Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0142 and Psyr_0143 are separated by 9 nucleotides Psyr_0143 and Psyr_0144 are separated by 483 nucleotides
Psyr_0142: Psyr_0142 - ABC transporter, at 153,433 to 155,016
_0142
Psyr_0143: Psyr_0143 - chemotaxis sensory transducer, at 155,026 to 156,546
_0143
Psyr_0144: Psyr_0144 - transcriptional regulator, AsnC family, at 157,030 to 157,518
_0144
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.171 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.972 kb on + strand at 154.972 kb on + strand at 154.973 kb on - strand at 155.028 kb on - strand at 155.028 kb on - strand at 155.227 kb on - strand, within Psyr_0143 at 155.414 kb on - strand, within Psyr_0143 at 155.710 kb on - strand, within Psyr_0143 at 155.855 kb on - strand, within Psyr_0143 at 156.035 kb on + strand, within Psyr_0143 at 156.036 kb on - strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.117 kb on - strand, within Psyr_0143 at 156.117 kb on - strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.251 kb on - strand, within Psyr_0143 at 156.307 kb on + strand, within Psyr_0143 at 156.308 kb on - strand, within Psyr_0143 at 156.308 kb on - strand, within Psyr_0143 at 156.308 kb on - strand, within Psyr_0143 at 156.440 kb on + strand at 156.440 kb on + strand at 156.618 kb on - strand at 156.618 kb on - strand at 156.624 kb on - strand at 156.624 kb on - strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.669 kb on + strand at 156.669 kb on + strand at 156.803 kb on + strand at 156.921 kb on + strand at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.191 kb on - strand, within Psyr_0144 at 157.338 kb on + strand, within Psyr_0144 at 157.338 kb on + strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.364 kb on + strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.471 kb on + strand at 157.472 kb on - strand at 157.479 kb on + strand at 157.480 kb on - strand at 157.482 kb on - strand at 157.486 kb on - strand at 157.519 kb on + strand at 157.519 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 154,171 + Psyr_0142 0.47 -0.3 154,846 + Psyr_0142 0.89 +0.6 154,846 + Psyr_0142 0.89 +0.8 154,846 + Psyr_0142 0.89 +0.3 154,846 + Psyr_0142 0.89 -0.5 154,846 + Psyr_0142 0.89 -1.3 154,846 + Psyr_0142 0.89 +0.0 154,847 - Psyr_0142 0.89 +0.4 154,847 - Psyr_0142 0.89 -1.3 154,847 - Psyr_0142 0.89 +0.6 154,847 - Psyr_0142 0.89 -0.7 154,972 + +1.0 154,972 + +0.2 154,973 - +0.2 155,028 - -0.4 155,028 - +0.4 155,227 - Psyr_0143 0.13 +0.6 155,414 - Psyr_0143 0.26 -1.1 155,710 - Psyr_0143 0.45 -0.1 155,855 - Psyr_0143 0.55 +0.0 156,035 + Psyr_0143 0.66 +1.1 156,036 - Psyr_0143 0.66 +0.2 156,065 + Psyr_0143 0.68 -2.1 156,065 + Psyr_0143 0.68 -0.8 156,065 + Psyr_0143 0.68 -1.6 156,065 + Psyr_0143 0.68 +1.1 156,065 + Psyr_0143 0.68 -0.0 156,065 + Psyr_0143 0.68 -0.4 156,065 + Psyr_0143 0.68 -0.5 156,065 + Psyr_0143 0.68 +0.3 156,065 + Psyr_0143 0.68 +0.8 156,065 + Psyr_0143 0.68 +0.4 156,065 + Psyr_0143 0.68 -0.6 156,065 + Psyr_0143 0.68 +0.6 156,065 + Psyr_0143 0.68 +0.1 156,065 + Psyr_0143 0.68 -0.3 156,065 + Psyr_0143 0.68 -0.3 156,065 + Psyr_0143 0.68 -1.1 156,066 - Psyr_0143 0.68 -0.9 156,066 - Psyr_0143 0.68 -0.3 156,066 - Psyr_0143 0.68 -0.1 156,066 - Psyr_0143 0.68 -0.1 156,066 - Psyr_0143 0.68 -0.2 156,066 - Psyr_0143 0.68 -1.0 156,116 + Psyr_0143 0.72 +0.5 156,116 + Psyr_0143 0.72 -0.4 156,116 + Psyr_0143 0.72 -0.9 156,116 + Psyr_0143 0.72 +0.4 156,116 + Psyr_0143 0.72 -0.4 156,116 + Psyr_0143 0.72 -0.7 156,116 + Psyr_0143 0.72 +0.1 156,117 - Psyr_0143 0.72 +0.2 156,117 - Psyr_0143 0.72 +0.4 156,250 + Psyr_0143 0.80 -0.2 156,250 + Psyr_0143 0.80 -0.4 156,250 + Psyr_0143 0.80 +1.4 156,250 + Psyr_0143 0.80 +2.1 156,251 - Psyr_0143 0.81 -0.7 156,307 + Psyr_0143 0.84 -0.4 156,308 - Psyr_0143 0.84 -1.4 156,308 - Psyr_0143 0.84 +0.1 156,308 - Psyr_0143 0.84 -0.0 156,440 + +0.0 156,440 + -0.9 156,618 - +0.6 156,618 - -2.4 156,624 - -0.4 156,624 - -0.3 156,642 + -1.0 156,642 + +0.0 156,642 + -0.0 156,642 + +0.4 156,642 + +0.4 156,642 + -0.4 156,642 + -2.3 156,642 + +0.1 156,642 + +0.8 156,642 + -1.2 156,642 + -0.8 156,642 + +0.6 156,642 + +0.4 156,642 + +0.8 156,642 + -1.9 156,642 + -1.5 156,642 + +0.3 156,642 + -0.4 156,642 + +1.9 156,642 + -1.6 156,642 + +0.9 156,643 - -0.6 156,643 - -0.4 156,643 - -0.3 156,643 - +0.3 156,643 - -1.3 156,643 - -1.3 156,643 - -0.8 156,643 - -0.3 156,643 - -0.9 156,643 - -0.4 156,643 - -1.3 156,643 - +0.4 156,643 - +1.0 156,643 - -0.7 156,643 - -1.3 156,643 - -0.5 156,643 - -1.0 156,646 + -0.4 156,646 + -0.2 156,646 + +0.8 156,646 + +1.1 156,646 + +0.6 156,647 - -0.8 156,647 - -0.6 156,647 - -0.2 156,647 - +1.1 156,647 - -0.7 156,647 - -0.4 156,647 - -1.1 156,669 + +0.1 156,669 + +0.0 156,803 + +0.3 156,921 + -0.8 157,094 + Psyr_0144 0.13 -0.4 157,094 + Psyr_0144 0.13 -0.8 157,094 + Psyr_0144 0.13 +1.6 157,094 + Psyr_0144 0.13 -0.7 157,094 + Psyr_0144 0.13 +0.3 157,095 - Psyr_0144 0.13 +1.6 157,095 - Psyr_0144 0.13 +0.3 157,095 - Psyr_0144 0.13 +1.8 157,103 + Psyr_0144 0.15 -1.1 157,103 + Psyr_0144 0.15 -0.4 157,103 + Psyr_0144 0.15 -0.6 157,103 + Psyr_0144 0.15 -0.5 157,104 - Psyr_0144 0.15 -0.0 157,191 - Psyr_0144 0.33 +1.0 157,338 + Psyr_0144 0.63 -0.2 157,338 + Psyr_0144 0.63 +0.6 157,339 - Psyr_0144 0.63 -0.6 157,339 - Psyr_0144 0.63 -1.4 157,339 - Psyr_0144 0.63 -0.5 157,339 - Psyr_0144 0.63 +0.7 157,352 + Psyr_0144 0.66 -0.4 157,352 + Psyr_0144 0.66 -0.9 157,352 + Psyr_0144 0.66 +0.1 157,352 + Psyr_0144 0.66 +0.6 157,353 - Psyr_0144 0.66 -0.3 157,353 - Psyr_0144 0.66 -0.0 157,353 - Psyr_0144 0.66 +0.6 157,353 - Psyr_0144 0.66 +0.8 157,364 + Psyr_0144 0.68 -0.3 157,365 - Psyr_0144 0.69 -0.1 157,471 + -2.3 157,472 - -0.2 157,479 + +0.9 157,480 - -0.2 157,482 - -0.3 157,486 - +1.3 157,519 + +0.3 157,519 + +0.6 157,523 + +0.5 157,523 + -0.1 157,523 + -0.4 157,523 + -0.5 157,523 + -1.2 157,523 + -0.0 157,524 - +0.7 157,524 - -1.2 157,524 - -0.6 157,524 - +0.2 157,524 - +0.8 157,532 + +0.4 157,532 + -0.1 157,532 + +0.3 157,532 + +0.1 157,532 + +0.2 157,532 + -0.8 157,532 + -0.3 157,532 + -0.8 157,532 + -0.4 157,532 + +0.8 157,532 + +0.6 157,532 + +0.3 157,532 + -2.1 157,532 + +0.6 157,532 + -0.5 157,532 + -0.4 157,532 + +0.7 157,532 + -0.8 157,532 + +0.4 157,532 + -1.0 157,532 + +0.3 157,532 + -1.8 157,532 + -0.1 157,532 + +0.6 157,532 + +0.6 157,533 - -0.4 157,533 - +0.6 157,533 - +0.2 157,533 - +0.0 157,533 - -0.3 157,533 - -0.4 157,533 - -0.1 157,533 - +1.2 157,533 - -0.9 157,533 - -0.2 157,533 - -1.3 157,533 - +0.5 157,533 - +1.9 157,533 - +0.0 157,533 - -1.4 157,533 - -1.7
Or see this region's nucleotide sequence