Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0775

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0774 and Psyr_0775 are separated by 14 nucleotidesPsyr_0775 and Psyr_0776 are separated by 10 nucleotides Psyr_0774: Psyr_0774 - monosaccharide ABC transporter membrane protein, CUT2 family, at 878,618 to 879,637 _0774 Psyr_0775: Psyr_0775 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 879,652 to 880,428 _0775 Psyr_0776: Psyr_0776 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 880,439 to 881,383 _0776 Position (kb) 879 880 881Strain fitness (log2 ratio) -2 -1 0 1 2at 878.654 kb on + strandat 878.654 kb on + strandat 878.654 kb on + strandat 878.654 kb on + strandat 878.655 kb on - strandat 878.655 kb on - strandat 878.655 kb on - strandat 878.655 kb on - strandat 878.687 kb on + strandat 878.687 kb on + strandat 878.716 kb on - strandat 878.768 kb on - strand, within Psyr_0774at 878.946 kb on + strand, within Psyr_0774at 878.946 kb on + strand, within Psyr_0774at 879.168 kb on + strand, within Psyr_0774at 879.168 kb on + strand, within Psyr_0774at 879.203 kb on - strand, within Psyr_0774at 879.203 kb on - strand, within Psyr_0774at 879.491 kb on + strand, within Psyr_0774at 879.681 kb on + strandat 879.681 kb on + strandat 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.985 kb on + strand, within Psyr_0775at 880.355 kb on - strandat 880.381 kb on - strandat 880.440 kb on + strandat 880.440 kb on + strandat 880.440 kb on + strandat 880.441 kb on - strandat 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.728 kb on + strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.729 kb on - strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.887 kb on + strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.888 kb on - strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.947 kb on + strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.948 kb on - strand, within Psyr_0776at 880.959 kb on + strand, within Psyr_0776at 881.089 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.140 kb on + strand, within Psyr_0776at 881.141 kb on - strand, within Psyr_0776at 881.141 kb on - strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.142 kb on + strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strandat 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.143 kb on - strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.256 kb on + strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.257 kb on - strand, within Psyr_0776at 881.395 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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878,654 + +0.6
878,654 + +0.2
878,654 + -0.3
878,654 + +0.6
878,655 - -0.7
878,655 - -0.2
878,655 - -0.5
878,655 - -0.8
878,687 + -0.5
878,687 + -1.5
878,716 - -0.3
878,768 - Psyr_0774 0.15 -0.3
878,946 + Psyr_0774 0.32 -0.9
878,946 + Psyr_0774 0.32 -0.1
879,168 + Psyr_0774 0.54 -0.9
879,168 + Psyr_0774 0.54 -0.0
879,203 - Psyr_0774 0.57 -1.4
879,203 - Psyr_0774 0.57 -0.1
879,491 + Psyr_0774 0.86 +1.3
879,681 + -0.2
879,681 + +0.6
879,758 + Psyr_0775 0.14 -0.1
879,758 + Psyr_0775 0.14 +0.0
879,758 + Psyr_0775 0.14 -0.8
879,758 + Psyr_0775 0.14 -0.4
879,758 + Psyr_0775 0.14 -1.2
879,758 + Psyr_0775 0.14 +1.6
879,758 + Psyr_0775 0.14 -0.8
879,758 + Psyr_0775 0.14 +0.1
879,758 + Psyr_0775 0.14 -0.1
879,758 + Psyr_0775 0.14 -0.4
879,758 + Psyr_0775 0.14 -1.4
879,758 + Psyr_0775 0.14 -2.4
879,758 + Psyr_0775 0.14 -0.4
879,758 + Psyr_0775 0.14 -0.8
879,758 + Psyr_0775 0.14 -1.0
879,759 - Psyr_0775 0.14 -1.2
879,759 - Psyr_0775 0.14 -0.5
879,759 - Psyr_0775 0.14 -1.4
879,759 - Psyr_0775 0.14 -0.4
879,759 - Psyr_0775 0.14 -0.7
879,759 - Psyr_0775 0.14 +0.6
879,759 - Psyr_0775 0.14 -1.2
879,759 - Psyr_0775 0.14 -0.7
879,759 - Psyr_0775 0.14 -0.8
879,985 + Psyr_0775 0.43 -0.2
880,355 - -0.1
880,381 - -0.2
880,440 + -0.1
880,440 + +0.6
880,440 + +0.3
880,441 - -0.2
880,728 + Psyr_0776 0.31 -1.4
880,728 + Psyr_0776 0.31 -2.2
880,728 + Psyr_0776 0.31 +0.3
880,728 + Psyr_0776 0.31 -0.7
880,729 - Psyr_0776 0.31 -0.7
880,729 - Psyr_0776 0.31 +0.6
880,729 - Psyr_0776 0.31 +0.6
880,729 - Psyr_0776 0.31 +0.1
880,887 + Psyr_0776 0.47 +0.0
880,887 + Psyr_0776 0.47 -0.1
880,887 + Psyr_0776 0.47 -0.8
880,887 + Psyr_0776 0.47 -0.2
880,887 + Psyr_0776 0.47 -0.5
880,887 + Psyr_0776 0.47 +0.3
880,888 - Psyr_0776 0.48 -0.4
880,888 - Psyr_0776 0.48 +0.1
880,888 - Psyr_0776 0.48 +0.3
880,888 - Psyr_0776 0.48 -1.1
880,888 - Psyr_0776 0.48 -0.6
880,888 - Psyr_0776 0.48 -0.9
880,888 - Psyr_0776 0.48 -0.6
880,947 + Psyr_0776 0.54 +0.6
880,947 + Psyr_0776 0.54 +0.5
880,947 + Psyr_0776 0.54 -1.1
880,948 - Psyr_0776 0.54 -0.2
880,948 - Psyr_0776 0.54 +1.5
880,948 - Psyr_0776 0.54 -0.2
880,948 - Psyr_0776 0.54 +0.8
880,959 + Psyr_0776 0.55 -0.2
881,089 + Psyr_0776 0.69 +0.6
881,140 + Psyr_0776 0.74 -0.6
881,140 + Psyr_0776 0.74 -0.9
881,140 + Psyr_0776 0.74 -0.2
881,140 + Psyr_0776 0.74 +0.3
881,141 - Psyr_0776 0.74 -1.5
881,141 - Psyr_0776 0.74 -0.2
881,142 + Psyr_0776 0.74 -0.1
881,142 + Psyr_0776 0.74 -0.2
881,142 + Psyr_0776 0.74 +0.3
881,142 + Psyr_0776 0.74 -0.2
881,142 + Psyr_0776 0.74 -0.4
881,142 + Psyr_0776 0.74 -1.4
881,142 + Psyr_0776 0.74 -0.4
881,143 - Psyr_0776 0.74 -0.5
881,143 - +2.2
881,143 - Psyr_0776 0.74 +1.6
881,143 - Psyr_0776 0.74 -0.1
881,143 - Psyr_0776 0.74 +0.6
881,143 - Psyr_0776 0.74 -2.2
881,143 - Psyr_0776 0.74 +0.4
881,256 + Psyr_0776 0.86 -0.9
881,256 + Psyr_0776 0.86 -1.7
881,256 + Psyr_0776 0.86 -0.6
881,257 - Psyr_0776 0.87 +0.1
881,257 - Psyr_0776 0.87 -2.5
881,257 - Psyr_0776 0.87 -1.9
881,257 - Psyr_0776 0.87 -0.9
881,395 + +1.0

Or see this region's nucleotide sequence