Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4715

Experiment: Carnitine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4714 and Pf6N2E2_4715 are separated by 153 nucleotidesPf6N2E2_4715 and Pf6N2E2_4716 are separated by 195 nucleotides Pf6N2E2_4714 - GbcB Glycine betaine demethylase subunit B, at 5,450,351 to 5,451,517 _4714 Pf6N2E2_4715 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 5,451,671 to 5,452,711 _4715 Pf6N2E2_4716 - Membrane protein, putative, at 5,452,907 to 5,453,611 _4716 Position (kb) 5451 5452 5453Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5450.798 kb on + strand, within Pf6N2E2_4714at 5450.798 kb on + strand, within Pf6N2E2_4714at 5450.798 kb on + strand, within Pf6N2E2_4714at 5450.852 kb on + strand, within Pf6N2E2_4714at 5450.852 kb on + strand, within Pf6N2E2_4714at 5450.853 kb on - strand, within Pf6N2E2_4714at 5450.884 kb on + strand, within Pf6N2E2_4714at 5450.885 kb on - strand, within Pf6N2E2_4714at 5450.918 kb on + strand, within Pf6N2E2_4714at 5450.918 kb on + strand, within Pf6N2E2_4714at 5450.918 kb on + strand, within Pf6N2E2_4714at 5450.919 kb on - strand, within Pf6N2E2_4714at 5450.919 kb on - strand, within Pf6N2E2_4714at 5450.919 kb on - strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.101 kb on + strand, within Pf6N2E2_4714at 5451.102 kb on - strand, within Pf6N2E2_4714at 5451.102 kb on - strand, within Pf6N2E2_4714at 5451.102 kb on - strand, within Pf6N2E2_4714at 5451.102 kb on - strand, within Pf6N2E2_4714at 5451.102 kb on - strand, within Pf6N2E2_4714at 5451.102 kb on - strand, within Pf6N2E2_4714at 5451.179 kb on - strand, within Pf6N2E2_4714at 5451.464 kb on + strandat 5451.465 kb on - strandat 5451.568 kb on + strandat 5451.673 kb on - strandat 5451.714 kb on - strandat 5451.778 kb on - strand, within Pf6N2E2_4715at 5451.778 kb on - strand, within Pf6N2E2_4715at 5451.778 kb on - strand, within Pf6N2E2_4715at 5452.027 kb on - strand, within Pf6N2E2_4715at 5452.258 kb on - strand, within Pf6N2E2_4715at 5452.258 kb on - strand, within Pf6N2E2_4715at 5452.476 kb on + strand, within Pf6N2E2_4715at 5452.608 kb on + strandat 5452.674 kb on + strandat 5452.674 kb on + strandat 5452.729 kb on - strandat 5452.729 kb on - strandat 5452.729 kb on - strandat 5452.729 kb on - strandat 5452.902 kb on + strandat 5452.902 kb on + strandat 5452.902 kb on + strandat 5452.902 kb on + strandat 5452.903 kb on - strandat 5452.903 kb on - strandat 5452.903 kb on - strandat 5452.983 kb on - strand, within Pf6N2E2_4716at 5453.009 kb on + strand, within Pf6N2E2_4716at 5453.009 kb on + strand, within Pf6N2E2_4716at 5453.009 kb on + strand, within Pf6N2E2_4716at 5453.009 kb on + strand, within Pf6N2E2_4716at 5453.009 kb on + strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.010 kb on - strand, within Pf6N2E2_4716at 5453.119 kb on - strand, within Pf6N2E2_4716at 5453.119 kb on - strand, within Pf6N2E2_4716at 5453.145 kb on - strand, within Pf6N2E2_4716at 5453.272 kb on - strand, within Pf6N2E2_4716at 5453.272 kb on - strand, within Pf6N2E2_4716at 5453.364 kb on - strand, within Pf6N2E2_4716at 5453.364 kb on - strand, within Pf6N2E2_4716at 5453.420 kb on + strand, within Pf6N2E2_4716at 5453.420 kb on + strand, within Pf6N2E2_4716at 5453.420 kb on + strand, within Pf6N2E2_4716at 5453.421 kb on - strand, within Pf6N2E2_4716at 5453.552 kb on + strandat 5453.673 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
remove
5,450,798 + Pf6N2E2_4714 0.38 -4.9
5,450,798 + Pf6N2E2_4714 0.38 -2.2
5,450,798 + Pf6N2E2_4714 0.38 -4.2
5,450,852 + Pf6N2E2_4714 0.43 -2.0
5,450,852 + Pf6N2E2_4714 0.43 -2.9
5,450,853 - Pf6N2E2_4714 0.43 -3.6
5,450,884 + Pf6N2E2_4714 0.46 -3.7
5,450,885 - Pf6N2E2_4714 0.46 -3.1
5,450,918 + Pf6N2E2_4714 0.49 -3.2
5,450,918 + Pf6N2E2_4714 0.49 -2.5
5,450,918 + Pf6N2E2_4714 0.49 -4.7
5,450,919 - Pf6N2E2_4714 0.49 -3.5
5,450,919 - Pf6N2E2_4714 0.49 -3.4
5,450,919 - Pf6N2E2_4714 0.49 -4.6
5,451,101 + Pf6N2E2_4714 0.64 -3.3
5,451,101 + Pf6N2E2_4714 0.64 -1.6
5,451,101 + Pf6N2E2_4714 0.64 -2.9
5,451,101 + Pf6N2E2_4714 0.64 -3.1
5,451,101 + Pf6N2E2_4714 0.64 -4.6
5,451,101 + Pf6N2E2_4714 0.64 -2.3
5,451,101 + Pf6N2E2_4714 0.64 -3.5
5,451,101 + Pf6N2E2_4714 0.64 -3.8
5,451,101 + Pf6N2E2_4714 0.64 -2.4
5,451,101 + Pf6N2E2_4714 0.64 -3.9
5,451,102 - Pf6N2E2_4714 0.64 -2.7
5,451,102 - Pf6N2E2_4714 0.64 -2.8
5,451,102 - Pf6N2E2_4714 0.64 -1.7
5,451,102 - Pf6N2E2_4714 0.64 -2.7
5,451,102 - Pf6N2E2_4714 0.64 -3.6
5,451,102 - Pf6N2E2_4714 0.64 -2.7
5,451,179 - Pf6N2E2_4714 0.71 -4.5
5,451,464 + -3.2
5,451,465 - -3.8
5,451,568 + -0.5
5,451,673 - -0.1
5,451,714 - +0.9
5,451,778 - Pf6N2E2_4715 0.10 +0.3
5,451,778 - Pf6N2E2_4715 0.10 +0.3
5,451,778 - Pf6N2E2_4715 0.10 -1.2
5,452,027 - Pf6N2E2_4715 0.34 +0.5
5,452,258 - Pf6N2E2_4715 0.56 +0.7
5,452,258 - Pf6N2E2_4715 0.56 -0.3
5,452,476 + Pf6N2E2_4715 0.77 +1.0
5,452,608 + +0.8
5,452,674 + +0.4
5,452,674 + +0.3
5,452,729 - +0.1
5,452,729 - +0.8
5,452,729 - +0.1
5,452,729 - +0.9
5,452,902 + +1.4
5,452,902 + +1.2
5,452,902 + -0.5
5,452,902 + +0.9
5,452,903 - +0.4
5,452,903 - -0.1
5,452,903 - +0.2
5,452,983 - Pf6N2E2_4716 0.11 +0.5
5,453,009 + Pf6N2E2_4716 0.14 -0.3
5,453,009 + Pf6N2E2_4716 0.14 +0.5
5,453,009 + Pf6N2E2_4716 0.14 -0.5
5,453,009 + Pf6N2E2_4716 0.14 +0.5
5,453,009 + Pf6N2E2_4716 0.14 +0.8
5,453,010 - Pf6N2E2_4716 0.15 -0.9
5,453,010 - Pf6N2E2_4716 0.15 +1.0
5,453,010 - Pf6N2E2_4716 0.15 -0.0
5,453,010 - Pf6N2E2_4716 0.15 +0.2
5,453,010 - Pf6N2E2_4716 0.15 +0.4
5,453,010 - Pf6N2E2_4716 0.15 +1.1
5,453,010 - Pf6N2E2_4716 0.15 +0.2
5,453,010 - Pf6N2E2_4716 0.15 -0.5
5,453,119 - Pf6N2E2_4716 0.30 -0.5
5,453,119 - Pf6N2E2_4716 0.30 +1.4
5,453,145 - Pf6N2E2_4716 0.34 -0.3
5,453,272 - Pf6N2E2_4716 0.52 +0.6
5,453,272 - Pf6N2E2_4716 0.52 +0.7
5,453,364 - Pf6N2E2_4716 0.65 -2.5
5,453,364 - Pf6N2E2_4716 0.65 +0.4
5,453,420 + Pf6N2E2_4716 0.73 -0.8
5,453,420 + Pf6N2E2_4716 0.73 +0.3
5,453,420 + Pf6N2E2_4716 0.73 +1.3
5,453,421 - Pf6N2E2_4716 0.73 +0.6
5,453,552 + +0.7
5,453,673 - -0.3

Or see this region's nucleotide sequence