Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0240

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0238 and Psyr_0239 are separated by 25 nucleotidesPsyr_0239 and Psyr_0240 overlap by 4 nucleotidesPsyr_0240 and Psyr_0241 are separated by 49 nucleotides Psyr_0238: Psyr_0238 - Helix-turn-helix motif protein, at 251,961 to 252,560 _0238 Psyr_0239: Psyr_0239 - cytochrome c5, at 252,586 to 252,909 _0239 Psyr_0240: Psyr_0240 - hypothetical protein, at 252,906 to 253,160 _0240 Psyr_0241: Psyr_0241 - conserved hypothetical protein, at 253,210 to 255,141 _0241 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 251.940 kb on + strandat 251.940 kb on + strandat 251.941 kb on - strandat 251.941 kb on - strandat 251.981 kb on + strandat 251.981 kb on + strandat 252.006 kb on - strandat 252.238 kb on - strand, within Psyr_0238at 252.238 kb on - strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.262 kb on + strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.340 kb on - strand, within Psyr_0238at 252.340 kb on - strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.472 kb on - strand, within Psyr_0238at 252.472 kb on - strand, within Psyr_0238at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.959 kb on + strand, within Psyr_0240at 252.960 kb on - strand, within Psyr_0240at 253.008 kb on - strand, within Psyr_0240at 253.031 kb on + strand, within Psyr_0240at 253.031 kb on + strand, within Psyr_0240at 253.032 kb on - strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.119 kb on + strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.120 kb on - strand, within Psyr_0240at 253.122 kb on - strand, within Psyr_0240at 253.122 kb on - strand, within Psyr_0240at 253.127 kb on + strand, within Psyr_0240at 253.189 kb on + strandat 253.262 kb on + strandat 253.272 kb on + strandat 253.272 kb on + strandat 253.273 kb on - strandat 253.273 kb on - strandat 253.330 kb on + strandat 253.330 kb on + strandat 253.330 kb on + strandat 253.331 kb on - strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.372 kb on + strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.373 kb on - strandat 253.582 kb on + strand, within Psyr_0241at 253.582 kb on + strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.583 kb on - strand, within Psyr_0241at 253.597 kb on + strand, within Psyr_0241at 253.597 kb on + strand, within Psyr_0241at 253.597 kb on + strand, within Psyr_0241at 253.598 kb on - strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.798 kb on + strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.799 kb on - strand, within Psyr_0241at 253.866 kb on + strand, within Psyr_0241at 253.867 kb on - strand, within Psyr_0241at 253.867 kb on - strand, within Psyr_0241at 253.867 kb on - strand, within Psyr_0241at 253.887 kb on + strand, within Psyr_0241at 253.888 kb on - strand, within Psyr_0241at 253.958 kb on + strand, within Psyr_0241at 253.959 kb on - strand, within Psyr_0241at 254.064 kb on + strand, within Psyr_0241at 254.064 kb on + strand, within Psyr_0241at 254.064 kb on + strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.065 kb on - strand, within Psyr_0241at 254.081 kb on + strand, within Psyr_0241at 254.123 kb on - strand, within Psyr_0241

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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251,940 + -0.4
251,940 + -0.7
251,941 - +0.2
251,941 - +0.0
251,981 + +1.4
251,981 + -0.4
252,006 - -0.3
252,238 - Psyr_0238 0.46 +0.6
252,238 - Psyr_0238 0.46 -0.4
252,260 + Psyr_0238 0.50 +0.3
252,260 + Psyr_0238 0.50 +0.1
252,260 + Psyr_0238 0.50 +0.0
252,261 - Psyr_0238 0.50 +0.3
252,261 - Psyr_0238 0.50 -0.7
252,261 - Psyr_0238 0.50 -0.0
252,261 - Psyr_0238 0.50 +0.1
252,261 - Psyr_0238 0.50 -0.6
252,261 - Psyr_0238 0.50 -0.3
252,262 + Psyr_0238 0.50 +2.2
252,263 - Psyr_0238 0.50 +0.6
252,263 - Psyr_0238 0.50 -0.4
252,263 - Psyr_0238 0.50 +0.4
252,263 - Psyr_0238 0.50 -0.4
252,340 - Psyr_0238 0.63 -0.8
252,340 - Psyr_0238 0.63 +0.6
252,444 + Psyr_0238 0.81 +0.4
252,444 + Psyr_0238 0.81 +1.2
252,444 + Psyr_0238 0.81 -1.3
252,444 + Psyr_0238 0.81 -2.0
252,444 + Psyr_0238 0.81 +0.5
252,444 + Psyr_0238 0.81 +0.1
252,444 + Psyr_0238 0.81 +1.4
252,444 + Psyr_0238 0.81 -0.7
252,444 + Psyr_0238 0.81 -0.0
252,444 + Psyr_0238 0.81 -0.0
252,444 + Psyr_0238 0.81 +1.3
252,444 + Psyr_0238 0.81 -0.8
252,444 + Psyr_0238 0.81 +1.2
252,444 + Psyr_0238 0.81 -0.3
252,444 + Psyr_0238 0.81 +0.6
252,444 + Psyr_0238 0.81 +0.6
252,444 + Psyr_0238 0.81 +0.6
252,444 + Psyr_0238 0.81 +0.4
252,444 + Psyr_0238 0.81 -0.5
252,445 - Psyr_0238 0.81 +1.5
252,445 - Psyr_0238 0.81 +1.3
252,445 - Psyr_0238 0.81 +0.4
252,445 - Psyr_0238 0.81 -0.3
252,445 - Psyr_0238 0.81 -0.4
252,445 - Psyr_0238 0.81 -0.3
252,445 - Psyr_0238 0.81 -0.4
252,445 - Psyr_0238 0.81 +1.6
252,468 + Psyr_0238 0.84 -1.4
252,468 + Psyr_0238 0.84 +0.6
252,468 + Psyr_0238 0.84 -0.1
252,468 + Psyr_0238 0.84 +0.8
252,469 - Psyr_0238 0.85 -1.2
252,469 - Psyr_0238 0.85 +0.1
252,469 - Psyr_0238 0.85 -0.7
252,469 - Psyr_0238 0.85 -0.3
252,469 - Psyr_0238 0.85 -1.2
252,471 + Psyr_0238 0.85 -0.1
252,471 + Psyr_0238 0.85 +0.6
252,471 + Psyr_0238 0.85 +0.6
252,472 - Psyr_0238 0.85 +1.2
252,472 - Psyr_0238 0.85 +0.1
252,716 + Psyr_0239 0.40 -1.2
252,716 + Psyr_0239 0.40 -0.0
252,716 + Psyr_0239 0.40 -2.7
252,716 + Psyr_0239 0.40 -0.5
252,716 + Psyr_0239 0.40 -1.0
252,716 + Psyr_0239 0.40 -1.6
252,959 + Psyr_0240 0.21 -0.4
252,960 - Psyr_0240 0.21 +0.3
253,008 - Psyr_0240 0.40 -1.1
253,031 + Psyr_0240 0.49 -0.4
253,031 + Psyr_0240 0.49 +0.2
253,032 - Psyr_0240 0.49 -0.8
253,119 + Psyr_0240 0.84 -1.6
253,119 + Psyr_0240 0.84 -0.7
253,119 + Psyr_0240 0.84 -0.3
253,119 + Psyr_0240 0.84 -0.0
253,120 - Psyr_0240 0.84 -0.0
253,120 - Psyr_0240 0.84 +0.7
253,120 - Psyr_0240 0.84 -0.2
253,120 - Psyr_0240 0.84 -1.2
253,120 - Psyr_0240 0.84 +0.2
253,120 - Psyr_0240 0.84 -1.7
253,122 - Psyr_0240 0.85 -0.5
253,122 - Psyr_0240 0.85 -0.2
253,127 + Psyr_0240 0.87 -0.6
253,189 + -0.2
253,262 + -0.7
253,272 + +0.6
253,272 + -0.2
253,273 - -0.2
253,273 - +2.6
253,330 + -0.6
253,330 + -0.2
253,330 + +0.1
253,331 - +0.7
253,372 + -0.6
253,372 + +2.2
253,372 + +2.2
253,372 + +0.0
253,372 + +1.1
253,373 - -1.2
253,373 - -0.5
253,373 - +0.1
253,373 - +0.8
253,373 - -1.4
253,582 + Psyr_0241 0.19 +0.6
253,582 + Psyr_0241 0.19 +0.4
253,583 - Psyr_0241 0.19 -0.3
253,583 - Psyr_0241 0.19 -0.9
253,583 - Psyr_0241 0.19 -1.2
253,583 - Psyr_0241 0.19 -0.2
253,583 - Psyr_0241 0.19 +0.2
253,583 - Psyr_0241 0.19 +0.1
253,583 - Psyr_0241 0.19 -0.9
253,583 - Psyr_0241 0.19 -0.4
253,583 - Psyr_0241 0.19 +0.3
253,597 + Psyr_0241 0.20 -1.7
253,597 + Psyr_0241 0.20 -0.2
253,597 + Psyr_0241 0.20 +0.1
253,598 - Psyr_0241 0.20 -0.2
253,798 + Psyr_0241 0.30 +2.0
253,798 + Psyr_0241 0.30 -1.0
253,798 + Psyr_0241 0.30 -0.4
253,798 + Psyr_0241 0.30 -0.6
253,798 + Psyr_0241 0.30 -1.5
253,798 + Psyr_0241 0.30 +0.5
253,798 + Psyr_0241 0.30 -0.4
253,798 + Psyr_0241 0.30 +0.7
253,798 + Psyr_0241 0.30 -0.4
253,798 + Psyr_0241 0.30 -0.1
253,798 + Psyr_0241 0.30 -1.7
253,798 + Psyr_0241 0.30 -0.9
253,798 + Psyr_0241 0.30 -0.3
253,798 + Psyr_0241 0.30 -0.4
253,798 + Psyr_0241 0.30 +1.3
253,798 + Psyr_0241 0.30 -0.5
253,798 + Psyr_0241 0.30 -0.2
253,799 - Psyr_0241 0.30 -0.2
253,799 - Psyr_0241 0.30 -0.0
253,799 - Psyr_0241 0.30 +0.6
253,799 - Psyr_0241 0.30 -0.1
253,799 - Psyr_0241 0.30 -0.0
253,799 - Psyr_0241 0.30 +0.3
253,799 - Psyr_0241 0.30 +0.1
253,799 - Psyr_0241 0.30 +0.2
253,799 - Psyr_0241 0.30 +1.1
253,799 - Psyr_0241 0.30 -0.2
253,799 - Psyr_0241 0.30 -0.4
253,799 - Psyr_0241 0.30 -0.7
253,866 + Psyr_0241 0.34 +1.2
253,867 - Psyr_0241 0.34 +0.4
253,867 - Psyr_0241 0.34 -0.2
253,867 - Psyr_0241 0.34 -1.7
253,887 + Psyr_0241 0.35 +1.2
253,888 - Psyr_0241 0.35 -1.4
253,958 + Psyr_0241 0.39 -0.2
253,959 - Psyr_0241 0.39 +0.3
254,064 + Psyr_0241 0.44 -0.6
254,064 + Psyr_0241 0.44 -2.4
254,064 + Psyr_0241 0.44 -0.5
254,065 - Psyr_0241 0.44 -1.0
254,065 - Psyr_0241 0.44 +1.2
254,065 - Psyr_0241 0.44 -1.2
254,065 - Psyr_0241 0.44 -1.4
254,065 - Psyr_0241 0.44 +0.2
254,081 + Psyr_0241 0.45 +0.1
254,123 - Psyr_0241 0.47 +0.2

Or see this region's nucleotide sequence