Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1065 and Psyr_1066 are separated by 294 nucleotides Psyr_1066 and Psyr_1067 are separated by 341 nucleotides Psyr_1067 and Psyr_1068 overlap by 4 nucleotides
Psyr_1065: Psyr_1065 - Polysaccharide deacetylase, at 1,207,838 to 1,209,016
_1065
Psyr_1066: Psyr_1066 - PhoH-like protein, at 1,209,311 to 1,210,705
_1066
Psyr_1067: Psyr_1067 - GTP cyclohydrolase subunit MoaC, at 1,211,047 to 1,211,532
_1067
Psyr_1068: Psyr_1068 - molybdopterin synthase subunit MoaD, at 1,211,529 to 1,211,774
_1068
Position (kb) 1209
1210
1211 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1208.342 kb on + strand, within Psyr_1065 at 1208.342 kb on + strand, within Psyr_1065 at 1208.343 kb on - strand, within Psyr_1065 at 1208.550 kb on - strand, within Psyr_1065 at 1208.694 kb on - strand, within Psyr_1065 at 1208.857 kb on - strand, within Psyr_1065 at 1208.950 kb on + strand at 1208.950 kb on + strand at 1209.050 kb on - strand at 1209.063 kb on - strand at 1209.063 kb on - strand at 1209.079 kb on - strand at 1209.097 kb on + strand at 1209.147 kb on + strand at 1209.148 kb on - strand at 1209.150 kb on + strand at 1209.150 kb on + strand at 1209.150 kb on + strand at 1209.151 kb on - strand at 1209.151 kb on - strand at 1209.151 kb on - strand at 1209.157 kb on - strand at 1209.265 kb on - strand at 1209.294 kb on + strand at 1209.294 kb on + strand at 1209.295 kb on - strand at 1209.357 kb on - strand at 1209.357 kb on - strand at 1209.357 kb on - strand at 1209.375 kb on + strand at 1209.375 kb on + strand at 1209.376 kb on - strand at 1209.376 kb on - strand at 1209.376 kb on - strand at 1209.376 kb on - strand at 1209.580 kb on + strand, within Psyr_1066 at 1209.581 kb on - strand, within Psyr_1066 at 1209.599 kb on + strand, within Psyr_1066 at 1209.788 kb on + strand, within Psyr_1066 at 1209.949 kb on + strand, within Psyr_1066 at 1209.950 kb on - strand, within Psyr_1066 at 1209.950 kb on - strand, within Psyr_1066 at 1209.950 kb on - strand, within Psyr_1066 at 1209.984 kb on + strand, within Psyr_1066 at 1210.088 kb on + strand, within Psyr_1066 at 1210.088 kb on + strand, within Psyr_1066 at 1210.088 kb on + strand, within Psyr_1066 at 1210.088 kb on + strand, within Psyr_1066 at 1210.088 kb on + strand, within Psyr_1066 at 1210.089 kb on - strand, within Psyr_1066 at 1210.089 kb on - strand, within Psyr_1066 at 1210.089 kb on - strand, within Psyr_1066 at 1210.089 kb on - strand, within Psyr_1066 at 1210.382 kb on + strand, within Psyr_1066 at 1210.382 kb on + strand, within Psyr_1066 at 1210.382 kb on + strand, within Psyr_1066 at 1210.382 kb on + strand, within Psyr_1066 at 1210.382 kb on + strand, within Psyr_1066 at 1210.383 kb on - strand, within Psyr_1066 at 1210.383 kb on - strand, within Psyr_1066 at 1210.383 kb on - strand, within Psyr_1066 at 1210.383 kb on - strand, within Psyr_1066 at 1210.383 kb on - strand, within Psyr_1066 at 1210.383 kb on - strand, within Psyr_1066 at 1210.424 kb on + strand, within Psyr_1066 at 1210.424 kb on + strand, within Psyr_1066 at 1210.424 kb on + strand, within Psyr_1066 at 1210.424 kb on + strand, within Psyr_1066 at 1210.424 kb on + strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.425 kb on - strand, within Psyr_1066 at 1210.605 kb on - strand at 1210.703 kb on + strand at 1210.704 kb on - strand at 1210.704 kb on - strand at 1210.720 kb on + strand at 1210.720 kb on + strand at 1210.720 kb on + strand at 1210.720 kb on + strand at 1210.721 kb on - strand at 1210.721 kb on - strand at 1210.721 kb on - strand at 1210.721 kb on - strand at 1210.721 kb on - strand at 1210.746 kb on + strand at 1210.746 kb on + strand at 1210.746 kb on + strand at 1210.765 kb on - strand at 1210.765 kb on - strand at 1210.765 kb on - strand at 1210.798 kb on - strand at 1210.798 kb on - strand at 1210.835 kb on - strand at 1210.859 kb on + strand at 1210.859 kb on + strand at 1210.859 kb on + strand at 1210.859 kb on + strand at 1210.859 kb on + strand at 1210.860 kb on - strand at 1210.860 kb on - strand at 1210.860 kb on - strand at 1210.860 kb on - strand at 1210.860 kb on - strand at 1210.861 kb on + strand at 1210.861 kb on + strand at 1210.861 kb on + strand at 1210.873 kb on + strand at 1210.890 kb on + strand at 1210.890 kb on + strand at 1210.890 kb on + strand at 1210.890 kb on + strand at 1210.890 kb on + strand at 1210.891 kb on - strand at 1210.891 kb on - strand at 1210.891 kb on - strand at 1210.891 kb on - strand at 1210.891 kb on - strand at 1210.891 kb on - strand at 1210.891 kb on - strand at 1210.921 kb on - strand at 1210.958 kb on + strand at 1210.959 kb on - strand at 1210.969 kb on + strand at 1210.970 kb on - strand at 1210.970 kb on - strand at 1210.995 kb on - strand at 1210.995 kb on - strand at 1210.995 kb on - strand at 1211.040 kb on + strand at 1211.416 kb on + strand, within Psyr_1067 at 1211.416 kb on + strand, within Psyr_1067 at 1211.417 kb on - strand, within Psyr_1067 at 1211.417 kb on - strand, within Psyr_1067 at 1211.422 kb on - strand, within Psyr_1067
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 1,208,342 + Psyr_1065 0.43 -0.1 1,208,342 + Psyr_1065 0.43 +0.4 1,208,343 - Psyr_1065 0.43 -0.3 1,208,550 - Psyr_1065 0.60 -0.5 1,208,694 - Psyr_1065 0.73 -0.0 1,208,857 - Psyr_1065 0.86 +0.4 1,208,950 + -0.5 1,208,950 + -0.0 1,209,050 - +0.9 1,209,063 - -1.3 1,209,063 - +0.6 1,209,079 - -0.9 1,209,097 + +0.4 1,209,147 + -0.0 1,209,148 - +0.1 1,209,150 + +0.9 1,209,150 + -1.7 1,209,150 + -1.5 1,209,151 - -0.7 1,209,151 - -1.0 1,209,151 - -1.0 1,209,157 - +0.9 1,209,265 - -0.9 1,209,294 + +1.2 1,209,294 + +2.9 1,209,295 - +0.1 1,209,357 - +0.4 1,209,357 - -0.2 1,209,357 - +1.1 1,209,375 + +1.6 1,209,375 + -1.0 1,209,376 - -0.1 1,209,376 - +0.1 1,209,376 - +0.9 1,209,376 - +0.3 1,209,580 + Psyr_1066 0.19 +0.6 1,209,581 - Psyr_1066 0.19 +0.3 1,209,599 + Psyr_1066 0.21 -0.7 1,209,788 + Psyr_1066 0.34 +0.9 1,209,949 + Psyr_1066 0.46 +0.9 1,209,950 - Psyr_1066 0.46 -0.6 1,209,950 - Psyr_1066 0.46 -2.0 1,209,950 - Psyr_1066 0.46 +0.5 1,209,984 + Psyr_1066 0.48 +1.4 1,210,088 + Psyr_1066 0.56 -0.1 1,210,088 + Psyr_1066 0.56 -0.0 1,210,088 + Psyr_1066 0.56 -1.0 1,210,088 + Psyr_1066 0.56 +0.2 1,210,088 + Psyr_1066 0.56 +0.1 1,210,089 - Psyr_1066 0.56 -0.3 1,210,089 - Psyr_1066 0.56 -0.1 1,210,089 - Psyr_1066 0.56 +0.1 1,210,089 - Psyr_1066 0.56 -1.3 1,210,382 + Psyr_1066 0.77 +0.6 1,210,382 + Psyr_1066 0.77 -0.7 1,210,382 + Psyr_1066 0.77 -0.3 1,210,382 + Psyr_1066 0.77 -0.8 1,210,382 + Psyr_1066 0.77 -0.4 1,210,383 - Psyr_1066 0.77 -0.9 1,210,383 - Psyr_1066 0.77 -0.2 1,210,383 - Psyr_1066 0.77 +0.4 1,210,383 - Psyr_1066 0.77 +1.1 1,210,383 - Psyr_1066 0.77 -0.7 1,210,383 - Psyr_1066 0.77 +0.9 1,210,424 + Psyr_1066 0.80 +0.0 1,210,424 + Psyr_1066 0.80 +0.2 1,210,424 + Psyr_1066 0.80 +0.5 1,210,424 + Psyr_1066 0.80 -0.5 1,210,424 + Psyr_1066 0.80 +1.0 1,210,425 - Psyr_1066 0.80 +1.2 1,210,425 - Psyr_1066 0.80 -0.1 1,210,425 - Psyr_1066 0.80 -1.8 1,210,425 - Psyr_1066 0.80 -0.4 1,210,425 - Psyr_1066 0.80 -1.5 1,210,425 - Psyr_1066 0.80 -0.6 1,210,425 - Psyr_1066 0.80 -2.3 1,210,425 - Psyr_1066 0.80 -0.4 1,210,425 - Psyr_1066 0.80 +0.5 1,210,605 - +0.9 1,210,703 + +2.2 1,210,704 - +0.9 1,210,704 - -0.2 1,210,720 + +0.9 1,210,720 + +0.4 1,210,720 + +0.5 1,210,720 + +0.4 1,210,721 - -0.4 1,210,721 - +0.9 1,210,721 - -0.2 1,210,721 - -0.3 1,210,721 - +1.6 1,210,746 + -0.1 1,210,746 + -0.8 1,210,746 + +0.3 1,210,765 - +0.4 1,210,765 - -1.8 1,210,765 - -1.3 1,210,798 - -1.0 1,210,798 - +1.5 1,210,835 - -0.1 1,210,859 + -0.6 1,210,859 + -1.3 1,210,859 + -0.5 1,210,859 + +0.1 1,210,859 + -0.1 1,210,860 - -0.5 1,210,860 - +1.1 1,210,860 - -0.7 1,210,860 - -0.8 1,210,860 - -2.0 1,210,861 + -0.5 1,210,861 + -1.7 1,210,861 + -1.4 1,210,873 + -0.1 1,210,890 + -1.6 1,210,890 + -1.6 1,210,890 + -2.1 1,210,890 + +0.5 1,210,890 + -1.1 1,210,891 - +0.4 1,210,891 - -0.5 1,210,891 - -0.9 1,210,891 - +0.3 1,210,891 - +0.9 1,210,891 - -1.3 1,210,891 - +0.9 1,210,921 - -1.3 1,210,958 + -2.0 1,210,959 - +0.9 1,210,969 + -0.1 1,210,970 - +1.9 1,210,970 - -1.5 1,210,995 - +0.1 1,210,995 - +0.7 1,210,995 - +0.3 1,211,040 + -1.1 1,211,416 + Psyr_1067 0.76 -0.9 1,211,416 + Psyr_1067 0.76 -2.5 1,211,417 - Psyr_1067 0.76 -0.5 1,211,417 - Psyr_1067 0.76 -0.3 1,211,422 - Psyr_1067 0.77 -0.3
Or see this region's nucleotide sequence