Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1397

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1396 and Psyr_RNA21 are separated by 349 nucleotidesPsyr_RNA21 and Psyr_RNA22 are separated by 205 nucleotidesPsyr_RNA22 and Psyr_1397 are separated by 261 nucleotidesPsyr_1397 and Psyr_1398 are separated by 45 nucleotides Psyr_1396: Psyr_1396 - Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472, at 1,578,990 to 1,581,632 _1396 Psyr_RNA21: Psyr_RNA21 - tRNA-Met, at 1,581,982 to 1,582,058 _RNA21 Psyr_RNA22: Psyr_RNA22 - tRNA-Met, at 1,582,264 to 1,582,340 _RNA22 Psyr_1397: Psyr_1397 - DNA-directed DNA polymerase, at 1,582,602 to 1,583,666 _1397 Psyr_1398: Psyr_1398 - lipoprotein, putative, at 1,583,712 to 1,584,668 _1398 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1581.669 kb on + strandat 1581.669 kb on + strandat 1581.669 kb on + strandat 1581.669 kb on + strandat 1581.669 kb on + strandat 1581.670 kb on - strandat 1581.670 kb on - strandat 1581.670 kb on - strandat 1581.682 kb on + strandat 1581.682 kb on + strandat 1581.683 kb on - strandat 1581.693 kb on - strandat 1581.796 kb on + strandat 1581.797 kb on - strandat 1581.799 kb on + strandat 1581.800 kb on - strandat 1581.800 kb on - strandat 1581.833 kb on + strandat 1581.833 kb on + strandat 1581.834 kb on - strandat 1581.846 kb on + strandat 1581.846 kb on + strandat 1581.847 kb on - strandat 1581.847 kb on - strandat 1581.847 kb on - strandat 1581.866 kb on - strandat 1582.129 kb on - strandat 1582.129 kb on - strandat 1582.156 kb on + strandat 1582.156 kb on + strandat 1582.156 kb on + strandat 1582.156 kb on + strandat 1582.156 kb on + strandat 1582.157 kb on - strandat 1582.157 kb on - strandat 1582.157 kb on - strandat 1582.157 kb on - strandat 1582.159 kb on - strandat 1582.358 kb on + strandat 1582.420 kb on - strandat 1582.509 kb on + strandat 1582.544 kb on + strandat 1582.544 kb on + strandat 1582.544 kb on + strandat 1582.545 kb on - strandat 1582.545 kb on - strandat 1582.545 kb on - strandat 1582.545 kb on - strandat 1582.545 kb on - strandat 1582.545 kb on - strandat 1582.565 kb on + strandat 1582.565 kb on + strandat 1582.565 kb on + strandat 1582.566 kb on - strandat 1582.566 kb on - strandat 1582.644 kb on + strandat 1582.644 kb on + strandat 1582.644 kb on + strandat 1582.645 kb on - strandat 1582.645 kb on - strandat 1582.645 kb on - strandat 1582.739 kb on + strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.743 kb on + strand, within Psyr_1397at 1582.743 kb on + strand, within Psyr_1397at 1582.743 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.844 kb on + strand, within Psyr_1397at 1582.844 kb on + strand, within Psyr_1397at 1582.845 kb on - strand, within Psyr_1397at 1582.895 kb on + strand, within Psyr_1397at 1582.895 kb on + strand, within Psyr_1397at 1582.896 kb on - strand, within Psyr_1397at 1582.897 kb on + strand, within Psyr_1397at 1582.897 kb on + strand, within Psyr_1397at 1582.898 kb on - strand, within Psyr_1397at 1582.898 kb on - strand, within Psyr_1397at 1583.100 kb on - strand, within Psyr_1397at 1583.158 kb on + strand, within Psyr_1397at 1583.348 kb on + strand, within Psyr_1397at 1583.353 kb on - strand, within Psyr_1397at 1583.353 kb on - strand, within Psyr_1397at 1583.541 kb on + strand, within Psyr_1397at 1583.542 kb on - strand, within Psyr_1397at 1583.542 kb on - strand, within Psyr_1397at 1583.542 kb on - strand, within Psyr_1397at 1583.602 kb on + strandat 1583.603 kb on - strandat 1583.603 kb on - strandat 1583.917 kb on + strand, within Psyr_1398at 1583.917 kb on + strand, within Psyr_1398at 1583.918 kb on - strand, within Psyr_1398at 1583.918 kb on - strand, within Psyr_1398at 1583.918 kb on - strand, within Psyr_1398at 1584.017 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.385 kb on + strand, within Psyr_1398at 1584.386 kb on - strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.416 kb on - strand, within Psyr_1398at 1584.424 kb on + strand, within Psyr_1398at 1584.648 kb on + strandat 1584.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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1,581,669 + -1.0
1,581,669 + -1.8
1,581,669 + -0.6
1,581,669 + -0.2
1,581,669 + +1.0
1,581,670 - -0.2
1,581,670 - +0.6
1,581,670 - +0.0
1,581,682 + +1.9
1,581,682 + +0.5
1,581,683 - -1.5
1,581,693 - +0.7
1,581,796 + -0.1
1,581,797 - -0.4
1,581,799 + -2.6
1,581,800 - -0.1
1,581,800 - -0.8
1,581,833 + -2.2
1,581,833 + -1.3
1,581,834 - +2.0
1,581,846 + -0.8
1,581,846 + -1.3
1,581,847 - -0.1
1,581,847 - -0.9
1,581,847 - +2.0
1,581,866 - -0.2
1,582,129 - -1.1
1,582,129 - -0.2
1,582,156 + -2.6
1,582,156 + -1.8
1,582,156 + -1.3
1,582,156 + -1.3
1,582,156 + -1.0
1,582,157 - -0.3
1,582,157 - -0.2
1,582,157 - +1.2
1,582,157 - +0.3
1,582,159 - +1.2
1,582,358 + -0.2
1,582,420 - -0.1
1,582,509 + -0.1
1,582,544 + +0.2
1,582,544 + +0.0
1,582,544 + -0.3
1,582,545 - -1.0
1,582,545 - +0.2
1,582,545 - +0.3
1,582,545 - +0.0
1,582,545 - +1.9
1,582,545 - +0.4
1,582,565 + -1.7
1,582,565 + -0.9
1,582,565 + +0.2
1,582,566 - -0.5
1,582,566 - +2.0
1,582,644 + +2.0
1,582,644 + +0.9
1,582,644 + -1.3
1,582,645 - +0.7
1,582,645 - -0.1
1,582,645 - -0.1
1,582,739 + Psyr_1397 0.13 +0.0
1,582,740 - Psyr_1397 0.13 +1.0
1,582,740 - Psyr_1397 0.13 -0.1
1,582,740 - Psyr_1397 0.13 +0.7
1,582,740 - Psyr_1397 0.13 -0.6
1,582,740 - Psyr_1397 0.13 +0.9
1,582,740 - Psyr_1397 0.13 +0.7
1,582,743 + Psyr_1397 0.13 -0.1
1,582,743 + Psyr_1397 0.13 +1.7
1,582,743 + Psyr_1397 0.13 -0.1
1,582,842 + Psyr_1397 0.23 +1.0
1,582,842 + Psyr_1397 0.23 +0.4
1,582,842 + Psyr_1397 0.23 +2.0
1,582,842 + Psyr_1397 0.23 +1.2
1,582,843 - Psyr_1397 0.23 +0.7
1,582,843 - Psyr_1397 0.23 +0.3
1,582,843 - Psyr_1397 0.23 +1.6
1,582,843 - Psyr_1397 0.23 +1.6
1,582,843 - Psyr_1397 0.23 -1.2
1,582,843 - Psyr_1397 0.23 +0.9
1,582,843 - Psyr_1397 0.23 +1.8
1,582,844 + Psyr_1397 0.23 -0.3
1,582,844 + Psyr_1397 0.23 +1.3
1,582,845 - Psyr_1397 0.23 +1.3
1,582,895 + Psyr_1397 0.28 -1.2
1,582,895 + Psyr_1397 0.28 -0.3
1,582,896 - Psyr_1397 0.28 +1.3
1,582,897 + Psyr_1397 0.28 +1.5
1,582,897 + Psyr_1397 0.28 -0.4
1,582,898 - Psyr_1397 0.28 +0.0
1,582,898 - Psyr_1397 0.28 +0.1
1,583,100 - Psyr_1397 0.47 +0.5
1,583,158 + Psyr_1397 0.52 +0.5
1,583,348 + Psyr_1397 0.70 +0.7
1,583,353 - Psyr_1397 0.71 -0.1
1,583,353 - Psyr_1397 0.71 +0.1
1,583,541 + Psyr_1397 0.88 -0.6
1,583,542 - Psyr_1397 0.88 +0.4
1,583,542 - Psyr_1397 0.88 +1.0
1,583,542 - Psyr_1397 0.88 +0.0
1,583,602 + +1.7
1,583,603 - +1.6
1,583,603 - -1.1
1,583,917 + Psyr_1398 0.21 -1.1
1,583,917 + Psyr_1398 0.21 -0.6
1,583,918 - Psyr_1398 0.22 +0.0
1,583,918 - Psyr_1398 0.22 -2.0
1,583,918 - Psyr_1398 0.22 -0.8
1,584,017 + Psyr_1398 0.32 +0.0
1,584,019 + Psyr_1398 0.32 -2.0
1,584,019 + Psyr_1398 0.32 -0.8
1,584,019 + Psyr_1398 0.32 +0.4
1,584,019 + Psyr_1398 0.32 -0.8
1,584,019 + Psyr_1398 0.32 -0.8
1,584,019 + Psyr_1398 0.32 -0.1
1,584,019 + Psyr_1398 0.32 -0.7
1,584,019 + Psyr_1398 0.32 -2.6
1,584,019 + Psyr_1398 0.32 +0.3
1,584,019 + Psyr_1398 0.32 -2.9
1,584,019 + Psyr_1398 0.32 -1.2
1,584,019 + Psyr_1398 0.32 -0.3
1,584,019 + Psyr_1398 0.32 -1.0
1,584,019 + Psyr_1398 0.32 -1.2
1,584,019 + Psyr_1398 0.32 -1.5
1,584,019 + Psyr_1398 0.32 +0.3
1,584,019 + Psyr_1398 0.32 -0.1
1,584,019 + Psyr_1398 0.32 +0.0
1,584,019 + Psyr_1398 0.32 -0.6
1,584,019 + Psyr_1398 0.32 -0.4
1,584,019 + Psyr_1398 0.32 +0.0
1,584,019 + Psyr_1398 0.32 -0.7
1,584,019 + Psyr_1398 0.32 -3.0
1,584,020 - Psyr_1398 0.32 -1.6
1,584,020 - Psyr_1398 0.32 -2.2
1,584,020 - Psyr_1398 0.32 -0.6
1,584,020 - Psyr_1398 0.32 -0.6
1,584,020 - Psyr_1398 0.32 +0.0
1,584,020 - Psyr_1398 0.32 -2.6
1,584,020 - Psyr_1398 0.32 +0.5
1,584,020 - Psyr_1398 0.32 +0.6
1,584,020 - Psyr_1398 0.32 -0.6
1,584,020 - Psyr_1398 0.32 -1.2
1,584,020 - Psyr_1398 0.32 -0.4
1,584,020 - Psyr_1398 0.32 +0.0
1,584,020 - Psyr_1398 0.32 -0.8
1,584,020 - Psyr_1398 0.32 -1.6
1,584,020 - Psyr_1398 0.32 -2.2
1,584,020 - Psyr_1398 0.32 +0.4
1,584,020 - Psyr_1398 0.32 +0.3
1,584,020 - Psyr_1398 0.32 +0.2
1,584,020 - Psyr_1398 0.32 -1.3
1,584,020 - Psyr_1398 0.32 -0.3
1,584,020 - Psyr_1398 0.32 +2.6
1,584,020 - Psyr_1398 0.32 -0.1
1,584,020 - Psyr_1398 0.32 -0.2
1,584,385 + Psyr_1398 0.70 -1.3
1,584,386 - Psyr_1398 0.70 -1.1
1,584,413 + Psyr_1398 0.73 +0.3
1,584,413 + Psyr_1398 0.73 -1.0
1,584,413 + Psyr_1398 0.73 -0.3
1,584,413 + Psyr_1398 0.73 -0.1
1,584,414 - Psyr_1398 0.73 -1.8
1,584,414 - Psyr_1398 0.73 -1.7
1,584,414 - Psyr_1398 0.73 -0.6
1,584,414 - Psyr_1398 0.73 +2.6
1,584,416 - Psyr_1398 0.74 -1.6
1,584,424 + Psyr_1398 0.74 -0.6
1,584,648 + -1.4
1,584,649 - -0.2

Or see this region's nucleotide sequence