Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0463 and Psyr_0464 are separated by 134 nucleotides Psyr_0464 and Psyr_0465 overlap by 1 nucleotides Psyr_0465 and Psyr_0466 are separated by 10 nucleotides
Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757
_0463
Psyr_0464: Psyr_0464 - hypothetical protein, at 502,892 to 503,530
_0464
Psyr_0465: Psyr_0465 - HopAN1 protein, at 503,530 to 504,819
_0465
Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735
_0466
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.687 kb on + strand at 502.688 kb on - strand at 502.842 kb on - strand at 502.842 kb on - strand at 503.010 kb on + strand, within Psyr_0464 at 503.010 kb on + strand, within Psyr_0464 at 503.149 kb on + strand, within Psyr_0464 at 503.461 kb on + strand, within Psyr_0464 at 503.475 kb on + strand at 503.476 kb on - strand at 503.476 kb on - strand at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.873 kb on - strand, within Psyr_0465 at 504.176 kb on + strand, within Psyr_0465 at 504.176 kb on + strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.284 kb on + strand, within Psyr_0465 at 504.284 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.549 kb on - strand, within Psyr_0465 at 504.549 kb on - strand, within Psyr_0465 at 504.559 kb on + strand, within Psyr_0465 at 504.559 kb on + strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 505.044 kb on + strand, within Psyr_0466 at 505.119 kb on + strand, within Psyr_0466 at 505.119 kb on + strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.187 kb on + strand, within Psyr_0466 at 505.187 kb on + strand, within Psyr_0466 at 505.188 kb on - strand, within Psyr_0466 at 505.188 kb on - strand, within Psyr_0466 at 505.254 kb on + strand, within Psyr_0466 at 505.383 kb on + strand, within Psyr_0466 at 505.384 kb on - strand, within Psyr_0466 at 505.536 kb on - strand, within Psyr_0466 at 505.740 kb on + strand at 505.788 kb on + strand at 505.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 502,687 + +0.6 502,688 - -1.1 502,842 - -0.0 502,842 - -0.4 503,010 + Psyr_0464 0.18 -0.9 503,010 + Psyr_0464 0.18 -2.0 503,149 + Psyr_0464 0.40 -1.2 503,461 + Psyr_0464 0.89 +0.3 503,475 + -1.0 503,476 - -1.7 503,476 - -2.2 503,865 - Psyr_0465 0.26 -0.2 503,865 - Psyr_0465 0.26 +0.2 503,865 - Psyr_0465 0.26 -1.2 503,865 - Psyr_0465 0.26 +0.1 503,873 - Psyr_0465 0.27 +0.4 504,176 + Psyr_0465 0.50 -0.2 504,176 + Psyr_0465 0.50 +0.2 504,177 - Psyr_0465 0.50 -1.7 504,177 - Psyr_0465 0.50 -1.7 504,177 - Psyr_0465 0.50 -0.2 504,177 - Psyr_0465 0.50 -1.7 504,284 + Psyr_0465 0.58 -0.3 504,284 + Psyr_0465 0.58 -0.2 504,548 + Psyr_0465 0.79 +0.2 504,548 + Psyr_0465 0.79 -0.2 504,548 + Psyr_0465 0.79 -0.3 504,548 + Psyr_0465 0.79 -2.1 504,548 + Psyr_0465 0.79 -0.5 504,548 + Psyr_0465 0.79 -0.9 504,549 - Psyr_0465 0.79 -0.1 504,549 - Psyr_0465 0.79 -0.4 504,559 + Psyr_0465 0.80 -1.3 504,559 + Psyr_0465 0.80 -1.4 504,560 - Psyr_0465 0.80 +1.9 504,560 - Psyr_0465 0.80 -3.1 504,560 - Psyr_0465 0.80 -0.4 505,044 + Psyr_0466 0.24 -0.5 505,119 + Psyr_0466 0.32 -0.5 505,119 + Psyr_0466 0.32 -1.3 505,120 - Psyr_0466 0.32 +0.8 505,120 - Psyr_0466 0.32 -0.2 505,120 - Psyr_0466 0.32 -0.7 505,120 - Psyr_0466 0.32 -2.2 505,187 + Psyr_0466 0.39 -1.0 505,187 + Psyr_0466 0.39 +2.3 505,188 - Psyr_0466 0.40 +0.6 505,188 - Psyr_0466 0.40 -2.0 505,254 + Psyr_0466 0.47 -0.0 505,383 + Psyr_0466 0.61 -0.4 505,384 - Psyr_0466 0.61 +0.6 505,536 - Psyr_0466 0.78 +1.0 505,740 + -0.5 505,788 + -0.1 505,789 - -0.5
Or see this region's nucleotide sequence