Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_253 and Pf6N2E2_254 are separated by 146 nucleotides Pf6N2E2_254 and Pf6N2E2_255 overlap by 4 nucleotides Pf6N2E2_255 and Pf6N2E2_256 overlap by 8 nucleotides
Pf6N2E2_253 - Non-heme chloroperoxidase (EC 1.11.1.10), at 317,279 to 318,100
_253
Pf6N2E2_254 - Transcriptional regulator, LysR family, at 318,247 to 319,194
_254
Pf6N2E2_255 - DoxX family protein, at 319,191 to 319,604
_255
Pf6N2E2_256 - putative membrane protein, at 319,597 to 320,235
_256
Position (kb) 318
319
320 Strain fitness (log2 ratio) -1
0
1
2 at 317.247 kb on - strand at 317.294 kb on - strand at 317.315 kb on + strand at 317.315 kb on + strand at 317.315 kb on + strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.318 kb on + strand at 317.318 kb on + strand at 317.319 kb on - strand at 317.742 kb on + strand, within Pf6N2E2_253 at 317.743 kb on - strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.931 kb on + strand, within Pf6N2E2_253 at 318.107 kb on + strand at 318.107 kb on + strand at 318.107 kb on + strand at 318.108 kb on - strand at 318.712 kb on + strand, within Pf6N2E2_254 at 318.712 kb on + strand, within Pf6N2E2_254 at 318.817 kb on + strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.988 kb on + strand, within Pf6N2E2_254 at 319.299 kb on + strand, within Pf6N2E2_255 at 319.299 kb on + strand, within Pf6N2E2_255 at 319.299 kb on + strand, within Pf6N2E2_255 at 319.300 kb on - strand, within Pf6N2E2_255 at 319.300 kb on - strand, within Pf6N2E2_255 at 319.525 kb on + strand, within Pf6N2E2_255 at 319.525 kb on + strand, within Pf6N2E2_255 at 319.526 kb on - strand, within Pf6N2E2_255 at 319.526 kb on - strand, within Pf6N2E2_255 at 319.537 kb on + strand, within Pf6N2E2_255 at 319.537 kb on + strand, within Pf6N2E2_255 at 319.538 kb on - strand, within Pf6N2E2_255 at 319.538 kb on - strand, within Pf6N2E2_255 at 319.733 kb on + strand, within Pf6N2E2_256 at 319.734 kb on - strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.143 kb on + strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 317,247 - +1.4 317,294 - +0.8 317,315 + +0.7 317,315 + -0.6 317,315 + +0.4 317,316 - -0.7 317,316 - -0.7 317,316 - -0.7 317,316 - +0.9 317,318 + +0.0 317,318 + -0.7 317,319 - +0.0 317,742 + Pf6N2E2_253 0.56 +0.1 317,743 - Pf6N2E2_253 0.56 +0.6 317,744 + Pf6N2E2_253 0.57 +0.2 317,744 + Pf6N2E2_253 0.57 +0.4 317,744 + Pf6N2E2_253 0.57 -0.3 317,744 + Pf6N2E2_253 0.57 +0.9 317,745 - Pf6N2E2_253 0.57 +0.5 317,745 - Pf6N2E2_253 0.57 +0.7 317,745 - Pf6N2E2_253 0.57 -0.1 317,745 - Pf6N2E2_253 0.57 -0.0 317,745 - Pf6N2E2_253 0.57 +0.1 317,858 + Pf6N2E2_253 0.70 +1.2 317,858 + Pf6N2E2_253 0.70 +1.1 317,858 + Pf6N2E2_253 0.70 +0.7 317,858 + Pf6N2E2_253 0.70 +0.3 317,858 + Pf6N2E2_253 0.70 -0.5 317,858 + Pf6N2E2_253 0.70 +0.3 317,858 + Pf6N2E2_253 0.70 -0.0 317,858 + Pf6N2E2_253 0.70 +0.4 317,858 + Pf6N2E2_253 0.70 -0.3 317,858 + Pf6N2E2_253 0.70 -0.0 317,859 - Pf6N2E2_253 0.71 +0.4 317,859 - Pf6N2E2_253 0.71 +0.2 317,859 - Pf6N2E2_253 0.71 +0.1 317,859 - Pf6N2E2_253 0.71 +0.3 317,859 - Pf6N2E2_253 0.71 -0.0 317,859 - Pf6N2E2_253 0.71 -0.0 317,859 - Pf6N2E2_253 0.71 -0.5 317,859 - Pf6N2E2_253 0.71 -1.3 317,931 + Pf6N2E2_253 0.79 +0.8 318,107 + -0.5 318,107 + +0.2 318,107 + +0.3 318,108 - +0.5 318,712 + Pf6N2E2_254 0.49 +0.5 318,712 + Pf6N2E2_254 0.49 +0.7 318,817 + Pf6N2E2_254 0.60 +0.6 318,818 - Pf6N2E2_254 0.60 -0.3 318,818 - Pf6N2E2_254 0.60 -0.4 318,818 - Pf6N2E2_254 0.60 +0.1 318,818 - Pf6N2E2_254 0.60 -0.2 318,988 + Pf6N2E2_254 0.78 -0.1 319,299 + Pf6N2E2_255 0.26 -1.1 319,299 + Pf6N2E2_255 0.26 -0.2 319,299 + Pf6N2E2_255 0.26 -0.5 319,300 - Pf6N2E2_255 0.26 -0.3 319,300 - Pf6N2E2_255 0.26 +0.2 319,525 + Pf6N2E2_255 0.81 +0.2 319,525 + Pf6N2E2_255 0.81 -0.5 319,526 - Pf6N2E2_255 0.81 +0.6 319,526 - Pf6N2E2_255 0.81 -1.3 319,537 + Pf6N2E2_255 0.84 -0.0 319,537 + Pf6N2E2_255 0.84 +0.0 319,538 - Pf6N2E2_255 0.84 +1.1 319,538 - Pf6N2E2_255 0.84 -0.3 319,733 + Pf6N2E2_256 0.21 -0.2 319,734 - Pf6N2E2_256 0.21 -0.9 320,092 + Pf6N2E2_256 0.77 -1.1 320,092 + Pf6N2E2_256 0.77 +0.4 320,092 + Pf6N2E2_256 0.77 +0.7 320,092 + Pf6N2E2_256 0.77 +1.2 320,093 - Pf6N2E2_256 0.78 +0.5 320,093 - Pf6N2E2_256 0.78 -0.7 320,093 - Pf6N2E2_256 0.78 +2.2 320,093 - Pf6N2E2_256 0.78 +0.4 320,143 + Pf6N2E2_256 0.85 +0.9 320,144 - Pf6N2E2_256 0.86 -1.1 320,144 - Pf6N2E2_256 0.86 +0.2 320,144 - Pf6N2E2_256 0.86 +0.5 320,144 - Pf6N2E2_256 0.86 +0.4 320,144 - Pf6N2E2_256 0.86 +0.6
Or see this region's nucleotide sequence