Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0399 and Psyr_0400 are separated by 13 nucleotides Psyr_0400 and Psyr_0401 are separated by 181 nucleotides Psyr_0401 and Psyr_0402 are separated by 584 nucleotides
Psyr_0399: Psyr_0399 - LSU ribosomal protein L31P, at 427,900 to 428,121
_0399
Psyr_0400: Psyr_0400 - nuclease (SNase-like), at 428,135 to 428,938
_0400
Psyr_0401: Psyr_0401 - Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+), at 429,120 to 430,388
_0401
Psyr_0402: Psyr_0402 - Peptidoglycan glycosyltransferase, at 430,973 to 433,417
_0402
Position (kb) 429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 428.120 kb on - strand at 428.120 kb on - strand at 428.120 kb on - strand at 428.283 kb on + strand, within Psyr_0400 at 428.326 kb on + strand, within Psyr_0400 at 428.327 kb on - strand, within Psyr_0400 at 428.459 kb on + strand, within Psyr_0400 at 428.483 kb on + strand, within Psyr_0400 at 428.483 kb on + strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.537 kb on + strand, within Psyr_0400 at 428.537 kb on + strand, within Psyr_0400 at 428.936 kb on + strand at 428.987 kb on + strand at 428.999 kb on - strand at 428.999 kb on - strand at 429.003 kb on + strand at 429.003 kb on + strand at 429.003 kb on + strand at 429.004 kb on - strand at 429.004 kb on - strand at 429.010 kb on + strand at 429.010 kb on + strand at 429.010 kb on + strand at 429.011 kb on - strand at 429.022 kb on + strand at 429.023 kb on - strand at 429.051 kb on + strand at 429.051 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.070 kb on + strand at 429.098 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.151 kb on - strand at 429.151 kb on - strand at 429.231 kb on + strand at 429.232 kb on - strand at 429.232 kb on - strand at 429.288 kb on + strand, within Psyr_0401 at 429.288 kb on + strand, within Psyr_0401 at 429.288 kb on + strand, within Psyr_0401 at 429.288 kb on + strand, within Psyr_0401 at 429.289 kb on - strand, within Psyr_0401 at 429.289 kb on - strand, within Psyr_0401 at 429.289 kb on - strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.316 kb on + strand, within Psyr_0401 at 429.323 kb on + strand, within Psyr_0401 at 429.323 kb on + strand, within Psyr_0401 at 429.323 kb on + strand, within Psyr_0401 at 429.324 kb on - strand, within Psyr_0401 at 429.324 kb on - strand, within Psyr_0401 at 429.324 kb on - strand, within Psyr_0401 at 429.395 kb on + strand, within Psyr_0401 at 429.395 kb on + strand, within Psyr_0401 at 429.395 kb on + strand, within Psyr_0401 at 429.491 kb on + strand, within Psyr_0401 at 429.780 kb on - strand, within Psyr_0401 at 429.820 kb on - strand, within Psyr_0401 at 429.820 kb on - strand, within Psyr_0401 at 429.886 kb on + strand, within Psyr_0401 at 429.886 kb on + strand, within Psyr_0401 at 429.887 kb on - strand, within Psyr_0401 at 429.887 kb on - strand, within Psyr_0401 at 429.887 kb on - strand, within Psyr_0401 at 430.051 kb on - strand, within Psyr_0401 at 430.210 kb on - strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.547 kb on - strand at 430.547 kb on - strand at 430.578 kb on - strand at 430.578 kb on - strand at 430.579 kb on + strand at 430.579 kb on + strand at 430.579 kb on + strand at 430.579 kb on + strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.795 kb on + strand at 430.797 kb on + strand at 430.797 kb on + strand at 430.797 kb on + strand at 430.797 kb on + strand at 430.798 kb on - strand at 430.798 kb on - strand at 430.854 kb on + strand at 430.854 kb on + strand at 430.854 kb on + strand at 430.854 kb on + strand at 430.855 kb on - strand at 430.855 kb on - strand at 430.855 kb on - strand at 430.971 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.301 kb on + strand, within Psyr_0402 at 431.301 kb on + strand, within Psyr_0402 at 431.301 kb on + strand, within Psyr_0402 at 431.301 kb on + strand, within Psyr_0402 at 431.313 kb on + strand, within Psyr_0402 at 431.314 kb on - strand, within Psyr_0402
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 428,120 - -1.9 428,120 - -0.7 428,120 - +1.6 428,283 + Psyr_0400 0.18 -1.2 428,326 + Psyr_0400 0.24 -0.4 428,327 - Psyr_0400 0.24 -0.4 428,459 + Psyr_0400 0.40 -0.6 428,483 + Psyr_0400 0.43 +0.1 428,483 + Psyr_0400 0.43 +0.7 428,484 - Psyr_0400 0.43 -0.5 428,484 - Psyr_0400 0.43 -0.8 428,484 - Psyr_0400 0.43 +0.4 428,537 + Psyr_0400 0.50 -0.8 428,537 + Psyr_0400 0.50 -0.8 428,936 + -0.2 428,987 + -0.0 428,999 - +0.2 428,999 - -1.0 429,003 + -1.0 429,003 + +0.9 429,003 + +1.3 429,004 - -1.6 429,004 - +0.9 429,010 + -0.8 429,010 + -1.6 429,010 + +1.2 429,011 - +0.0 429,022 + +0.2 429,023 - -0.6 429,051 + -0.9 429,051 + -0.1 429,057 + -0.6 429,057 + +1.5 429,057 + +0.9 429,057 + +0.4 429,057 + -0.2 429,058 - +1.6 429,058 - -0.6 429,058 - -1.3 429,058 - +0.2 429,070 + +1.0 429,098 + -0.1 429,117 + -0.7 429,117 + +0.6 429,117 + -1.7 429,117 + -0.4 429,118 - -1.7 429,118 - +0.5 429,118 - +0.5 429,118 - +1.2 429,118 - +2.4 429,118 - -0.4 429,118 - -0.6 429,118 - -0.6 429,118 - +0.6 429,118 - -0.3 429,151 - -0.1 429,151 - +0.5 429,231 + -1.4 429,232 - +0.1 429,232 - -0.2 429,288 + Psyr_0401 0.13 -0.2 429,288 + Psyr_0401 0.13 -2.2 429,288 + Psyr_0401 0.13 +0.8 429,288 + Psyr_0401 0.13 +0.6 429,289 - Psyr_0401 0.13 -0.7 429,289 - Psyr_0401 0.13 +0.2 429,289 - Psyr_0401 0.13 -1.4 429,294 + Psyr_0401 0.14 -1.4 429,294 + Psyr_0401 0.14 -0.1 429,294 + Psyr_0401 0.14 +0.3 429,294 + Psyr_0401 0.14 -0.2 429,294 + Psyr_0401 0.14 +0.6 429,295 - Psyr_0401 0.14 +0.7 429,295 - Psyr_0401 0.14 +0.3 429,295 - Psyr_0401 0.14 -1.6 429,295 - Psyr_0401 0.14 +0.5 429,295 - Psyr_0401 0.14 +0.9 429,295 - Psyr_0401 0.14 +1.3 429,295 - Psyr_0401 0.14 -0.8 429,295 - Psyr_0401 0.14 +0.1 429,316 + Psyr_0401 0.15 -0.5 429,323 + Psyr_0401 0.16 +0.2 429,323 + Psyr_0401 0.16 -0.0 429,323 + Psyr_0401 0.16 -0.4 429,324 - Psyr_0401 0.16 +0.7 429,324 - Psyr_0401 0.16 -0.7 429,324 - Psyr_0401 0.16 -0.1 429,395 + Psyr_0401 0.22 -0.1 429,395 + Psyr_0401 0.22 +0.2 429,395 + Psyr_0401 0.22 +0.5 429,491 + Psyr_0401 0.29 -0.0 429,780 - Psyr_0401 0.52 -0.0 429,820 - Psyr_0401 0.55 -0.7 429,820 - Psyr_0401 0.55 +0.6 429,886 + Psyr_0401 0.60 -0.3 429,886 + Psyr_0401 0.60 +0.7 429,887 - Psyr_0401 0.60 -0.5 429,887 - Psyr_0401 0.60 -0.3 429,887 - Psyr_0401 0.60 -0.1 430,051 - Psyr_0401 0.73 +0.5 430,210 - Psyr_0401 0.86 +0.7 430,242 + Psyr_0401 0.88 -1.6 430,242 + Psyr_0401 0.88 +0.3 430,242 + Psyr_0401 0.88 -0.2 430,242 + Psyr_0401 0.88 -0.3 430,242 + Psyr_0401 0.88 -0.2 430,242 + Psyr_0401 0.88 -0.0 430,242 + Psyr_0401 0.88 +0.2 430,242 + Psyr_0401 0.88 +1.8 430,242 + Psyr_0401 0.88 +0.7 430,242 + Psyr_0401 0.88 -0.7 430,243 - Psyr_0401 0.88 -0.3 430,243 - Psyr_0401 0.88 -1.4 430,243 - Psyr_0401 0.88 -1.4 430,243 - Psyr_0401 0.88 -2.6 430,243 - Psyr_0401 0.88 +0.2 430,243 - Psyr_0401 0.88 +1.6 430,243 - Psyr_0401 0.88 +0.3 430,547 - -0.9 430,547 - -0.4 430,578 - -0.4 430,578 - +1.6 430,579 + +2.2 430,579 + +0.6 430,579 + -2.0 430,579 + -0.5 430,580 - +0.8 430,580 - +0.6 430,580 - -0.5 430,580 - -1.7 430,580 - +0.4 430,580 - +0.5 430,580 - +1.2 430,580 - -0.2 430,795 + +0.4 430,797 + +0.8 430,797 + -1.4 430,797 + -0.8 430,797 + +0.1 430,798 - -0.6 430,798 - -0.9 430,854 + -0.6 430,854 + -0.9 430,854 + -1.7 430,854 + +0.8 430,855 - -1.0 430,855 - -0.0 430,855 - -0.3 430,971 + -0.7 431,208 + -0.6 431,208 + -0.9 431,208 + -2.6 431,208 + -2.9 431,208 + -0.9 431,208 + -2.0 431,209 - -2.0 431,209 - -0.9 431,209 - -2.9 431,209 - -3.0 431,209 - -1.6 431,209 - -1.5 431,209 - +0.4 431,209 - -1.9 431,301 + Psyr_0402 0.13 -0.4 431,301 + Psyr_0402 0.13 -0.5 431,301 + Psyr_0402 0.13 -1.2 431,301 + Psyr_0402 0.13 -1.6 431,313 + Psyr_0402 0.14 -1.0 431,314 - Psyr_0402 0.14 -2.4
Or see this region's nucleotide sequence