 + Psyr_1601 0.74 -0.6
1,801,320 + Psyr_1601 0.74 -1.0
1,801,320 + Psyr_1601 0.74 -0.9
1,801,320 + Psyr_1601 0.74 -1.8
1,801,320 + Psyr_1601 0.74 -1.7
1,801,321 - Psyr_1601 0.74 -0.2
1,801,321 - Psyr_1601 0.74 +0.1
1,801,350 + Psyr_1601 0.79 -0.7
1,801,351 - Psyr_1601 0.79 -0.0
1,801,498 - +0.5
1,801,514 - +0.0
1,801,518 + +1.1
1,801,616 + -0.0
1,801,616 + +1.5
1,801,616 + +0.7
1,801,617 - +0.0
1,801,661 + -0.4
1,801,662 - -0.6
1,801,662 - -0.8
1,801,736 + Psyr_1602 0.16 +0.6
1,801,737 - Psyr_1602 0.16 +1.8

Or see this region's nucleotide sequence