Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2877

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
3,223,418	+		Pf1N1B4_2876	0.39	+2.1
3,223,621	-				+0.3
3,223,636	+				+0.3
3,223,636	+				-0.9
3,223,636	+				+0.9
3,223,636	+				+0.9
3,223,636	+				+0.5
3,223,644	+				-0.7
3,223,644	+				+0.3
3,223,644	+				-0.7
3,223,644	+				+0.4
3,223,644	+				+0.2
3,223,644	+				-1.7
3,223,644	+				+1.3
3,223,645	-				-0.7
3,223,645	-				-0.3
3,223,645	-				+0.8
3,223,645	-				+0.5
3,223,645	-				-0.3
3,223,648	+				-0.5
3,223,648	+				+1.3
3,223,648	+				-0.3
3,223,648	+				+1.6
3,223,648	+				+0.9
3,223,648	+				-0.4
3,223,648	+				+0.2
3,223,648	+				-1.0
3,223,648	+				+0.3
3,223,648	+				-1.5
3,223,649	-				-1.7
3,223,649	-				+2.9
3,223,649	-				-0.5
3,223,649	-				+0.9
3,223,649	-				-0.2
3,223,649	-				+1.3
3,223,649	-				+0.5
3,223,649	-				+0.5
3,223,649	-				+1.1
3,223,649	-				+0.6
3,223,649	-				+0.0
3,223,649	-				+0.2
3,223,649	-				+0.8
3,223,753	+		Pf1N1B4_2877	0.26	-1.5
3,223,754	-		Pf1N1B4_2877	0.26	-0.3
3,223,754	-		Pf1N1B4_2877	0.26	-1.0
3,223,754	-		Pf1N1B4_2877	0.26	+0.2
3,223,754	-		Pf1N1B4_2877	0.26	+0.3
3,223,803	-		Pf1N1B4_2877	0.38	-1.3
3,223,803	-		Pf1N1B4_2877	0.38	+0.1
3,223,865	+		Pf1N1B4_2877	0.52	-2.1
3,223,865	+		Pf1N1B4_2877	0.52	-0.3
3,223,993	+		Pf1N1B4_2877	0.83	-0.8
3,223,993	+		Pf1N1B4_2877	0.83	+0.3
3,223,993	+		Pf1N1B4_2877	0.83	-1.5
3,223,993	+		Pf1N1B4_2877	0.83	-0.9
3,223,994	-		Pf1N1B4_2877	0.83	-1.6
3,223,994	-		Pf1N1B4_2877	0.83	-1.7
3,223,994	-		Pf1N1B4_2877	0.83	-1.3
3,223,994	-		Pf1N1B4_2877	0.83	+0.0
3,223,994	-		Pf1N1B4_2877	0.83	-1.9
3,223,994	-		Pf1N1B4_2877	0.83	-1.0
3,223,994	-		Pf1N1B4_2877	0.83	+0.3
3,223,994	-		Pf1N1B4_2877	0.83	-1.0
3,223,994	-		Pf1N1B4_2877	0.83	-1.3
3,223,995	+		Pf1N1B4_2877	0.83	-1.5
3,223,995	+				+1.3
3,223,995	+		Pf1N1B4_2877	0.83	+0.6
3,223,995	+				+0.3
3,223,995	+		Pf1N1B4_2877	0.83	+0.7
3,223,996	-		Pf1N1B4_2877	0.83	-0.5
3,223,996	-		Pf1N1B4_2877	0.83	-2.6
3,223,996	-		Pf1N1B4_2877	0.83	-3.4
3,223,996	-		Pf1N1B4_2877	0.83	-1.7
3,223,996	-		Pf1N1B4_2877	0.83	-1.0
3,223,996	-		Pf1N1B4_2877	0.83	-0.1
3,223,996	-		Pf1N1B4_2877	0.83	-1.1
3,223,996	-		Pf1N1B4_2877	0.83	-0.3
3,224,099	+				+0.6
3,224,145	+				-0.3
3,224,146	-				-1.8
3,224,146	-				-1.8
3,224,146	-				-1.0
3,224,146	-				-1.5
3,224,146	-				-2.7
3,224,146	-				-1.3
3,224,154	+				+0.5
3,224,155	-				-1.0
3,224,213	+				-0.7
3,224,214	-				+0.3
3,224,245	-				-0.7
3,224,245	-				-1.5
3,224,277	+				-0.7
3,224,277	+				-1.0
3,224,277	+				+0.3
3,224,278	-				-2.4
3,224,341	+				-1.3
3,224,341	+				+2.6
3,224,341	+				+0.0
3,224,342	-				-0.7
3,224,342	-				-2.3
3,224,342	-				-0.5
3,224,364	+				+0.9
3,224,365	-				-1.5
3,224,402	+				-0.1
3,224,402	+				-1.1
3,224,402	+				+0.7
3,224,403	-				+0.7
3,224,403	-				-2.0
3,224,403	-				-3.2
3,224,403	-				-1.8
3,224,403	-				-2.7
3,224,408	+				-0.7
3,224,408	+				+1.3
3,224,408	+				-0.7
3,224,408	+				-0.5
3,224,408	+				+0.7
3,224,408	+				-0.5
3,224,408	+				+0.3
3,224,408	+				-0.7
3,224,408	+				+0.6
3,224,408	+				+0.0
3,224,409	-				-1.3
3,224,409	-				-1.0
3,224,409	-				-3.1
3,224,409	-				-2.1
3,224,409	-				+0.0
3,224,409	-				-1.4
3,224,409	-				-1.8
3,224,409	-				-2.1
3,224,409	-				-2.7
3,224,409	-				-0.3
3,224,409	-				-1.0
3,224,428	+				+0.3
3,224,428	+				-0.7
3,224,428	+				+1.3
3,224,428	+				-0.3
3,224,428	+				-0.8
3,224,428	+				+1.0
3,224,428	+				+2.7
3,224,428	+				-0.3
3,224,428	+				+0.9
3,224,428	+				-2.0
3,224,428	+				+0.5
3,224,428	+				-0.7
3,224,428	+				+0.6
3,224,429	-				-1.8
3,224,429	-				-0.7
3,224,429	-				-2.0
3,224,429	-				-1.5
3,224,429	-				-0.7
3,224,429	-				-1.5
3,224,429	-				-0.7
3,224,429	-				-0.3
3,224,452	+				+1.3
3,224,452	+				-0.1
3,224,453	-				-2.8
3,224,476	+				-0.3
3,224,476	+				-1.0
3,224,526	+				-0.3
3,224,526	+				-0.3
3,224,526	+				+1.3
3,224,526	+				-1.0
3,224,526	+				-1.0
3,224,526	+				+0.7
3,224,526	+				-1.7
3,224,526	+				-0.7
3,224,526	+				+0.3
3,224,527	-				-1.8
3,224,527	-				-1.1
3,224,527	-				-1.8
3,224,527	-				-2.1
3,224,527	-				+0.3
3,224,527	-				-0.7
3,224,527	-				-0.7
3,224,527	-				-1.5
3,224,528	+				-3.1
3,224,528	+				-1.8
3,224,528	+				-0.3
3,224,528	+				-1.0
3,224,528	+				-1.0
3,224,528	+				+0.7
3,224,528	+				-1.0
3,224,528	+				-2.0
3,224,528	+				-1.7
3,224,529	-				+0.5
3,224,529	-				-2.1
3,224,529	-				-1.3
3,224,529	-				-0.8
3,224,529	-				-0.7
3,224,532	+				-0.7
3,224,532	+				-1.0
3,224,532	+				-1.5
3,224,532	+				+0.3
3,224,533	-				-1.8
3,224,533	-				-1.0
3,224,533	-				-2.3
3,224,533	-				-2.0
3,224,565	+				-1.7
3,224,565	+				+0.3
3,224,565	+				-0.7
3,224,565	+				-1.5
3,224,566	-				-0.3
3,224,566	-				-1.3
3,224,566	-				-0.5
3,224,566	-				+0.3
3,224,677	+		Pf1N1B4_2878	0.11	+0.3
3,224,733	+		Pf1N1B4_2878	0.14	+0.0
3,224,733	+		Pf1N1B4_2878	0.14	-1.6
3,224,733	+		Pf1N1B4_2878	0.14	+0.2
3,224,734	-		Pf1N1B4_2878	0.14	-3.9
3,224,734	-		Pf1N1B4_2878	0.14	-1.3
3,224,734	-		Pf1N1B4_2878	0.14	-0.7
3,224,734	-		Pf1N1B4_2878	0.14	-1.0
3,224,734	-		Pf1N1B4_2878	0.14	-2.4
3,224,734	-		Pf1N1B4_2878	0.14	-1.7
3,224,778	-		Pf1N1B4_2878	0.17	-0.7
3,224,788	+		Pf1N1B4_2878	0.18	-1.8
3,224,788	+		Pf1N1B4_2878	0.18	-1.0
3,224,789	-		Pf1N1B4_2878	0.18	-2.1
3,224,904	+		Pf1N1B4_2878	0.24	-2.6
3,224,905	-		Pf1N1B4_2878	0.24	-1.0
3,224,905	-		Pf1N1B4_2878	0.24	-0.3
3,224,905	-		Pf1N1B4_2878	0.24	-2.3
3,224,905	-		Pf1N1B4_2878	0.24	-2.1
3,224,905	-		Pf1N1B4_2878	0.24	-0.1
3,224,905	-		Pf1N1B4_2878	0.24	-1.3
3,224,985	+				-0.3
3,224,986	-		Pf1N1B4_2878	0.29	-0.7
3,224,986	-		Pf1N1B4_2878	0.29	-0.7
3,224,986	-		Pf1N1B4_2878	0.29	-1.3
3,224,986	-		Pf1N1B4_2878	0.29	-1.0
3,225,018	+		Pf1N1B4_2878	0.31	-2.4
3,225,018	+		Pf1N1B4_2878	0.31	-2.1
3,225,018	+		Pf1N1B4_2878	0.31	-0.3
3,225,018	+		Pf1N1B4_2878	0.31	-1.5
3,225,019	-		Pf1N1B4_2878	0.31	-1.8
3,225,019	-		Pf1N1B4_2878	0.31	-1.3