Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0319

Experiment: KB with Nalidixic 12.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0317 and Psyr_0318 are separated by 303 nucleotidesPsyr_0318 and Psyr_0319 overlap by 4 nucleotidesPsyr_0319 and Psyr_0320 are separated by 150 nucleotidesPsyr_0320 and Psyr_0321 are separated by 75 nucleotides Psyr_0317: Psyr_0317 - 5-formyltetrahydrofolate cyclo-ligase, at 335,260 to 335,871 _0317 Psyr_0318: Psyr_0318 - cell division protein ZapA, at 336,175 to 336,504 _0318 Psyr_0319: Psyr_0319 - conserved hypothetical protein, at 336,501 to 336,710 _0319 Psyr_0320: Psyr_0320 - Protein of unknown function UPF0149, at 336,861 to 337,430 _0320 Psyr_0321: Psyr_0321 - aminopeptidase P, Metallo peptidase, MEROPS family M24B, at 337,506 to 338,840 _0321 Position (kb) 336 337Strain fitness (log2 ratio) -2 -1 0 1 2 3at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.639 kb on + strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.640 kb on - strand, within Psyr_0317at 335.765 kb on + strand, within Psyr_0317at 335.766 kb on - strand, within Psyr_0317at 335.766 kb on - strand, within Psyr_0317at 335.770 kb on - strand, within Psyr_0317at 335.824 kb on + strandat 335.825 kb on - strandat 335.825 kb on - strandat 335.825 kb on - strandat 335.993 kb on + strandat 336.039 kb on - strandat 336.154 kb on + strandat 336.154 kb on + strandat 336.154 kb on + strandat 336.154 kb on + strandat 336.155 kb on - strandat 336.155 kb on - strandat 336.280 kb on + strand, within Psyr_0318at 336.280 kb on + strand, within Psyr_0318at 336.280 kb on + strand, within Psyr_0318at 336.280 kb on + strand, within Psyr_0318at 336.280 kb on + strand, within Psyr_0318at 336.280 kb on + strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.281 kb on - strand, within Psyr_0318at 336.458 kb on + strand, within Psyr_0318at 336.458 kb on + strand, within Psyr_0318at 336.458 kb on + strand, within Psyr_0318at 336.459 kb on - strand, within Psyr_0318at 336.618 kb on + strand, within Psyr_0319at 336.618 kb on + strand, within Psyr_0319at 336.618 kb on + strand, within Psyr_0319at 336.618 kb on + strand, within Psyr_0319at 336.619 kb on - strand, within Psyr_0319at 336.619 kb on - strand, within Psyr_0319at 336.619 kb on - strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.621 kb on + strand, within Psyr_0319at 336.622 kb on - strand, within Psyr_0319at 336.641 kb on + strand, within Psyr_0319at 336.655 kb on + strand, within Psyr_0319at 336.655 kb on + strand, within Psyr_0319at 336.655 kb on + strand, within Psyr_0319at 336.656 kb on - strand, within Psyr_0319at 336.656 kb on - strand, within Psyr_0319at 336.656 kb on - strand, within Psyr_0319at 336.656 kb on - strand, within Psyr_0319at 336.725 kb on + strandat 336.725 kb on + strandat 336.725 kb on + strandat 336.725 kb on + strandat 336.808 kb on + strandat 336.813 kb on + strandat 336.813 kb on + strandat 336.813 kb on + strandat 336.813 kb on + strandat 336.829 kb on + strandat 336.829 kb on + strandat 336.829 kb on + strandat 336.853 kb on - strandat 336.856 kb on + strandat 336.882 kb on + strandat 336.920 kb on + strand, within Psyr_0320at 336.925 kb on + strand, within Psyr_0320at 337.332 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.350 kb on + strand, within Psyr_0320at 337.351 kb on - strand, within Psyr_0320at 337.351 kb on - strand, within Psyr_0320at 337.530 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
remove
335,639 + Psyr_0317 0.62 -1.6
335,639 + Psyr_0317 0.62 -0.3
335,639 + Psyr_0317 0.62 -1.0
335,639 + Psyr_0317 0.62 +0.2
335,639 + Psyr_0317 0.62 -1.4
335,639 + Psyr_0317 0.62 -0.7
335,639 + Psyr_0317 0.62 -0.0
335,640 - Psyr_0317 0.62 +0.6
335,640 - Psyr_0317 0.62 -0.5
335,640 - Psyr_0317 0.62 -0.7
335,640 - Psyr_0317 0.62 -1.9
335,640 - Psyr_0317 0.62 -0.7
335,765 + Psyr_0317 0.83 -1.7
335,766 - Psyr_0317 0.83 -0.6
335,766 - Psyr_0317 0.83 +0.3
335,770 - Psyr_0317 0.83 +0.1
335,824 + -0.3
335,825 - +1.0
335,825 - -0.7
335,825 - -0.1
335,993 + +0.6
336,039 - -0.2
336,154 + -0.8
336,154 + +0.4
336,154 + -0.7
336,154 + +0.0
336,155 - -0.2
336,155 - -0.8
336,280 + Psyr_0318 0.32 +1.3
336,280 + Psyr_0318 0.32 -1.2
336,280 + Psyr_0318 0.32 +0.0
336,280 + Psyr_0318 0.32 +0.3
336,280 + Psyr_0318 0.32 +1.1
336,280 + Psyr_0318 0.32 +0.2
336,281 - Psyr_0318 0.32 -1.1
336,281 - Psyr_0318 0.32 +1.0
336,281 - Psyr_0318 0.32 +1.6
336,281 - Psyr_0318 0.32 +1.5
336,281 - Psyr_0318 0.32 +0.2
336,281 - Psyr_0318 0.32 +1.0
336,458 + Psyr_0318 0.86 -2.1
336,458 + Psyr_0318 0.86 +1.0
336,458 + Psyr_0318 0.86 +0.6
336,459 - Psyr_0318 0.86 +0.9
336,618 + Psyr_0319 0.56 -0.1
336,618 + Psyr_0319 0.56 +0.7
336,618 + Psyr_0319 0.56 +0.7
336,618 + Psyr_0319 0.56 +1.1
336,619 - Psyr_0319 0.56 -0.4
336,619 - Psyr_0319 0.56 +0.2
336,619 - Psyr_0319 0.56 +0.3
336,621 + Psyr_0319 0.57 +0.0
336,621 + Psyr_0319 0.57 +1.3
336,621 + Psyr_0319 0.57 -0.4
336,621 + Psyr_0319 0.57 -1.7
336,621 + Psyr_0319 0.57 +3.4
336,621 + Psyr_0319 0.57 +0.4
336,621 + Psyr_0319 0.57 +0.8
336,621 + Psyr_0319 0.57 +1.5
336,621 + Psyr_0319 0.57 +1.8
336,621 + Psyr_0319 0.57 +0.0
336,621 + Psyr_0319 0.57 +1.2
336,622 - Psyr_0319 0.58 -1.0
336,641 + Psyr_0319 0.67 +1.0
336,655 + Psyr_0319 0.73 +0.7
336,655 + Psyr_0319 0.73 +0.2
336,655 + Psyr_0319 0.73 +0.4
336,656 - Psyr_0319 0.74 +0.4
336,656 - Psyr_0319 0.74 -0.9
336,656 - Psyr_0319 0.74 +0.1
336,656 - Psyr_0319 0.74 +0.2
336,725 + +1.4
336,725 + +0.9
336,725 + +0.8
336,725 + +0.9
336,808 + +0.1
336,813 + -0.3
336,813 + -1.7
336,813 + -0.1
336,813 + +1.5
336,829 + -0.5
336,829 + -0.4
336,829 + +1.9
336,853 - -2.4
336,856 + +3.6
336,882 + +1.4
336,920 + Psyr_0320 0.10 +1.2
336,925 + Psyr_0320 0.11 +0.9
337,332 + Psyr_0320 0.83 +1.4
337,350 + Psyr_0320 0.86 +0.6
337,350 + Psyr_0320 0.86 +1.2
337,350 + Psyr_0320 0.86 +3.4
337,350 + Psyr_0320 0.86 +0.5
337,350 + Psyr_0320 0.86 +1.6
337,350 + Psyr_0320 0.86 +0.7
337,350 + Psyr_0320 0.86 -0.2
337,350 + Psyr_0320 0.86 +1.1
337,350 + Psyr_0320 0.86 +0.3
337,350 + Psyr_0320 0.86 -0.6
337,350 + Psyr_0320 0.86 +2.6
337,350 + Psyr_0320 0.86 +0.1
337,351 - Psyr_0320 0.86 -0.4
337,351 - Psyr_0320 0.86 +0.0
337,530 + +0.0

Or see this region's nucleotide sequence