Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0102

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
112,931	-				+0.7
112,968	+				+0.1
112,968	+				+0.4
112,968	+				-0.4
112,968	+				+0.6
112,968	+				-0.1
112,968	+				+1.4
112,968	+				-1.5
112,968	+				-1.2
112,968	+				-0.6
112,968	+				-0.4
112,968	+				+0.5
112,968	+				-0.9
112,968	+				-0.2
112,969	-				-0.2
112,969	-				-0.4
112,969	-				-1.2
112,969	-				-0.6
112,969	-				+0.4
112,969	-				-1.6
112,969	-				+1.0
112,969	-				+0.9
112,969	-				-0.9
112,969	-				-0.7
112,994	+				-1.9
112,994	+				-1.0
112,995	-				-0.1
112,996	+				+0.2
112,996	+				-2.3
112,996	+				+1.1
112,997	-				-0.4
112,997	-				-0.7
113,070	+		Psyr_0101	0.17	+0.7
113,070	+		Psyr_0101	0.17	+0.6
113,071	-		Psyr_0101	0.17	-0.4
113,071	-		Psyr_0101	0.17	+0.6
113,072	+		Psyr_0101	0.17	+1.1
113,072	+		Psyr_0101	0.17	-0.2
113,072	+		Psyr_0101	0.17	+0.8
113,072	+		Psyr_0101	0.17	+1.6
113,072	+		Psyr_0101	0.17	-0.1
113,072	+		Psyr_0101	0.17	-0.5
113,072	+		Psyr_0101	0.17	-1.1
113,073	-		Psyr_0101	0.17	+0.2
113,073	-		Psyr_0101	0.17	-0.6
113,073	-		Psyr_0101	0.17	+0.9
113,073	-		Psyr_0101	0.17	-0.6
113,073	-		Psyr_0101	0.17	+0.1
113,073	-		Psyr_0101	0.17	-0.0
113,073	-		Psyr_0101	0.17	-0.9
113,073	-		Psyr_0101	0.17	+2.6
113,093	+		Psyr_0101	0.21	-1.1
113,093	+		Psyr_0101	0.21	-0.3
113,094	-		Psyr_0101	0.21	-0.1
113,131	+		Psyr_0101	0.29	+0.3
113,131	+		Psyr_0101	0.29	-0.1
113,131	+		Psyr_0101	0.29	-0.8
113,131	+		Psyr_0101	0.29	+0.3
113,132	-		Psyr_0101	0.29	-0.6
113,166	+		Psyr_0101	0.36	+1.1
113,166	+		Psyr_0101	0.36	-1.1
113,185	+		Psyr_0101	0.40	-1.4
113,185	+		Psyr_0101	0.40	-1.3
113,186	-		Psyr_0101	0.40	-0.4
113,186	-		Psyr_0101	0.40	-0.4
113,196	-		Psyr_0101	0.42	-0.9
113,325	+		Psyr_0101	0.67	-1.4
113,326	-				+0.1
113,392	+		Psyr_0101	0.81	-0.4
113,392	+		Psyr_0101	0.81	-0.2
113,472	-				-0.2
113,472	-				-0.4
113,472	-				-0.9
113,493	+				+0.7
113,516	-				-1.5
113,523	-				-0.8
113,534	+				-0.2
113,534	+				-0.0
113,535	-				-0.2
113,535	-				+0.1
113,535	-				+0.6
113,654	-				-0.4
113,735	+				-1.0
113,736	-				-1.0
113,737	+				-0.4
113,737	+				-1.6
113,737	+				-0.9
113,737	+				-0.6
113,737	+				-0.7
113,737	+				+0.4
113,737	+				+0.2
113,737	+				-2.8
113,738	-				+0.2
113,738	-				-1.3
113,738	-				-0.4
113,751	+				-2.0
113,751	+				-0.3
113,755	+				-1.0
113,755	+				-0.6
113,755	+				-2.4
113,755	+				-0.9
113,755	+				-0.2
113,755	+				+1.2
113,755	+				+0.6
113,755	+				-1.6
113,755	+				-0.8
113,755	+				+0.3
113,755	+				-2.5
113,755	+				+0.0
113,755	+				+0.1
113,755	+				-1.3
113,755	+				-0.8
113,756	-				-0.2
113,756	-				-0.8
113,756	-				-1.2
113,756	-				-0.1
113,756	-				-0.4
113,756	-				-0.8
113,756	-				-0.4
113,756	-				-1.4
113,756	-				+0.0
113,756	-				-0.2
113,756	-				-0.7
113,793	+				-0.2
113,793	+				-0.5
113,793	+				-0.8
113,794	-				+1.0
113,804	-				+1.0
113,875	+				-2.1
113,875	+				-1.3
113,876	-				-3.3
113,876	-				-0.7
113,876	-				-0.2
113,876	-				-1.9
113,876	-				-0.6
113,876	-				-1.3
113,963	+				-2.6
113,964	-				-1.0
114,021	+		Psyr_0102	0.19	+1.8
114,021	+		Psyr_0102	0.19	-1.6
114,021	+		Psyr_0102	0.19	+0.3
114,021	+		Psyr_0102	0.19	+1.0
114,021	+		Psyr_0102	0.19	-0.8
114,021	+		Psyr_0102	0.19	-2.0
114,021	+		Psyr_0102	0.19	-0.7
114,022	-		Psyr_0102	0.19	+0.2
114,022	-		Psyr_0102	0.19	-1.0
114,022	-		Psyr_0102	0.19	+0.9
114,022	-		Psyr_0102	0.19	+0.2
114,022	-		Psyr_0102	0.19	-0.2
114,022	-		Psyr_0102	0.19	-0.4
114,024	+		Psyr_0102	0.20	-0.8
114,025	-		Psyr_0102	0.20	-0.2
114,025	-		Psyr_0102	0.20	+0.6
114,028	+		Psyr_0102	0.20	-1.6
114,028	+		Psyr_0102	0.20	-0.8
114,029	-		Psyr_0102	0.21	-0.3
114,029	-		Psyr_0102	0.21	-0.6
114,029	-		Psyr_0102	0.21	-1.0
114,086	+		Psyr_0102	0.30	-0.6
114,086	+		Psyr_0102	0.30	+0.3
114,087	-		Psyr_0102	0.30	-0.9
114,119	-		Psyr_0102	0.36	-0.2
114,144	+		Psyr_0102	0.40	-2.6
114,165	-		Psyr_0102	0.43	-0.9
114,224	+		Psyr_0102	0.53	-0.0
114,224	+		Psyr_0102	0.53	+0.3
114,224	+		Psyr_0102	0.53	-0.4
114,225	-		Psyr_0102	0.53	+0.3
114,225	-		Psyr_0102	0.53	+0.1
114,227	+		Psyr_0102	0.54	-1.6
114,228	-		Psyr_0102	0.54	-0.3
114,228	-		Psyr_0102	0.54	-0.2
114,246	-		Psyr_0102	0.57	-1.0
114,269	+		Psyr_0102	0.61	+0.6
114,269	+		Psyr_0102	0.61	+0.2
114,270	-		Psyr_0102	0.61	-0.7
114,311	+		Psyr_0102	0.68	-1.0
114,311	+		Psyr_0102	0.68	-1.6
114,311	+		Psyr_0102	0.68	-1.3
114,360	+		Psyr_0102	0.76	-2.0
114,360	+		Psyr_0102	0.76	+1.2
114,360	+		Psyr_0102	0.76	-0.1
114,360	+		Psyr_0102	0.76	+0.4
114,360	+		Psyr_0102	0.76	-0.0
114,360	+		Psyr_0102	0.76	-0.9
114,360	+		Psyr_0102	0.76	-0.6
114,360	+		Psyr_0102	0.76	-1.0
114,361	-		Psyr_0102	0.76	+1.3
114,361	-		Psyr_0102	0.76	-0.4
114,361	-		Psyr_0102	0.76	-0.8
114,361	-		Psyr_0102	0.76	+1.3
114,390	-		Psyr_0102	0.81	-0.4
114,396	-		Psyr_0102	0.82	-1.3
114,409	+		Psyr_0102	0.84	-1.1
114,410	-		Psyr_0102	0.84	-2.3
114,413	+		Psyr_0102	0.85	+0.3
114,413	+		Psyr_0102	0.85	-0.1
114,414	-		Psyr_0102	0.85	-0.4
114,414	-		Psyr_0102	0.85	-0.9
114,561	-		Psyr_0103	0.12	+0.6
114,625	-		Psyr_0103	0.29	-3.0
114,658	-		Psyr_0103	0.38	-3.5
114,717	+		Psyr_0103	0.54	-1.1
114,717	+		Psyr_0103	0.54	+0.3
114,717	+		Psyr_0103	0.54	+0.4
114,718	-		Psyr_0103	0.54	-0.1
114,718	-		Psyr_0103	0.54	-0.6
114,718	-		Psyr_0103	0.54	-1.4
114,718	-		Psyr_0103	0.54	-3.8
114,718	-		Psyr_0103	0.54	-1.6
114,757	+		Psyr_0103	0.64	+0.3
114,774	-		Psyr_0103	0.69	-0.8
114,808	+		Psyr_0103	0.78	+0.1
114,808	+		Psyr_0103	0.78	-0.3
114,809	-		Psyr_0103	0.78	-0.9
114,909	-				-0.3
114,935	+				+0.0
114,992	+				+1.1
114,993	-				-2.7
114,996	-				-1.0
115,014	+				-0.4
115,015	-				-1.9
115,015	-				-0.1
115,015	-				-1.4
115,015	-				+0.8
115,015	-				-0.0
115,065	+				+1.1
115,066	-				-1.4
115,071	+				+0.4
115,071	+				+1.9
115,071	+				-0.7
115,072	-				-0.4
115,072	-				-1.4
115,072	-				+0.1
115,072	-				-0.4
115,072	-				-1.2
115,072	-				-2.6
115,072	-				-1.0
115,072	-				-1.2
115,072	-				-1.7
115,080	+				-0.6
115,081	-				-0.4
115,150	+				+0.0
115,168	+				-0.6
115,168	+				+0.3
115,169	-				-0.8
115,169	-				-0.4
115,204	+				+0.3
115,204	+				-0.4
115,240	+				-0.3
115,241	-				-0.7
115,241	-				+1.1
115,273	-				-1.0
115,321	+				-0.4
115,322	-				+1.0
115,322	-				-1.0
115,353	+				-1.8
115,353	+				-0.0
115,354	-				+1.1
115,354	-				-2.5
115,371	-				-0.0
115,382	+				-1.6
115,382	+				+0.1
115,383	-				-0.0
115,383	-				-0.9
115,383	-				-2.0
115,418	-				-1.4
115,418	-				-0.9