Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1491

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
1,677,247	+				-0.4
1,677,247	+				-1.3
1,677,247	+				-0.9
1,677,248	-				+0.6
1,677,261	+				-0.1
1,677,262	-				+0.3
1,677,286	-				-0.9
1,677,286	-				+0.1
1,677,288	+				-0.5
1,677,288	+				-2.2
1,677,289	-				-0.5
1,677,289	-				+0.3
1,677,289	-				-2.8
1,677,289	-				-0.7
1,677,317	-		Psyr_1489	0.11	-0.1
1,677,317	-		Psyr_1489	0.11	+1.7
1,677,317	-		Psyr_1489	0.11	+0.1
1,677,344	-		Psyr_1489	0.20	-0.9
1,677,369	+		Psyr_1489	0.29	-2.8
1,677,450	+		Psyr_1489	0.58	-1.2
1,677,450	+		Psyr_1489	0.58	-1.4
1,677,451	-		Psyr_1489	0.59	-0.9
1,677,480	+		Psyr_1489	0.69	-0.7
1,677,481	-		Psyr_1489	0.70	-0.7
1,677,481	-		Psyr_1489	0.70	+0.6
1,677,481	-		Psyr_1489	0.70	-0.5
1,677,481	-		Psyr_1489	0.70	+0.2
1,677,571	+				-1.2
1,677,571	+				-1.3
1,677,572	-				+1.1
1,677,572	-				-0.5
1,677,572	-				+0.1
1,677,619	+				+0.7
1,677,619	+				-0.8
1,677,619	+				+0.3
1,677,620	-				-0.5
1,677,620	-				+0.1
1,677,620	-				+0.1
1,677,620	-				-0.4
1,677,620	-				+0.1
1,677,644	-				-0.4
1,677,672	+				-1.2
1,678,074	+				-1.2
1,678,075	-				-0.4
1,678,075	-				+0.4
1,678,075	-				-0.9
1,678,075	-				-1.0
1,678,116	+				+0.3
1,678,116	+				-0.5
1,678,116	+				+0.7
1,678,116	+				-0.0
1,678,116	+				-1.4
1,678,116	+				+0.3
1,678,116	+				-0.1
1,678,117	-				+0.1
1,678,117	-				+0.8
1,678,117	-				+1.7
1,678,117	-				+0.7
1,678,117	-				+1.1
1,678,117	-				-0.7
1,678,119	-				+0.6
1,678,119	-				-1.0
1,678,143	+				-1.2
1,678,143	+				-0.7
1,678,143	+				-0.6
1,678,143	+				+0.6
1,678,183	+				-1.2
1,678,183	+				-1.2
1,678,183	+				+1.7
1,678,183	+				+1.7
1,678,183	+				-1.3
1,678,184	-				+0.3
1,678,184	-				-0.1
1,678,184	-				-1.7
1,678,184	-				+1.1
1,678,184	-				-1.6
1,678,184	-				-0.1
1,678,191	+				-0.2
1,678,192	-				-1.3
1,678,192	-				+0.2
1,678,196	+				+0.3
1,678,196	+				+0.3
1,678,197	-				-2.1
1,678,197	-				+0.1
1,678,231	-				+1.7
1,678,404	+		Psyr_1491	0.13	-2.0
1,678,404	+		Psyr_1491	0.13	-1.9
1,678,404	+		Psyr_1491	0.13	+0.4
1,678,404	+		Psyr_1491	0.13	+0.2
1,678,404	+		Psyr_1491	0.13	-0.8
1,678,404	+		Psyr_1491	0.13	-2.4
1,678,405	-		Psyr_1491	0.13	+0.5
1,678,405	-		Psyr_1491	0.13	+0.3
1,678,405	-		Psyr_1491	0.13	+1.1
1,678,405	-		Psyr_1491	0.13	+0.1
1,678,405	-		Psyr_1491	0.13	-0.9
1,678,405	-		Psyr_1491	0.13	+0.6
1,678,405	-		Psyr_1491	0.13	+1.8
1,678,405	-		Psyr_1491	0.13	-0.4
1,678,405	-		Psyr_1491	0.13	-1.8
1,678,405	-		Psyr_1491	0.13	-0.9
1,678,405	-		Psyr_1491	0.13	+0.1
1,678,405	-		Psyr_1491	0.13	+0.1
1,678,405	-		Psyr_1491	0.13	-0.1
1,678,788	+		Psyr_1491	0.37	-0.2
1,678,788	+		Psyr_1491	0.37	-0.5
1,678,789	-		Psyr_1491	0.37	+0.1
1,678,789	-		Psyr_1491	0.37	-0.7
1,678,789	-		Psyr_1491	0.37	+1.0
1,678,789	-		Psyr_1491	0.37	-0.5
1,678,802	-		Psyr_1491	0.37	-0.9
1,678,824	+		Psyr_1491	0.39	-0.7
1,678,826	+		Psyr_1491	0.39	+0.3
1,678,827	-		Psyr_1491	0.39	+1.1
1,678,827	-		Psyr_1491	0.39	-1.2
1,678,876	+		Psyr_1491	0.42	-0.3
1,678,876	+		Psyr_1491	0.42	-0.5
1,678,877	-		Psyr_1491	0.42	+1.5
1,678,877	-		Psyr_1491	0.42	-0.1
1,678,927	+		Psyr_1491	0.45	-1.7
1,678,927	+		Psyr_1491	0.45	-0.9
1,678,927	+		Psyr_1491	0.45	-0.2
1,678,927	+		Psyr_1491	0.45	-1.5
1,678,928	-		Psyr_1491	0.45	+1.1
1,678,928	-		Psyr_1491	0.45	+0.5
1,678,928	-		Psyr_1491	0.45	+2.1
1,678,928	-		Psyr_1491	0.45	-1.4
1,678,928	-		Psyr_1491	0.45	-1.3
1,678,928	-		Psyr_1491	0.45	-0.6
1,678,928	-		Psyr_1491	0.45	+0.8
1,679,105	-		Psyr_1491	0.56	-0.8
1,679,178	+		Psyr_1491	0.61	+1.5
1,679,178	+		Psyr_1491	0.61	-2.6
1,679,178	+		Psyr_1491	0.61	-1.5
1,679,179	-		Psyr_1491	0.61	-1.2
1,679,232	+		Psyr_1491	0.64	+0.3
1,679,252	+		Psyr_1491	0.65	-1.7
1,679,252	+		Psyr_1491	0.65	+0.4
1,679,252	+		Psyr_1491	0.65	-1.4
1,679,252	+		Psyr_1491	0.65	+0.3
1,679,252	+		Psyr_1491	0.65	-0.8
1,679,252	+		Psyr_1491	0.65	-1.5
1,679,252	+		Psyr_1491	0.65	+0.1
1,679,252	+		Psyr_1491	0.65	+0.2
1,679,253	-		Psyr_1491	0.65	+0.1
1,679,253	-		Psyr_1491	0.65	-1.8
1,679,253	-		Psyr_1491	0.65	+1.1
1,679,253	-		Psyr_1491	0.65	-0.6
1,679,253	-		Psyr_1491	0.65	-0.5
1,679,253	-		Psyr_1491	0.65	+0.8
1,679,253	-		Psyr_1491	0.65	-1.2
1,679,267	+		Psyr_1491	0.66	-0.9
1,679,311	-		Psyr_1491	0.69	+1.2
1,679,365	+		Psyr_1491	0.72	-0.7
1,679,365	+		Psyr_1491	0.72	-1.5
1,679,365	+		Psyr_1491	0.72	-0.5
1,679,365	+		Psyr_1491	0.72	-0.9
1,679,365	+		Psyr_1491	0.72	-0.3
1,679,366	-		Psyr_1491	0.72	-0.6
1,679,366	-		Psyr_1491	0.72	-0.4
1,679,366	-		Psyr_1491	0.72	+1.1
1,679,366	-		Psyr_1491	0.72	+0.5
1,679,447	+		Psyr_1491	0.77	-0.7
1,679,457	-		Psyr_1491	0.78	-0.8
1,679,516	+		Psyr_1491	0.82	-0.4
1,679,516	+		Psyr_1491	0.82	-0.4
1,679,516	+		Psyr_1491	0.82	+0.4
1,679,516	+		Psyr_1491	0.82	+0.5
1,679,516	+		Psyr_1491	0.82	+0.8
1,679,516	+		Psyr_1491	0.82	+0.3
1,679,516	+		Psyr_1491	0.82	-2.0
1,679,516	+		Psyr_1491	0.82	+0.1
1,679,516	+		Psyr_1491	0.82	-1.0
1,679,516	+		Psyr_1491	0.82	+0.3
1,679,516	+		Psyr_1491	0.82	-0.5
1,679,516	+		Psyr_1491	0.82	-0.7
1,679,517	-		Psyr_1491	0.82	-1.3
1,679,517	-		Psyr_1491	0.82	-0.7
1,679,517	-		Psyr_1491	0.82	-1.2
1,679,517	-		Psyr_1491	0.82	+0.3
1,679,517	-		Psyr_1491	0.82	-0.5
1,679,517	-		Psyr_1491	0.82	-0.2
1,679,517	-		Psyr_1491	0.82	-0.4
1,679,517	-		Psyr_1491	0.82	+0.2
1,679,517	-		Psyr_1491	0.82	-0.7
1,679,517	-		Psyr_1491	0.82	+0.1
1,679,517	-		Psyr_1491	0.82	-1.1
1,679,517	-		Psyr_1491	0.82	-1.0
1,679,517	-		Psyr_1491	0.82	-1.2
1,679,520	+		Psyr_1491	0.82	-0.2
1,679,520	+		Psyr_1491	0.82	-0.4
1,679,520	+		Psyr_1491	0.82	-1.1
1,679,520	+		Psyr_1491	0.82	+0.4
1,679,520	+		Psyr_1491	0.82	-1.4
1,679,520	+		Psyr_1491	0.82	-1.5
1,679,520	+		Psyr_1491	0.82	-0.1
1,679,521	-		Psyr_1491	0.82	-1.6
1,679,521	-		Psyr_1491	0.82	+0.1
1,679,522	+		Psyr_1491	0.82	-1.5
1,679,522	+		Psyr_1491	0.82	+1.1
1,679,522	+		Psyr_1491	0.82	-1.9
1,679,522	+		Psyr_1491	0.82	-1.5
1,679,522	+		Psyr_1491	0.82	+0.2
1,679,522	+		Psyr_1491	0.82	-0.8
1,679,522	+		Psyr_1491	0.82	-0.6
1,679,523	-		Psyr_1491	0.82	+1.6
1,679,523	-		Psyr_1491	0.82	-0.7
1,679,523	-		Psyr_1491	0.82	-1.2
1,679,523	-		Psyr_1491	0.82	-1.0
1,679,661	+				-2.1
1,679,662	-				+0.5
1,679,722	+				-0.4
1,679,723	-				-0.6
1,679,797	+				-0.9
1,679,798	-				-1.5
1,679,798	-				-0.4
1,679,798	-				-0.1
1,679,798	-				-1.5
1,679,798	-				+0.4
1,679,799	+				-0.3
1,679,799	+				+0.2
1,679,800	-				-1.5
1,679,800	-				+0.3
1,679,800	-				+2.1
1,679,814	+				-1.4
1,679,814	+				+0.3
1,679,859	-				-0.8
1,679,882	+				-1.3
1,679,883	-				-2.6
1,679,933	-				-1.4
1,679,958	+				-1.9
1,679,958	+				-0.5
1,679,958	+				+0.1
1,679,959	-				-1.7
1,679,959	-				-0.9
1,679,959	-				-0.1
1,679,959	-				+0.7
1,679,959	-				+0.1
1,679,959	-				+1.1
1,679,966	+				+0.3
1,679,966	+				-0.8
1,679,966	+				-0.8
1,679,967	-				-0.5
1,679,967	-				-0.9
1,679,967	-				-1.7
1,679,973	+				-0.2
1,679,974	-				+0.2
1,679,974	-				-2.4
1,679,974	-				-1.5
1,680,442	+		Psyr_1492	0.37	+1.3
1,680,458	-		Psyr_1492	0.38	-1.6
1,680,458	-		Psyr_1492	0.38	-1.1
1,680,458	-				-1.7
1,680,458	-		Psyr_1492	0.38	+0.3
1,680,504	-		Psyr_1492	0.43	-1.3
1,680,539	+		Psyr_1492	0.47	+0.4
1,680,539	+		Psyr_1492	0.47	+1.3
1,680,539	+		Psyr_1492	0.47	-0.5
1,680,540	-		Psyr_1492	0.47	+2.4
1,680,540	-		Psyr_1492	0.47	-0.2
1,680,540	-		Psyr_1492	0.47	+1.5
1,680,540	-		Psyr_1492	0.47	+1.2
1,680,579	+		Psyr_1492	0.51	-2.4
1,680,579	+		Psyr_1492	0.51	+1.5
1,680,655	+		Psyr_1492	0.59	+0.3
1,680,655	+		Psyr_1492	0.59	+0.3
1,680,655	+		Psyr_1492	0.59	+0.5
1,680,655	+		Psyr_1492	0.59	-0.9
1,680,656	-		Psyr_1492	0.59	+0.3
1,680,682	+		Psyr_1492	0.61	+2.0
1,680,682	+		Psyr_1492	0.61	-0.9
1,680,682	+		Psyr_1492	0.61	+1.2
1,680,683	-		Psyr_1492	0.62	-1.2
1,680,683	-		Psyr_1492	0.62	-0.9
1,680,687	+		Psyr_1492	0.62	+1.0
1,680,688	-		Psyr_1492	0.62	+0.1
1,680,688	-		Psyr_1492	0.62	-0.7
1,680,688	-		Psyr_1492	0.62	-1.0
1,680,719	+		Psyr_1492	0.65	+1.0
1,680,719	+		Psyr_1492	0.65	-0.7
1,680,719	+		Psyr_1492	0.65	+0.4
1,680,719	+		Psyr_1492	0.65	+0.4
1,680,719	+		Psyr_1492	0.65	+1.1
1,680,720	-		Psyr_1492	0.65	-0.2
1,680,720	-		Psyr_1492	0.65	+1.1