Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0902

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0900 and Psyr_0901 are separated by 57 nucleotidesPsyr_0901 and Psyr_0902 are separated by 42 nucleotidesPsyr_0902 and Psyr_0903 are separated by 179 nucleotides Psyr_0900: Psyr_0900 - TRAP dicarboxylate transporter- DctP subunit, at 1,019,056 to 1,020,081 _0900 Psyr_0901: Psyr_0901 - gluconolactonase, at 1,020,139 to 1,021,023 _0901 Psyr_0902: Psyr_0902 - conserved hypothetical protein, at 1,021,066 to 1,021,893 _0902 Psyr_0903: Psyr_0903 - outer membrane porin, at 1,022,073 to 1,023,341 _0903 Position (kb) 1021 1022Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1020.086 kb on - strandat 1020.384 kb on - strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.623 kb on + strand, within Psyr_0901at 1020.623 kb on + strand, within Psyr_0901at 1020.630 kb on - strand, within Psyr_0901at 1021.067 kb on + strandat 1021.067 kb on + strandat 1021.112 kb on + strandat 1021.113 kb on - strandat 1021.196 kb on + strand, within Psyr_0902at 1021.196 kb on + strand, within Psyr_0902at 1021.197 kb on - strand, within Psyr_0902at 1021.286 kb on + strand, within Psyr_0902at 1021.286 kb on + strand, within Psyr_0902at 1021.286 kb on + strand, within Psyr_0902at 1021.287 kb on - strand, within Psyr_0902at 1021.287 kb on - strand, within Psyr_0902at 1021.418 kb on + strand, within Psyr_0902at 1021.419 kb on - strand, within Psyr_0902at 1021.419 kb on - strand, within Psyr_0902at 1021.419 kb on - strand, within Psyr_0902at 1021.460 kb on + strand, within Psyr_0902at 1021.460 kb on + strand, within Psyr_0902at 1021.460 kb on + strand, within Psyr_0902at 1021.461 kb on - strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.463 kb on + strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.464 kb on - strand, within Psyr_0902at 1021.514 kb on + strand, within Psyr_0902at 1021.514 kb on + strand, within Psyr_0902at 1021.514 kb on + strand, within Psyr_0902at 1021.583 kb on + strand, within Psyr_0902at 1021.583 kb on + strand, within Psyr_0902at 1021.583 kb on + strand, within Psyr_0902at 1021.584 kb on - strand, within Psyr_0902at 1021.584 kb on - strand, within Psyr_0902at 1021.605 kb on + strand, within Psyr_0902at 1021.693 kb on + strand, within Psyr_0902at 1021.693 kb on + strand, within Psyr_0902at 1021.693 kb on + strand, within Psyr_0902at 1021.794 kb on - strand, within Psyr_0902at 1021.816 kb on + strandat 1021.816 kb on + strandat 1021.817 kb on - strandat 1021.817 kb on - strandat 1021.817 kb on - strandat 1021.817 kb on - strandat 1021.879 kb on - strandat 1021.961 kb on + strandat 1021.962 kb on - strandat 1021.990 kb on - strandat 1022.020 kb on + strandat 1022.028 kb on + strandat 1022.087 kb on + strandat 1022.087 kb on + strandat 1022.088 kb on - strandat 1022.088 kb on - strandat 1022.088 kb on - strandat 1022.088 kb on - strandat 1022.093 kb on - strandat 1022.093 kb on - strandat 1022.093 kb on - strandat 1022.196 kb on + strandat 1022.196 kb on + strandat 1022.197 kb on - strandat 1022.197 kb on - strandat 1022.197 kb on - strandat 1022.197 kb on - strandat 1022.197 kb on - strandat 1022.201 kb on + strand, within Psyr_0903at 1022.202 kb on - strand, within Psyr_0903at 1022.203 kb on + strand, within Psyr_0903at 1022.278 kb on + strand, within Psyr_0903at 1022.279 kb on - strand, within Psyr_0903at 1022.326 kb on + strand, within Psyr_0903at 1022.327 kb on - strandat 1022.327 kb on - strand, within Psyr_0903at 1022.327 kb on - strand, within Psyr_0903at 1022.327 kb on - strand, within Psyr_0903at 1022.369 kb on - strand, within Psyr_0903at 1022.369 kb on - strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.380 kb on + strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.381 kb on - strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.464 kb on + strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.465 kb on - strand, within Psyr_0903at 1022.504 kb on - strand, within Psyr_0903at 1022.504 kb on - strand, within Psyr_0903at 1022.563 kb on + strand, within Psyr_0903at 1022.563 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.635 kb on + strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.636 kb on - strand, within Psyr_0903at 1022.668 kb on - strand, within Psyr_0903at 1022.675 kb on + strand, within Psyr_0903at 1022.676 kb on - strand, within Psyr_0903at 1022.676 kb on - strand, within Psyr_0903at 1022.676 kb on - strand, within Psyr_0903at 1022.676 kb on - strand, within Psyr_0903at 1022.676 kb on - strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.695 kb on + strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903at 1022.696 kb on - strand, within Psyr_0903

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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1,020,086 - -1.2
1,020,384 - Psyr_0901 0.28 -0.4
1,020,533 + Psyr_0901 0.45 +1.0
1,020,533 + Psyr_0901 0.45 +1.3
1,020,533 + Psyr_0901 0.45 +0.1
1,020,533 + Psyr_0901 0.45 -0.4
1,020,533 + Psyr_0901 0.45 +0.1
1,020,533 + Psyr_0901 0.45 -1.1
1,020,533 + Psyr_0901 0.45 -1.6
1,020,533 + Psyr_0901 0.45 +0.1
1,020,533 + Psyr_0901 0.45 +0.1
1,020,533 + Psyr_0901 0.45 +0.7
1,020,533 + Psyr_0901 0.45 -0.8
1,020,533 + Psyr_0901 0.45 +0.7
1,020,533 + Psyr_0901 0.45 +0.6
1,020,533 + Psyr_0901 0.45 -0.7
1,020,533 + Psyr_0901 0.45 +0.7
1,020,534 - Psyr_0901 0.45 -0.5
1,020,534 - Psyr_0901 0.45 +0.1
1,020,534 - Psyr_0901 0.45 +1.9
1,020,534 - Psyr_0901 0.45 -0.8
1,020,534 - Psyr_0901 0.45 +1.7
1,020,534 - Psyr_0901 0.45 -1.0
1,020,534 - Psyr_0901 0.45 -0.5
1,020,534 - Psyr_0901 0.45 +1.1
1,020,534 - Psyr_0901 0.45 -3.4
1,020,534 - Psyr_0901 0.45 -0.6
1,020,534 - Psyr_0901 0.45 +1.0
1,020,534 - Psyr_0901 0.45 -0.5
1,020,534 - Psyr_0901 0.45 -0.1
1,020,623 + Psyr_0901 0.55 -1.7
1,020,623 + Psyr_0901 0.55 -1.3
1,020,630 - Psyr_0901 0.55 -0.4
1,021,067 + +0.1
1,021,067 + -0.3
1,021,112 + +0.3
1,021,113 - +0.8
1,021,196 + Psyr_0902 0.16 -0.6
1,021,196 + Psyr_0902 0.16 +0.2
1,021,197 - Psyr_0902 0.16 -0.6
1,021,286 + Psyr_0902 0.27 -0.7
1,021,286 + Psyr_0902 0.27 +0.9
1,021,286 + Psyr_0902 0.27 -0.7
1,021,287 - Psyr_0902 0.27 -0.5
1,021,287 - Psyr_0902 0.27 -0.3
1,021,418 + Psyr_0902 0.43 -0.4
1,021,419 - Psyr_0902 0.43 +0.3
1,021,419 - Psyr_0902 0.43 -0.4
1,021,419 - Psyr_0902 0.43 +0.7
1,021,460 + Psyr_0902 0.48 -0.3
1,021,460 + Psyr_0902 0.48 -0.1
1,021,460 + Psyr_0902 0.48 -0.7
1,021,461 - Psyr_0902 0.48 -0.5
1,021,463 + Psyr_0902 0.48 -0.3
1,021,463 + Psyr_0902 0.48 +0.2
1,021,463 + Psyr_0902 0.48 +2.5
1,021,463 + Psyr_0902 0.48 -1.6
1,021,464 - Psyr_0902 0.48 -0.7
1,021,464 - Psyr_0902 0.48 +0.3
1,021,464 - Psyr_0902 0.48 -0.1
1,021,464 - Psyr_0902 0.48 -0.4
1,021,514 + Psyr_0902 0.54 -0.9
1,021,514 + Psyr_0902 0.54 -0.5
1,021,514 + Psyr_0902 0.54 -0.9
1,021,583 + Psyr_0902 0.62 -1.9
1,021,583 + Psyr_0902 0.62 -0.5
1,021,583 + Psyr_0902 0.62 -0.1
1,021,584 - Psyr_0902 0.63 -0.8
1,021,584 - Psyr_0902 0.63 -1.0
1,021,605 + Psyr_0902 0.65 -1.6
1,021,693 + Psyr_0902 0.76 -0.8
1,021,693 + Psyr_0902 0.76 -0.3
1,021,693 + Psyr_0902 0.76 +0.4
1,021,794 - Psyr_0902 0.88 -0.5
1,021,816 + +0.9
1,021,816 + +1.5
1,021,817 - -0.6
1,021,817 - +0.1
1,021,817 - -1.4
1,021,817 - -0.3
1,021,879 - -0.4
1,021,961 + -1.1
1,021,962 - +0.1
1,021,990 - -0.3
1,022,020 + -1.1
1,022,028 + -0.4
1,022,087 + +2.0
1,022,087 + +0.0
1,022,088 - +0.4
1,022,088 - -0.4
1,022,088 - -0.1
1,022,088 - -0.1
1,022,093 - -0.4
1,022,093 - -0.8
1,022,093 - +0.2
1,022,196 + +0.2
1,022,196 + +0.4
1,022,197 - +1.7
1,022,197 - +1.3
1,022,197 - -1.9
1,022,197 - +0.1
1,022,197 - -0.3
1,022,201 + Psyr_0903 0.10 -0.0
1,022,202 - Psyr_0903 0.10 -1.9
1,022,203 + Psyr_0903 0.10 -0.6
1,022,278 + Psyr_0903 0.16 +1.4
1,022,279 - Psyr_0903 0.16 +1.7
1,022,326 + Psyr_0903 0.20 -0.9
1,022,327 - +0.7
1,022,327 - Psyr_0903 0.20 -0.0
1,022,327 - Psyr_0903 0.20 +1.5
1,022,327 - Psyr_0903 0.20 -0.6
1,022,369 - Psyr_0903 0.23 +0.6
1,022,369 - Psyr_0903 0.23 +0.2
1,022,380 + Psyr_0903 0.24 +1.0
1,022,380 + Psyr_0903 0.24 +0.1
1,022,380 + Psyr_0903 0.24 +2.1
1,022,380 + Psyr_0903 0.24 -0.9
1,022,381 - Psyr_0903 0.24 -0.6
1,022,381 - Psyr_0903 0.24 -1.3
1,022,381 - Psyr_0903 0.24 +0.0
1,022,381 - Psyr_0903 0.24 -0.3
1,022,381 - Psyr_0903 0.24 -0.8
1,022,464 + Psyr_0903 0.31 +1.2
1,022,464 + Psyr_0903 0.31 -1.1
1,022,464 + Psyr_0903 0.31 -1.3
1,022,464 + Psyr_0903 0.31 -0.6
1,022,464 + Psyr_0903 0.31 -0.0
1,022,464 + Psyr_0903 0.31 -1.6
1,022,464 + Psyr_0903 0.31 +0.2
1,022,465 - Psyr_0903 0.31 -0.9
1,022,465 - Psyr_0903 0.31 -0.0
1,022,465 - Psyr_0903 0.31 -0.0
1,022,465 - Psyr_0903 0.31 +0.1
1,022,465 - Psyr_0903 0.31 -0.4
1,022,465 - Psyr_0903 0.31 +0.2
1,022,465 - Psyr_0903 0.31 -0.3
1,022,465 - Psyr_0903 0.31 -0.1
1,022,465 - Psyr_0903 0.31 -1.1
1,022,465 - Psyr_0903 0.31 -0.0
1,022,465 - Psyr_0903 0.31 -1.0
1,022,504 - Psyr_0903 0.34 -0.3
1,022,504 - Psyr_0903 0.34 -0.6
1,022,563 + Psyr_0903 0.39 +0.9
1,022,563 + Psyr_0903 0.39 -0.4
1,022,635 + Psyr_0903 0.44 -0.6
1,022,635 + Psyr_0903 0.44 +0.5
1,022,635 + Psyr_0903 0.44 -0.7
1,022,635 + Psyr_0903 0.44 +1.2
1,022,635 + Psyr_0903 0.44 +1.2
1,022,635 + Psyr_0903 0.44 -0.3
1,022,636 - Psyr_0903 0.44 +0.7
1,022,636 - Psyr_0903 0.44 -0.1
1,022,636 - Psyr_0903 0.44 -0.9
1,022,636 - Psyr_0903 0.44 +0.9
1,022,636 - Psyr_0903 0.44 -0.4
1,022,636 - Psyr_0903 0.44 -0.4
1,022,636 - Psyr_0903 0.44 +1.7
1,022,636 - Psyr_0903 0.44 -1.0
1,022,636 - Psyr_0903 0.44 -1.9
1,022,668 - Psyr_0903 0.47 -0.6
1,022,675 + Psyr_0903 0.47 -0.3
1,022,676 - Psyr_0903 0.48 -0.2
1,022,676 - Psyr_0903 0.48 -1.0
1,022,676 - Psyr_0903 0.48 -1.0
1,022,676 - Psyr_0903 0.48 -0.9
1,022,676 - Psyr_0903 0.48 -0.7
1,022,695 + Psyr_0903 0.49 +0.4
1,022,695 + Psyr_0903 0.49 +1.4
1,022,695 + Psyr_0903 0.49 -0.7
1,022,696 - Psyr_0903 0.49 -1.6
1,022,696 - Psyr_0903 0.49 +0.1
1,022,696 - Psyr_0903 0.49 -0.1
1,022,696 - Psyr_0903 0.49 +0.1
1,022,696 - Psyr_0903 0.49 -1.1

Or see this region's nucleotide sequence