Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0739 and Psyr_0740 are separated by 273 nucleotides Psyr_0740 and Psyr_0741 are separated by 80 nucleotides Psyr_0741 and Psyr_0742 are separated by 52 nucleotides
Psyr_0739: Psyr_0739 - CDS, at 843,593 to 844,246
_0739
Psyr_0740: Psyr_0740 - CDS, at 844,520 to 844,927
_0740
Psyr_0741: Psyr_0741 - transcriptional regulator, TetR family, at 845,008 to 845,643
_0741
Psyr_0742: Psyr_0742 - Enoyl-CoA hydratase/isomerase, at 845,696 to 846,529
_0742
Position (kb) 844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 843.552 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.556 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.561 kb on - strand at 843.566 kb on - strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.628 kb on + strand at 843.628 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.749 kb on + strand, within Psyr_0739 at 843.749 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.756 kb on + strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.757 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 843.808 kb on - strand, within Psyr_0739 at 844.020 kb on + strand, within Psyr_0739 at 844.059 kb on - strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.103 kb on + strand, within Psyr_0739 at 844.104 kb on - strand, within Psyr_0739 at 844.203 kb on + strand at 844.203 kb on + strand at 844.228 kb on + strand at 844.416 kb on - strand at 844.457 kb on + strand at 844.500 kb on + strand at 844.501 kb on - strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.557 kb on + strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.558 kb on - strand at 844.634 kb on + strand, within Psyr_0740 at 844.634 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.656 kb on + strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.657 kb on - strand, within Psyr_0740 at 844.737 kb on - strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.884 kb on + strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.885 kb on - strand, within Psyr_0740 at 844.902 kb on - strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.948 kb on + strand at 844.949 kb on - strand at 844.949 kb on - strand at 844.949 kb on - strand at 844.952 kb on + strand at 844.952 kb on + strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.953 kb on - strand at 844.960 kb on + strand at 844.961 kb on - strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.998 kb on + strand at 844.999 kb on - strand at 844.999 kb on - strand at 844.999 kb on - strand at 844.999 kb on - strand at 845.151 kb on + strand, within Psyr_0741 at 845.151 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.183 kb on + strand, within Psyr_0741 at 845.238 kb on + strand, within Psyr_0741 at 845.303 kb on + strand, within Psyr_0741 at 845.303 kb on + strand, within Psyr_0741 at 845.304 kb on - strand, within Psyr_0741 at 845.311 kb on + strand, within Psyr_0741 at 845.312 kb on - strand, within Psyr_0741 at 845.312 kb on - strand, within Psyr_0741 at 845.312 kb on - strand, within Psyr_0741 at 845.352 kb on + strand, within Psyr_0741 at 845.352 kb on + strand, within Psyr_0741 at 845.352 kb on + strand, within Psyr_0741 at 845.353 kb on - strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.435 kb on + strand, within Psyr_0741 at 845.495 kb on - strand, within Psyr_0741 at 845.495 kb on - strand, within Psyr_0741 at 845.651 kb on - strand at 845.651 kb on - strand at 845.685 kb on + strand at 845.686 kb on - strand at 845.697 kb on + strand at 845.697 kb on + strand at 845.697 kb on + strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.701 kb on + strand at 845.701 kb on + strand at 845.701 kb on + strand at 845.727 kb on + strand at 845.821 kb on + strand, within Psyr_0742 at 845.845 kb on + strand, within Psyr_0742 at 845.845 kb on + strand, within Psyr_0742 at 845.845 kb on + strand, within Psyr_0742 at 845.846 kb on - strand, within Psyr_0742
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 843,552 - -0.8 843,556 - -0.0 843,556 - +0.1 843,556 - -1.7 843,556 - -1.5 843,561 - -2.0 843,561 - -0.6 843,561 - -2.2 843,566 - -1.2 843,585 + -1.1 843,585 + +0.1 843,586 - +0.1 843,586 - -0.7 843,628 + +0.6 843,628 + +0.2 843,638 + -0.7 843,638 + +0.3 843,638 + +0.2 843,638 + +3.4 843,639 - -1.7 843,639 - -0.3 843,639 - -0.9 843,639 - -0.1 843,749 + Psyr_0739 0.24 +0.3 843,749 + Psyr_0739 0.24 -0.9 843,756 + Psyr_0739 0.25 -0.5 843,756 + Psyr_0739 0.25 +0.4 843,757 - Psyr_0739 0.25 -1.9 843,757 - Psyr_0739 0.25 -0.0 843,757 - Psyr_0739 0.25 -1.0 843,757 - Psyr_0739 0.25 -0.1 843,808 - Psyr_0739 0.33 +0.1 843,808 - Psyr_0739 0.33 -0.4 844,020 + Psyr_0739 0.65 -1.0 844,059 - Psyr_0739 0.71 +0.5 844,103 + Psyr_0739 0.78 +0.4 844,103 + Psyr_0739 0.78 -0.7 844,103 + Psyr_0739 0.78 +1.1 844,104 - Psyr_0739 0.78 -0.0 844,203 + -0.6 844,203 + +0.8 844,228 + -1.2 844,416 - +0.3 844,457 + +0.5 844,500 + -0.4 844,501 - -0.6 844,557 + -0.4 844,557 + +0.4 844,557 + +0.4 844,557 + +1.1 844,558 - +0.3 844,558 - -0.1 844,558 - -0.5 844,558 - -1.5 844,558 - -1.5 844,634 + Psyr_0740 0.28 -0.4 844,634 + Psyr_0740 0.28 +0.6 844,656 + Psyr_0740 0.33 -0.7 844,656 + Psyr_0740 0.33 -0.4 844,656 + Psyr_0740 0.33 -0.2 844,656 + Psyr_0740 0.33 +0.3 844,656 + Psyr_0740 0.33 -0.1 844,656 + Psyr_0740 0.33 -0.2 844,656 + Psyr_0740 0.33 -1.8 844,656 + Psyr_0740 0.33 -0.7 844,656 + Psyr_0740 0.33 +0.1 844,656 + Psyr_0740 0.33 -0.9 844,656 + Psyr_0740 0.33 -0.4 844,656 + Psyr_0740 0.33 -0.9 844,656 + Psyr_0740 0.33 +0.4 844,656 + Psyr_0740 0.33 +1.6 844,656 + Psyr_0740 0.33 -0.2 844,656 + Psyr_0740 0.33 +0.2 844,656 + Psyr_0740 0.33 -0.2 844,656 + Psyr_0740 0.33 +0.6 844,656 + Psyr_0740 0.33 -0.9 844,657 - Psyr_0740 0.34 -0.4 844,657 - Psyr_0740 0.34 -0.9 844,657 - Psyr_0740 0.34 -1.0 844,657 - Psyr_0740 0.34 -0.7 844,657 - Psyr_0740 0.34 +0.2 844,657 - Psyr_0740 0.34 +1.2 844,657 - Psyr_0740 0.34 -2.9 844,657 - Psyr_0740 0.34 -0.5 844,657 - Psyr_0740 0.34 -0.1 844,657 - Psyr_0740 0.34 +0.6 844,657 - Psyr_0740 0.34 -1.4 844,657 - Psyr_0740 0.34 +1.9 844,657 - Psyr_0740 0.34 -2.5 844,657 - Psyr_0740 0.34 -1.3 844,657 - Psyr_0740 0.34 +0.4 844,657 - Psyr_0740 0.34 -0.2 844,657 - Psyr_0740 0.34 -1.4 844,657 - Psyr_0740 0.34 +1.1 844,657 - Psyr_0740 0.34 -1.1 844,657 - Psyr_0740 0.34 -1.7 844,657 - Psyr_0740 0.34 -0.0 844,657 - Psyr_0740 0.34 -0.5 844,657 - Psyr_0740 0.34 -0.4 844,737 - Psyr_0740 0.53 +1.1 844,884 + Psyr_0740 0.89 -0.9 844,884 + Psyr_0740 0.89 -0.9 844,884 + Psyr_0740 0.89 -2.1 844,884 + Psyr_0740 0.89 +3.0 844,884 + Psyr_0740 0.89 -0.8 844,884 + Psyr_0740 0.89 -3.2 844,884 + Psyr_0740 0.89 +0.4 844,884 + Psyr_0740 0.89 +1.0 844,884 + Psyr_0740 0.89 -0.2 844,884 + Psyr_0740 0.89 -0.7 844,884 + Psyr_0740 0.89 +1.3 844,884 + Psyr_0740 0.89 +0.3 844,885 - Psyr_0740 0.89 -0.6 844,885 - Psyr_0740 0.89 -1.7 844,885 - Psyr_0740 0.89 -0.1 844,885 - Psyr_0740 0.89 -1.2 844,885 - Psyr_0740 0.89 +0.1 844,885 - Psyr_0740 0.89 -0.4 844,885 - Psyr_0740 0.89 -0.8 844,902 - +0.5 844,948 + -3.1 844,948 + -0.4 844,948 + +0.5 844,948 + -1.8 844,949 - -0.2 844,949 - +1.4 844,949 - -1.5 844,952 + +0.1 844,952 + -1.2 844,953 - -0.9 844,953 - -1.4 844,953 - -2.8 844,953 - -0.1 844,960 + -3.4 844,961 - -0.4 844,998 + -0.7 844,998 + +1.2 844,998 + -0.9 844,998 + +0.3 844,999 - -0.1 844,999 - +0.1 844,999 - -0.7 844,999 - -0.4 845,151 + Psyr_0741 0.22 -1.1 845,151 + Psyr_0741 0.22 +0.1 845,183 + Psyr_0741 0.28 -0.4 845,183 + Psyr_0741 0.28 +0.2 845,183 + Psyr_0741 0.28 -2.8 845,183 + Psyr_0741 0.28 -0.2 845,183 + Psyr_0741 0.28 -0.1 845,238 + Psyr_0741 0.36 -1.4 845,303 + Psyr_0741 0.46 +0.1 845,303 + Psyr_0741 0.46 +1.9 845,304 - Psyr_0741 0.47 +0.3 845,311 + Psyr_0741 0.48 -1.8 845,312 - Psyr_0741 0.48 +0.3 845,312 - Psyr_0741 0.48 -0.2 845,312 - Psyr_0741 0.48 +0.3 845,352 + Psyr_0741 0.54 +0.6 845,352 + Psyr_0741 0.54 -1.4 845,352 + Psyr_0741 0.54 +2.4 845,353 - Psyr_0741 0.54 +0.6 845,435 + Psyr_0741 0.67 -1.9 845,435 + Psyr_0741 0.67 +0.6 845,435 + Psyr_0741 0.67 +1.4 845,435 + Psyr_0741 0.67 +0.2 845,435 + Psyr_0741 0.67 +1.6 845,495 - Psyr_0741 0.77 +1.6 845,495 - Psyr_0741 0.77 +0.6 845,651 - -1.1 845,651 - +0.3 845,685 + +0.3 845,686 - -0.4 845,697 + -0.7 845,697 + -0.3 845,697 + -2.2 845,698 - -0.9 845,698 - -0.9 845,698 - -0.8 845,698 - -1.4 845,698 - +0.2 845,698 - +0.4 845,698 - -0.7 845,698 - +0.6 845,701 + -0.6 845,701 + -1.2 845,701 + -0.5 845,727 + +1.9 845,821 + Psyr_0742 0.15 -0.2 845,845 + Psyr_0742 0.18 -0.4 845,845 + Psyr_0742 0.18 +0.1 845,845 + Psyr_0742 0.18 -2.2 845,846 - Psyr_0742 0.18 -1.4
Or see this region's nucleotide sequence