Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0098

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
108,483	-		Psyr_0097	0.22	+0.3
108,504	-		Psyr_0097	0.24	-0.7
108,515	+		Psyr_0097	0.24	+1.4
108,516	-		Psyr_0097	0.25	+0.3
108,548	+		Psyr_0097	0.27	-0.7
108,549	-		Psyr_0097	0.27	+1.6
108,614	+		Psyr_0097	0.32	+0.0
108,813	+		Psyr_0097	0.48	-2.8
108,814	-		Psyr_0097	0.49	-0.5
108,818	+		Psyr_0097	0.49	+0.1
108,885	-		Psyr_0097	0.54	-0.5
108,964	+		Psyr_0097	0.61	-0.6
108,964	+		Psyr_0097	0.61	-0.5
109,014	+		Psyr_0097	0.65	-0.8
109,090	-		Psyr_0097	0.71	-1.2
109,141	+		Psyr_0097	0.75	-0.0
109,404	+				+0.6
109,493	-				-2.6
109,568	+				-0.5
109,568	+				-0.1
109,568	+				+0.3
109,569	-				-0.8
109,607	-				-2.3
109,642	+		Psyr_0098	0.10	-0.8
109,756	+		Psyr_0098	0.16	-1.5
109,757	-		Psyr_0098	0.16	+0.3
109,793	-		Psyr_0098	0.18	-1.7
109,821	+		Psyr_0098	0.20	-0.4
109,904	+		Psyr_0098	0.24	+0.2
109,952	+		Psyr_0098	0.27	+1.4
110,005	-		Psyr_0098	0.30	-0.5
110,021	+		Psyr_0098	0.30	-1.9
110,035	+		Psyr_0098	0.31	+0.7
110,036	-		Psyr_0098	0.31	+0.6
110,036	-		Psyr_0098	0.31	-1.7
110,036	-		Psyr_0098	0.31	-1.8
110,161	+		Psyr_0098	0.38	-0.4
110,213	+		Psyr_0098	0.41	-3.8
110,316	-		Psyr_0098	0.46	-0.9
110,474	+		Psyr_0098	0.55	-2.4
110,475	-		Psyr_0098	0.55	-2.1
110,508	+		Psyr_0098	0.56	-0.2
110,573	+		Psyr_0098	0.60	-0.8
110,573	+		Psyr_0098	0.60	-0.9
110,574	-		Psyr_0098	0.60	-2.4
110,574	-		Psyr_0098	0.60	+0.6
110,574	-		Psyr_0098	0.60	+0.6
110,585	+		Psyr_0098	0.61	-0.5
110,587	+		Psyr_0098	0.61	-0.7
110,715	-		Psyr_0098	0.67	-0.9
110,715	-		Psyr_0098	0.67	-0.4
110,752	+		Psyr_0098	0.69	-2.8
110,752	+		Psyr_0098	0.69	-2.4
110,752	+		Psyr_0098	0.69	-0.7
110,752	+		Psyr_0098	0.69	-0.3
110,752	-		Psyr_0098	0.69	-1.0
110,754	+		Psyr_0098	0.70	-0.8
110,834	+		Psyr_0098	0.74	-2.3
110,836	+		Psyr_0098	0.74	-0.7
110,836	+		Psyr_0098	0.74	+0.5
110,836	+		Psyr_0098	0.74	+0.9
110,836	+		Psyr_0098	0.74	+0.6
110,836	+		Psyr_0098	0.74	-1.0
110,836	+		Psyr_0098	0.74	+0.3
110,837	-		Psyr_0098	0.74	-0.3
110,837	-		Psyr_0098	0.74	-0.8
110,837	-		Psyr_0098	0.74	-0.9
110,837	-		Psyr_0098	0.74	-0.8
110,837	-		Psyr_0098	0.74	-0.8
110,837	-		Psyr_0098	0.74	+0.2
110,837	-		Psyr_0098	0.74	-2.4
110,837	-		Psyr_0098	0.74	+0.7
110,837	-		Psyr_0098	0.74	-1.3
110,837	-		Psyr_0098	0.74	+0.0
110,837	-		Psyr_0098	0.74	-1.4
110,837	-		Psyr_0098	0.74	-0.4
110,838	+		Psyr_0098	0.74	-0.4
110,839	-		Psyr_0098	0.74	+1.0
110,890	+		Psyr_0098	0.77	+0.8
110,914	+		Psyr_0098	0.78	-0.2
110,914	+		Psyr_0098	0.78	+0.2
110,914	+		Psyr_0098	0.78	+0.3
110,915	-		Psyr_0098	0.78	-3.3
110,957	+		Psyr_0098	0.80	-0.8
110,958	-		Psyr_0098	0.80	+0.2
110,993	+		Psyr_0098	0.82	-0.1
110,993	+		Psyr_0098	0.82	+0.0
110,993	+		Psyr_0098	0.82	-1.0
111,015	-		Psyr_0098	0.83	-1.1
111,027	-		Psyr_0098	0.84	-0.3
111,065	+		Psyr_0098	0.86	+0.3
111,065	+		Psyr_0098	0.86	+0.3
111,065	+		Psyr_0098	0.86	-0.2
111,065	+		Psyr_0098	0.86	+0.0
111,066	-		Psyr_0098	0.86	-0.3
111,066	-		Psyr_0098	0.86	-1.4
111,066	-		Psyr_0098	0.86	-3.0
111,066	-		Psyr_0098	0.86	-0.8
111,066	-		Psyr_0098	0.86	+1.4
111,099	-		Psyr_0098	0.88	+0.0
111,099	-		Psyr_0098	0.88	-1.0
111,115	+		Psyr_0098	0.89	-1.2
111,126	-		Psyr_0098	0.89	-1.9
111,126	-		Psyr_0098	0.89	-0.1
111,137	+				-0.0
111,137	+				-0.4
111,137	+				-0.3
111,138	-				-0.4
111,142	+				-0.7
111,182	+				-0.0
111,258	-				-2.0
111,262	-				-0.8
111,444	+		Psyr_0099	0.53	-0.6
111,512	-		Psyr_0099	0.86	-0.6
111,523	+				-0.2
111,527	+				-0.1
111,543	+				-1.0
111,581	+				-0.7
111,582	-				-0.2
111,590	-				-1.3
111,624	-				-0.9
111,712	-				-0.3
111,716	+				-0.7
111,716	+				+0.3
111,717	-				-0.1
111,717	-				-0.4
111,717	-				-0.3
111,717	-				-0.2
111,756	-				-1.5
111,801	+				+0.6
111,801	+				+0.6
111,801	+				-0.2
111,801	+				-0.5
111,801	+				+0.6
111,802	-				-1.2
111,802	-				-0.7
111,802	-				-0.1
111,802	-				-0.3
111,905	-				-0.3
111,906	+				-1.4
111,906	+				-0.8
111,906	+				-0.7
111,906	+				-1.0
111,906	+				-0.9
111,907	-				+0.6
111,907	-				-0.0
111,908	+				-0.1
111,908	+				+0.7
111,909	-				+1.1
111,910	+				-3.0
111,910	+				-1.1
111,910	+				-1.0
111,910	+				-0.6
111,911	-				+0.1
111,911	-				+0.9
111,911	-				+0.3
111,911	-				+0.2
111,914	+				-0.9
111,914	+				-0.3
111,915	-				+0.6
111,915	-				-1.7
111,915	-				-1.5
111,916	+				-0.7
111,916	+				-0.8
111,917	-				+1.1
111,917	-				-0.4
111,917	-				+0.1
111,917	-				-0.2
111,960	-				-0.4
111,973	+				-0.6
111,973	+				+0.1
111,974	-				-0.7
111,997	-				-2.5
111,997	-				+0.5
112,021	-				-1.8
112,115	+				-1.6
112,147	-				+0.1
112,173	+				-0.9
112,173	+				-0.9
112,173	+				-0.8