Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1264

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
1,425,688	-				-3.6
1,425,783	+				+0.1
1,425,783	+				-0.2
1,425,783	+				+0.1
1,425,784	-				-0.8
1,425,784	-				-1.8
1,425,784	-				-0.0
1,425,800	+				+0.3
1,425,800	+				-0.4
1,425,824	+				-1.2
1,425,827	-				-1.9
1,425,885	+				-1.1
1,425,886	-				-1.1
1,425,886	-				-2.8
1,425,886	-				+0.9
1,425,886	-				-2.8
1,425,965	+				-1.3
1,425,973	-				-1.0
1,425,973	-				-1.1
1,425,991	-				-1.6
1,425,994	+				-0.1
1,425,994	+				-1.1
1,425,994	+				-1.2
1,425,994	+				+0.5
1,425,995	-				-1.7
1,425,995	-				-2.6
1,425,995	-				+2.1
1,425,995	-				+0.1
1,426,094	+				-0.7
1,426,094	+				-1.1
1,426,094	+				-0.4
1,426,094	+				-1.0
1,426,095	-				-0.7
1,426,095	-				-1.1
1,426,100	-				-0.7
1,426,103	+				-0.7
1,426,103	+				+0.3
1,426,104	-				+0.2
1,426,105	+				-0.5
1,426,106	-				-1.2
1,426,106	-				+0.7
1,426,123	+				+0.9
1,426,162	-				+0.6
1,426,162	-				-0.4
1,426,162	-				-1.8
1,426,162	-				-2.4
1,426,162	-				-1.3
1,426,162	-				-0.7
1,426,162	-				+0.9
1,426,162	-				-2.6
1,426,203	+				-1.8
1,426,257	-				-1.2
1,426,260	-				-2.7
1,426,283	-				-1.4
1,426,343	+				-2.3
1,426,343	+				-0.6
1,426,348	+				-0.4
1,426,348	+				-1.7
1,426,349	-				-0.1
1,426,349	-				-2.6
1,426,352	+				-1.4
1,426,353	-				-3.8
1,426,366	+				-0.7
1,426,392	-				-1.9
1,426,727	+		Psyr_1264	0.14	-1.2
1,426,727	+		Psyr_1264	0.14	+0.3
1,426,727	+		Psyr_1264	0.14	+0.8
1,426,727	+		Psyr_1264	0.14	-0.9
1,426,728	-		Psyr_1264	0.14	-1.1
1,426,728	-		Psyr_1264	0.14	-0.5
1,426,728	-		Psyr_1264	0.14	-1.7
1,426,940	+		Psyr_1264	0.58	-0.1
1,426,985	+		Psyr_1264	0.67	+0.2
1,427,013	+		Psyr_1264	0.73	-1.3
1,427,186	-				-1.8
1,427,221	+				-1.1
1,427,298	+				-1.8
1,427,299	-				-1.0
1,427,329	+				+0.4
1,427,329	+				-1.7
1,427,330	-				-1.2
1,427,330	-				-0.1
1,427,330	-				+2.5
1,427,333	+				-2.4
1,427,333	+				-1.9
1,427,333	+				+1.3
1,427,333	+				+0.3
1,427,333	+				-0.9
1,427,334	-				-0.9
1,427,334	-				-2.9
1,427,439	-				-3.2
1,427,439	-				-0.6
1,427,444	+				-0.1
1,427,444	+				-0.2
1,427,444	+				+1.4
1,427,444	+				+1.5
1,427,445	-				-0.6
1,427,445	-				-1.3
1,427,445	-				-1.9
1,427,445	-				+0.8
1,427,447	+				-1.7
1,427,447	+				+1.3
1,427,447	+				+0.2
1,427,448	-				-1.0
1,427,448	-				+0.9
1,427,448	-				-0.7
1,427,448	-				+0.6
1,427,479	+				-0.9
1,427,479	+				+1.2
1,427,479	+				-0.5
1,427,480	-				-0.8
1,427,480	-				+0.3
1,427,480	-				-2.1
1,427,480	-				-0.1
1,427,480	-				+1.5
1,427,480	-				-0.5
1,427,520	+				-0.3
1,427,520	+				-0.4
1,427,520	+				-0.0
1,427,520	+				-1.2
1,427,520	+				+0.4
1,427,544	+				-2.1
1,427,594	+				+0.4
1,427,594	+				-1.7
1,427,594	+				-1.9
1,427,595	-				-1.4
1,427,595	-				+0.0
1,427,595	-				+0.3
1,427,595	-				+0.0
1,427,595	-				+0.5
1,427,595	-				-0.8
1,427,595	-				-1.3
1,427,595	-				+0.7
1,427,651	+				-0.7
1,427,652	-				+0.9
1,427,652	-				-1.9
1,427,666	+				+0.3
1,427,666	+				+1.3
1,427,666	+				-1.2
1,427,667	-				-1.8
1,427,709	+				+0.9
1,427,709	+				+0.1
1,427,709	+				-0.7
1,427,710	-				-0.4
1,427,718	+				-1.4
1,427,719	-				-1.7
1,427,731	+				+0.4
1,427,731	+				+0.2
1,427,732	-				-1.0
1,427,732	-				-1.3
1,427,811	+		Psyr_1265	0.11	+1.9
1,427,811	+		Psyr_1265	0.11	-0.5
1,427,811	+		Psyr_1265	0.11	+1.1
1,427,811	+		Psyr_1265	0.11	-0.4
1,427,811	+		Psyr_1265	0.11	+0.9
1,427,812	-		Psyr_1265	0.11	+0.5
1,427,812	-		Psyr_1265	0.11	+0.0
1,427,812	-		Psyr_1265	0.11	-2.8
1,427,812	-		Psyr_1265	0.11	+1.2
1,427,812	-		Psyr_1265	0.11	-0.3
1,427,818	+		Psyr_1265	0.11	-0.1
1,427,818	+		Psyr_1265	0.11	-0.7
1,427,818	+		Psyr_1265	0.11	+0.5
1,427,819	-		Psyr_1265	0.11	+1.2
1,427,819	-		Psyr_1265	0.11	+0.1
1,427,819	-		Psyr_1265	0.11	-0.9
1,427,819	-		Psyr_1265	0.11	-2.1
1,427,910	+		Psyr_1265	0.16	-0.7
1,427,910	+		Psyr_1265	0.16	-1.2
1,427,910	+		Psyr_1265	0.16	+0.3
1,427,910	+		Psyr_1265	0.16	-1.5
1,427,910	+		Psyr_1265	0.16	+1.9
1,427,910	+		Psyr_1265	0.16	-0.6
1,427,911	-		Psyr_1265	0.16	-0.6
1,427,911	-		Psyr_1265	0.16	-0.5
1,427,911	-		Psyr_1265	0.16	-1.7
1,427,911	-		Psyr_1265	0.16	-1.8
1,427,911	-		Psyr_1265	0.16	-1.8
1,427,911	-		Psyr_1265	0.16	+0.6
1,427,911	-		Psyr_1265	0.16	-0.5
1,427,911	-		Psyr_1265	0.16	-0.7
1,427,911	-		Psyr_1265	0.16	-0.9
1,427,911	-		Psyr_1265	0.16	-1.7
1,427,911	-		Psyr_1265	0.16	+1.5
1,427,911	-		Psyr_1265	0.16	-0.6
1,427,939	+		Psyr_1265	0.17	-1.1