Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0837 and Psyr_0838 are separated by 30 nucleotides Psyr_0838 and Psyr_0839 are separated by 157 nucleotides Psyr_0839 and Psyr_0840 are separated by 366 nucleotides Psyr_0840 and Psyr_0841 are separated by 100 nucleotides
Psyr_0837: Psyr_0837 - Sugar fermentation stimulation protein, at 949,369 to 950,082
_0837
Psyr_0838: Psyr_0838 - Rieske [2Fe-2S] region, at 950,113 to 950,511
_0838
Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454
_0839
Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165
_0840
Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936
_0841
Position (kb) 950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 949.762 kb on + strand, within Psyr_0837 at 949.762 kb on + strand, within Psyr_0837 at 949.763 kb on - strand, within Psyr_0837 at 949.763 kb on - strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.903 kb on + strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 949.904 kb on - strand, within Psyr_0837 at 950.094 kb on - strand at 950.333 kb on + strand, within Psyr_0838 at 950.453 kb on + strand, within Psyr_0838 at 950.453 kb on + strand, within Psyr_0838 at 950.454 kb on - strand, within Psyr_0838 at 950.536 kb on + strand at 950.536 kb on + strand at 950.596 kb on + strand at 950.596 kb on + strand at 950.597 kb on - strand at 950.597 kb on - strand at 950.597 kb on - strand at 950.600 kb on + strand at 950.601 kb on - strand at 950.601 kb on - strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.632 kb on + strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.633 kb on - strand at 950.668 kb on + strand at 950.668 kb on + strand at 950.668 kb on + strand at 950.668 kb on + strand at 950.669 kb on - strand at 950.669 kb on - strand at 950.881 kb on + strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 951.085 kb on + strand, within Psyr_0839 at 951.085 kb on + strand, within Psyr_0839 at 951.253 kb on - strand, within Psyr_0839 at 951.253 kb on - strand, within Psyr_0839 at 951.293 kb on - strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.535 kb on + strand at 951.677 kb on + strand at 951.678 kb on - strand at 951.688 kb on + strand at 951.702 kb on + strand at 951.702 kb on + strand at 951.703 kb on - strand at 951.710 kb on - strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.991 kb on - strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.208 kb on + strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.267 kb on + strand at 952.267 kb on + strand at 952.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 949,762 + Psyr_0837 0.55 +0.2 949,762 + Psyr_0837 0.55 +0.0 949,763 - Psyr_0837 0.55 +0.7 949,763 - Psyr_0837 0.55 -0.4 949,903 + Psyr_0837 0.75 -0.2 949,903 + Psyr_0837 0.75 +0.7 949,903 + Psyr_0837 0.75 +1.3 949,904 - Psyr_0837 0.75 -0.5 949,904 - Psyr_0837 0.75 +0.7 949,904 - Psyr_0837 0.75 -0.1 949,904 - Psyr_0837 0.75 +0.9 949,904 - Psyr_0837 0.75 +0.1 949,904 - Psyr_0837 0.75 -2.5 950,094 - -0.6 950,333 + Psyr_0838 0.55 -0.3 950,453 + Psyr_0838 0.85 -1.3 950,453 + Psyr_0838 0.85 +3.0 950,454 - Psyr_0838 0.85 -0.9 950,536 + +0.2 950,536 + -0.3 950,596 + -0.0 950,596 + -0.1 950,597 - -1.3 950,597 - -0.3 950,597 - +0.0 950,600 + -0.9 950,601 - -0.4 950,601 - +1.7 950,632 + -0.3 950,632 + +0.2 950,632 + +1.1 950,632 + +0.4 950,632 + -0.1 950,632 + +0.3 950,632 + -1.5 950,633 - -1.4 950,633 - +0.5 950,633 - -0.7 950,633 - -0.9 950,633 - -0.3 950,633 - +0.3 950,633 - -1.4 950,633 - -0.9 950,633 - -0.1 950,633 - -0.1 950,633 - +0.7 950,633 - -0.5 950,633 - -1.2 950,633 - -1.3 950,633 - +0.9 950,633 - -3.0 950,668 + -1.9 950,668 + +0.2 950,668 + +2.7 950,668 + -0.5 950,669 - +1.2 950,669 - +0.7 950,881 + Psyr_0839 0.27 +1.1 950,882 - Psyr_0839 0.27 +0.7 950,882 - Psyr_0839 0.27 -1.1 950,882 - Psyr_0839 0.27 +1.7 950,949 + Psyr_0839 0.36 +0.8 950,949 + Psyr_0839 0.36 +0.5 950,949 + Psyr_0839 0.36 -0.3 950,949 + Psyr_0839 0.36 -0.3 950,950 - Psyr_0839 0.36 -1.2 950,950 - Psyr_0839 0.36 -0.3 950,950 - Psyr_0839 0.36 +0.5 950,950 - Psyr_0839 0.36 -0.9 950,950 - Psyr_0839 0.36 +0.9 950,950 - Psyr_0839 0.36 -0.4 951,085 + Psyr_0839 0.53 -0.5 951,085 + Psyr_0839 0.53 +0.8 951,253 - Psyr_0839 0.74 -1.6 951,253 - Psyr_0839 0.74 -0.3 951,293 - Psyr_0839 0.79 +0.2 951,314 + Psyr_0839 0.82 +0.7 951,314 + Psyr_0839 0.82 +1.0 951,314 + Psyr_0839 0.82 +1.3 951,314 + Psyr_0839 0.82 -1.1 951,315 - Psyr_0839 0.82 +0.5 951,315 - Psyr_0839 0.82 +1.1 951,315 - Psyr_0839 0.82 +0.8 951,315 - Psyr_0839 0.82 -0.3 951,535 + -0.9 951,677 + -1.5 951,678 - +0.4 951,688 + -2.1 951,702 + +0.1 951,702 + +0.1 951,703 - -0.0 951,710 - -0.4 951,767 + -0.3 951,767 + -0.7 951,767 + -1.5 951,767 + +0.6 951,767 + +0.5 951,767 + +1.0 951,767 + -0.1 951,767 + -0.2 951,767 + +0.4 951,767 + -1.5 951,767 + +0.4 951,767 + -0.6 951,768 - -0.4 951,768 - -0.2 951,768 - -0.3 951,768 - +0.1 951,768 - +0.1 951,768 - -0.2 951,768 - -2.1 951,768 - -1.1 951,991 - Psyr_0840 0.49 +0.7 952,129 + Psyr_0840 0.89 -0.7 952,129 + Psyr_0840 0.89 +1.0 952,129 + Psyr_0840 0.89 +0.4 952,130 - Psyr_0840 0.90 -1.0 952,130 - Psyr_0840 0.90 -0.2 952,130 - Psyr_0840 0.90 -0.8 952,130 - Psyr_0840 0.90 +0.8 952,130 - Psyr_0840 0.90 +0.2 952,130 - Psyr_0840 0.90 -0.9 952,130 - Psyr_0840 0.90 -0.5 952,130 - Psyr_0840 0.90 +1.1 952,130 - Psyr_0840 0.90 -1.1 952,131 + +0.5 952,131 + +0.7 952,131 + +0.3 952,131 + +0.0 952,131 + -1.6 952,131 + +0.8 952,131 + +0.8 952,131 + +1.2 952,131 + -0.0 952,131 + -0.1 952,131 + +0.7 952,131 + +0.7 952,131 + +0.9 952,132 - +0.7 952,132 - +0.4 952,132 - -0.3 952,132 - -1.3 952,132 - +0.7 952,132 - -0.3 952,132 - +0.4 952,132 - +0.1 952,132 - -0.3 952,208 + +0.5 952,209 - +0.4 952,209 - +0.7 952,209 - -1.3 952,267 + +0.9 952,267 + +0.6 952,268 - +0.2
Or see this region's nucleotide sequence