Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0531 and Psyr_0532 are separated by 30 nucleotides Psyr_0532 and Psyr_0533 are separated by 31 nucleotides Psyr_0533 and Psyr_0534 overlap by 11 nucleotides
Psyr_0531: Psyr_0531 - LmbE-like protein, at 599,742 to 601,151
_0531
Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138
_0532
Psyr_0533: Psyr_0533 - conserved hypothetical protein, at 602,170 to 602,943
_0533
Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102
_0534
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 600.824 kb on - strand, within Psyr_0531 at 600.834 kb on + strand, within Psyr_0531 at 601.166 kb on + strand at 601.167 kb on - strand at 601.192 kb on + strand at 601.192 kb on + strand at 601.193 kb on - strand at 601.193 kb on - strand at 601.237 kb on - strand at 601.441 kb on - strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.588 kb on - strand, within Psyr_0532 at 601.669 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 602.000 kb on + strand, within Psyr_0532 at 602.030 kb on + strand, within Psyr_0532 at 602.144 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.177 kb on + strand at 602.177 kb on + strand at 602.199 kb on + strand at 602.416 kb on + strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.750 kb on + strand, within Psyr_0533 at 602.751 kb on - strand, within Psyr_0533 at 602.910 kb on - strand at 602.910 kb on - strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.913 kb on - strand at 602.913 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 602.932 kb on - strand at 602.949 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 603.056 kb on + strand, within Psyr_0534 at 603.056 kb on + strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 600,824 - Psyr_0531 0.77 +2.8 600,834 + Psyr_0531 0.77 +1.6 601,166 + -0.8 601,167 - +1.4 601,192 + +4.3 601,192 + +1.9 601,193 - +2.4 601,193 - +2.2 601,237 - +3.3 601,441 - Psyr_0532 0.27 +5.0 601,449 + Psyr_0532 0.28 +4.0 601,449 + Psyr_0532 0.28 +3.2 601,449 + Psyr_0532 0.28 +3.3 601,450 - Psyr_0532 0.28 +3.5 601,450 - Psyr_0532 0.28 +3.8 601,450 - Psyr_0532 0.28 +3.0 601,450 - Psyr_0532 0.28 +4.6 601,465 - Psyr_0532 0.30 +3.8 601,465 - Psyr_0532 0.30 +4.1 601,465 - Psyr_0532 0.30 +2.8 601,588 - Psyr_0532 0.42 +3.2 601,669 - Psyr_0532 0.51 +3.7 601,750 - Psyr_0532 0.59 +3.5 601,750 - Psyr_0532 0.59 +2.2 601,809 + Psyr_0532 0.66 +3.7 601,809 + Psyr_0532 0.66 +2.7 601,809 + Psyr_0532 0.66 +4.9 601,809 + Psyr_0532 0.66 +4.3 601,810 - Psyr_0532 0.66 +3.5 601,810 - Psyr_0532 0.66 +7.0 601,810 - Psyr_0532 0.66 +4.0 602,000 + Psyr_0532 0.85 +3.4 602,030 + Psyr_0532 0.89 +3.6 602,144 + -2.7 602,151 - +1.0 602,151 - +0.7 602,151 - +1.9 602,177 + +1.3 602,177 + +2.2 602,199 + +1.6 602,416 + Psyr_0533 0.32 +1.6 602,417 - Psyr_0533 0.32 +2.4 602,417 - Psyr_0533 0.32 +2.8 602,548 + Psyr_0533 0.49 +2.6 602,548 + Psyr_0533 0.49 +0.6 602,548 + Psyr_0533 0.49 +1.6 602,548 + Psyr_0533 0.49 +2.0 602,549 - Psyr_0533 0.49 +4.5 602,549 - Psyr_0533 0.49 +2.5 602,579 - Psyr_0533 0.53 +2.5 602,579 - Psyr_0533 0.53 +3.0 602,696 - Psyr_0533 0.68 +2.3 602,696 - Psyr_0533 0.68 +2.8 602,750 + Psyr_0533 0.75 +1.7 602,751 - Psyr_0533 0.75 +2.9 602,910 - +2.7 602,910 - +4.3 602,912 + +1.4 602,912 + +3.7 602,912 + +1.7 602,912 + +2.0 602,913 - +1.2 602,913 - +3.0 602,929 - +1.2 602,929 - +2.5 602,929 - +3.4 602,931 + +2.2 602,931 + +2.7 602,931 + +2.7 602,932 - +1.9 602,932 - +0.5 602,949 + +1.2 602,970 + +0.6 602,970 + +2.3 602,970 + +2.9 602,970 + +1.9 602,970 + +2.6 602,970 + +3.6 602,971 - +2.5 602,971 - +2.0 602,971 - +3.6 602,971 - +1.7 602,971 - +3.0 602,971 - +2.6 602,971 - +3.5 602,971 - +2.6 602,971 - +2.2 602,971 - +3.7 602,971 - +0.7 602,978 + +0.2 602,978 + +2.7 602,978 + +1.8 602,978 + +1.8 602,978 + +0.9 602,978 + +0.9 602,978 + -0.0 602,979 - +3.1 602,979 - +2.0 602,979 - +2.2 602,979 - +2.5 602,979 - +3.7 602,979 - +2.1 603,056 + Psyr_0534 0.11 +3.1 603,056 + Psyr_0534 0.11 +2.8 603,057 - Psyr_0534 0.11 +2.1 603,057 - Psyr_0534 0.11 +3.8 603,057 - Psyr_0534 0.11 +3.0 603,057 - Psyr_0534 0.11 +1.7
Or see this region's nucleotide sequence