Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00595

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00590 and MMJJ_RS00595 are separated by 13 nucleotidesMMJJ_RS00595 and MMJJ_RS00600 are separated by 89 nucleotides MMJJ_RS00590: MMJJ_RS00590 - class I SAM-dependent methyltransferase, at 111,367 to 112,227 _RS00590 MMJJ_RS00595: MMJJ_RS00595 - tetratricopeptide repeat protein, at 112,241 to 113,956 _RS00595 MMJJ_RS00600: MMJJ_RS00600 - hydroxymethylbilane synthase, at 114,046 to 114,960 _RS00600 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 111.268 kb on + strandat 111.325 kb on + strandat 111.339 kb on + strandat 111.482 kb on - strand, within MMJJ_RS00590at 111.486 kb on + strand, within MMJJ_RS00590at 111.513 kb on - strand, within MMJJ_RS00590at 111.517 kb on + strand, within MMJJ_RS00590at 111.524 kb on + strand, within MMJJ_RS00590at 111.564 kb on + strand, within MMJJ_RS00590at 111.592 kb on - strand, within MMJJ_RS00590at 111.593 kb on + strand, within MMJJ_RS00590at 111.627 kb on - strand, within MMJJ_RS00590at 111.628 kb on + strand, within MMJJ_RS00590at 111.635 kb on - strand, within MMJJ_RS00590at 111.636 kb on + strand, within MMJJ_RS00590at 111.636 kb on + strand, within MMJJ_RS00590at 111.661 kb on + strand, within MMJJ_RS00590at 111.665 kb on - strand, within MMJJ_RS00590at 111.701 kb on - strand, within MMJJ_RS00590at 111.701 kb on - strand, within MMJJ_RS00590at 111.702 kb on + strand, within MMJJ_RS00590at 111.702 kb on + strand, within MMJJ_RS00590at 111.702 kb on + strand, within MMJJ_RS00590at 111.702 kb on + strand, within MMJJ_RS00590at 111.705 kb on - strand, within MMJJ_RS00590at 111.705 kb on - strand, within MMJJ_RS00590at 111.705 kb on - strand, within MMJJ_RS00590at 111.705 kb on - strand, within MMJJ_RS00590at 111.705 kb on - strand, within MMJJ_RS00590at 111.706 kb on + strand, within MMJJ_RS00590at 111.706 kb on + strand, within MMJJ_RS00590at 111.706 kb on + strand, within MMJJ_RS00590at 111.706 kb on + strand, within MMJJ_RS00590at 111.707 kb on - strand, within MMJJ_RS00590at 111.707 kb on - strand, within MMJJ_RS00590at 111.708 kb on + strand, within MMJJ_RS00590at 111.738 kb on + strand, within MMJJ_RS00590at 111.747 kb on - strand, within MMJJ_RS00590at 111.748 kb on + strand, within MMJJ_RS00590at 111.751 kb on + strand, within MMJJ_RS00590at 111.751 kb on + strand, within MMJJ_RS00590at 111.764 kb on - strandat 111.788 kb on - strand, within MMJJ_RS00590at 111.789 kb on + strand, within MMJJ_RS00590at 111.789 kb on + strand, within MMJJ_RS00590at 111.789 kb on + strand, within MMJJ_RS00590at 111.823 kb on + strand, within MMJJ_RS00590at 111.826 kb on - strand, within MMJJ_RS00590at 111.846 kb on - strand, within MMJJ_RS00590at 111.847 kb on + strand, within MMJJ_RS00590at 111.847 kb on + strand, within MMJJ_RS00590at 111.884 kb on - strand, within MMJJ_RS00590at 111.884 kb on - strand, within MMJJ_RS00590at 111.884 kb on - strand, within MMJJ_RS00590at 111.884 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.886 kb on - strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.887 kb on + strand, within MMJJ_RS00590at 111.888 kb on - strand, within MMJJ_RS00590at 111.888 kb on - strand, within MMJJ_RS00590at 111.888 kb on - strand, within MMJJ_RS00590at 111.889 kb on + strand, within MMJJ_RS00590at 111.912 kb on + strand, within MMJJ_RS00590at 111.937 kb on - strand, within MMJJ_RS00590at 111.938 kb on + strand, within MMJJ_RS00590at 111.949 kb on - strand, within MMJJ_RS00590at 111.950 kb on + strand, within MMJJ_RS00590at 111.950 kb on + strand, within MMJJ_RS00590at 111.961 kb on - strand, within MMJJ_RS00590at 111.963 kb on - strand, within MMJJ_RS00590at 111.964 kb on + strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.968 kb on - strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.969 kb on + strand, within MMJJ_RS00590at 111.971 kb on - strand, within MMJJ_RS00590at 111.971 kb on - strand, within MMJJ_RS00590at 111.971 kb on - strand, within MMJJ_RS00590at 111.972 kb on + strand, within MMJJ_RS00590at 111.974 kb on + strand, within MMJJ_RS00590at 111.986 kb on - strand, within MMJJ_RS00590at 111.986 kb on - strand, within MMJJ_RS00590at 111.987 kb on + strand, within MMJJ_RS00590at 111.987 kb on + strand, within MMJJ_RS00590at 111.987 kb on + strand, within MMJJ_RS00590at 111.988 kb on - strand, within MMJJ_RS00590at 111.988 kb on - strand, within MMJJ_RS00590at 111.988 kb on - strand, within MMJJ_RS00590at 111.988 kb on - strand, within MMJJ_RS00590at 111.988 kb on - strand, within MMJJ_RS00590at 111.989 kb on + strand, within MMJJ_RS00590at 111.989 kb on + strand, within MMJJ_RS00590at 111.989 kb on + strand, within MMJJ_RS00590at 112.023 kb on + strand, within MMJJ_RS00590at 112.069 kb on + strand, within MMJJ_RS00590at 112.092 kb on + strand, within MMJJ_RS00590at 112.101 kb on - strand, within MMJJ_RS00590at 112.131 kb on + strand, within MMJJ_RS00590at 112.222 kb on + strandat 112.230 kb on - strandat 112.239 kb on + strandat 112.278 kb on + strandat 112.279 kb on - strandat 112.280 kb on + strandat 112.290 kb on + strandat 112.325 kb on + strandat 112.328 kb on - strandat 112.334 kb on + strandat 112.387 kb on + strandat 112.387 kb on + strandat 112.402 kb on - strandat 112.403 kb on + strandat 112.403 kb on + strandat 112.405 kb on + strandat 112.406 kb on - strandat 112.406 kb on - strandat 112.407 kb on + strandat 112.407 kb on + strandat 112.407 kb on + strandat 112.407 kb on + strandat 112.450 kb on + strand, within MMJJ_RS00595at 112.450 kb on + strand, within MMJJ_RS00595at 112.471 kb on + strand, within MMJJ_RS00595at 112.507 kb on - strand, within MMJJ_RS00595at 112.532 kb on - strand, within MMJJ_RS00595at 112.532 kb on - strand, within MMJJ_RS00595at 112.532 kb on - strand, within MMJJ_RS00595at 112.585 kb on + strand, within MMJJ_RS00595at 112.689 kb on - strand, within MMJJ_RS00595at 112.696 kb on - strand, within MMJJ_RS00595at 112.712 kb on - strand, within MMJJ_RS00595at 112.749 kb on - strand, within MMJJ_RS00595at 112.867 kb on - strand, within MMJJ_RS00595at 112.868 kb on + strand, within MMJJ_RS00595at 112.896 kb on + strand, within MMJJ_RS00595at 112.896 kb on + strand, within MMJJ_RS00595at 112.896 kb on + strand, within MMJJ_RS00595at 112.908 kb on + strand, within MMJJ_RS00595at 113.006 kb on + strand, within MMJJ_RS00595at 113.029 kb on - strand, within MMJJ_RS00595at 113.030 kb on + strand, within MMJJ_RS00595at 113.092 kb on - strand, within MMJJ_RS00595at 113.173 kb on - strand, within MMJJ_RS00595at 113.174 kb on + strand, within MMJJ_RS00595at 113.355 kb on + strand, within MMJJ_RS00595at 113.355 kb on + strand, within MMJJ_RS00595at 113.364 kb on - strand, within MMJJ_RS00595at 113.425 kb on - strand, within MMJJ_RS00595at 113.431 kb on - strand, within MMJJ_RS00595at 113.517 kb on - strand, within MMJJ_RS00595at 113.517 kb on - strand, within MMJJ_RS00595at 113.518 kb on + strand, within MMJJ_RS00595at 113.519 kb on - strand, within MMJJ_RS00595at 113.520 kb on + strand, within MMJJ_RS00595at 113.520 kb on + strand, within MMJJ_RS00595at 113.534 kb on + strand, within MMJJ_RS00595at 113.700 kb on + strand, within MMJJ_RS00595at 113.703 kb on - strand, within MMJJ_RS00595at 113.704 kb on + strand, within MMJJ_RS00595at 113.738 kb on - strand, within MMJJ_RS00595at 113.768 kb on + strand, within MMJJ_RS00595at 113.784 kb on - strand, within MMJJ_RS00595at 113.784 kb on - strand, within MMJJ_RS00595at 113.784 kb on - strand, within MMJJ_RS00595at 113.784 kb on - strand, within MMJJ_RS00595at 113.784 kb on - strand, within MMJJ_RS00595at 113.921 kb on + strandat 113.921 kb on + strandat 113.921 kb on + strandat 113.946 kb on - strandat 113.980 kb on - strandat 113.981 kb on + strandat 113.981 kb on + strandat 113.998 kb on - strandat 114.047 kb on - strandat 114.048 kb on + strandat 114.048 kb on + strandat 114.050 kb on - strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.309 kb on + strand, within MMJJ_RS00600at 114.309 kb on + strand, within MMJJ_RS00600at 114.539 kb on + strand, within MMJJ_RS00600at 114.610 kb on - strand, within MMJJ_RS00600at 114.611 kb on + strand, within MMJJ_RS00600at 114.863 kb on + strand, within MMJJ_RS00600

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE
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111,268 + -0.0
111,325 + -1.3
111,339 + +0.4
111,482 - MMJJ_RS00590 0.13 -1.5
111,486 + MMJJ_RS00590 0.14 -0.5
111,513 - MMJJ_RS00590 0.17 +1.3
111,517 + MMJJ_RS00590 0.17 -0.7
111,524 + MMJJ_RS00590 0.18 +0.2
111,564 + MMJJ_RS00590 0.23 -0.7
111,592 - MMJJ_RS00590 0.26 -0.1
111,593 + MMJJ_RS00590 0.26 -1.1
111,627 - MMJJ_RS00590 0.30 +1.5
111,628 + MMJJ_RS00590 0.30 -1.3
111,635 - MMJJ_RS00590 0.31 -0.8
111,636 + MMJJ_RS00590 0.31 -0.6
111,636 + MMJJ_RS00590 0.31 +0.1
111,661 + MMJJ_RS00590 0.34 -1.7
111,665 - MMJJ_RS00590 0.35 -1.7
111,701 - MMJJ_RS00590 0.39 -0.9
111,701 - MMJJ_RS00590 0.39 -1.4
111,702 + MMJJ_RS00590 0.39 -1.7
111,702 + MMJJ_RS00590 0.39 +1.0
111,702 + MMJJ_RS00590 0.39 +0.4
111,702 + MMJJ_RS00590 0.39 -0.4
111,705 - MMJJ_RS00590 0.39 +4.0
111,705 - MMJJ_RS00590 0.39 +2.2
111,705 - MMJJ_RS00590 0.39 -0.2
111,705 - MMJJ_RS00590 0.39 -2.7
111,705 - MMJJ_RS00590 0.39 -0.9
111,706 + MMJJ_RS00590 0.39 -1.7
111,706 + MMJJ_RS00590 0.39 +0.4
111,706 + MMJJ_RS00590 0.39 -1.7
111,706 + MMJJ_RS00590 0.39 +0.6
111,707 - MMJJ_RS00590 0.39 +0.3
111,707 - MMJJ_RS00590 0.39 +0.8
111,708 + MMJJ_RS00590 0.40 +1.5
111,738 + MMJJ_RS00590 0.43 -1.3
111,747 - MMJJ_RS00590 0.44 +0.5
111,748 + MMJJ_RS00590 0.44 -0.2
111,751 + MMJJ_RS00590 0.45 +0.2
111,751 + MMJJ_RS00590 0.45 +1.9
111,764 - -1.7
111,788 - MMJJ_RS00590 0.49 +0.9
111,789 + MMJJ_RS00590 0.49 -0.7
111,789 + MMJJ_RS00590 0.49 +0.1
111,789 + MMJJ_RS00590 0.49 -0.4
111,823 + MMJJ_RS00590 0.53 -0.3
111,826 - MMJJ_RS00590 0.53 -0.7
111,846 - MMJJ_RS00590 0.56 +0.6
111,847 + MMJJ_RS00590 0.56 -2.6
111,847 + MMJJ_RS00590 0.56 -0.6
111,884 - MMJJ_RS00590 0.60 -0.2
111,884 - MMJJ_RS00590 0.60 +1.0
111,884 - MMJJ_RS00590 0.60 -1.8
111,884 - MMJJ_RS00590 0.60 +0.7
111,886 - MMJJ_RS00590 0.60 +0.6
111,886 - MMJJ_RS00590 0.60 +1.5
111,886 - MMJJ_RS00590 0.60 +0.5
111,886 - MMJJ_RS00590 0.60 -1.1
111,886 - MMJJ_RS00590 0.60 -1.7
111,886 - MMJJ_RS00590 0.60 -1.5
111,886 - MMJJ_RS00590 0.60 -1.4
111,887 + MMJJ_RS00590 0.60 +0.9
111,887 + MMJJ_RS00590 0.60 -1.5
111,887 + MMJJ_RS00590 0.60 -0.8
111,887 + MMJJ_RS00590 0.60 +1.5
111,887 + MMJJ_RS00590 0.60 +0.1
111,887 + MMJJ_RS00590 0.60 -1.6
111,887 + MMJJ_RS00590 0.60 -0.1
111,887 + MMJJ_RS00590 0.60 +0.9
111,888 - MMJJ_RS00590 0.61 +0.5
111,888 - MMJJ_RS00590 0.61 -1.6
111,888 - MMJJ_RS00590 0.61 -0.4
111,889 + MMJJ_RS00590 0.61 -1.7
111,912 + MMJJ_RS00590 0.63 +0.4
111,937 - MMJJ_RS00590 0.66 -1.3
111,938 + MMJJ_RS00590 0.66 -1.3
111,949 - MMJJ_RS00590 0.68 -1.2
111,950 + MMJJ_RS00590 0.68 +1.1
111,950 + MMJJ_RS00590 0.68 +0.7
111,961 - MMJJ_RS00590 0.69 -2.0
111,963 - MMJJ_RS00590 0.69 +2.3
111,964 + MMJJ_RS00590 0.69 -1.5
111,968 - MMJJ_RS00590 0.70 +1.1
111,968 - MMJJ_RS00590 0.70 -2.5
111,968 - MMJJ_RS00590 0.70 +1.5
111,968 - MMJJ_RS00590 0.70 +2.2
111,968 - MMJJ_RS00590 0.70 -1.5
111,968 - MMJJ_RS00590 0.70 -2.5
111,968 - MMJJ_RS00590 0.70 +1.6
111,968 - MMJJ_RS00590 0.70 +0.2
111,968 - MMJJ_RS00590 0.70 -2.2
111,968 - MMJJ_RS00590 0.70 -1.8
111,969 + MMJJ_RS00590 0.70 +1.3
111,969 + MMJJ_RS00590 0.70 +0.2
111,969 + MMJJ_RS00590 0.70 +1.1
111,969 + MMJJ_RS00590 0.70 +1.4
111,969 + MMJJ_RS00590 0.70 -0.7
111,969 + MMJJ_RS00590 0.70 -1.1
111,969 + MMJJ_RS00590 0.70 -0.6
111,969 + MMJJ_RS00590 0.70 -1.7
111,971 - MMJJ_RS00590 0.70 -1.3
111,971 - MMJJ_RS00590 0.70 +1.8
111,971 - MMJJ_RS00590 0.70 -0.7
111,972 + MMJJ_RS00590 0.70 -0.3
111,974 + MMJJ_RS00590 0.70 -1.6
111,986 - MMJJ_RS00590 0.72 +1.7
111,986 - MMJJ_RS00590 0.72 -0.6
111,987 + MMJJ_RS00590 0.72 +0.4
111,987 + MMJJ_RS00590 0.72 -1.4
111,987 + MMJJ_RS00590 0.72 -1.3
111,988 - MMJJ_RS00590 0.72 -0.2
111,988 - MMJJ_RS00590 0.72 -1.1
111,988 - MMJJ_RS00590 0.72 -1.2
111,988 - MMJJ_RS00590 0.72 -0.1
111,988 - MMJJ_RS00590 0.72 +1.3
111,989 + MMJJ_RS00590 0.72 -2.5
111,989 + MMJJ_RS00590 0.72 -2.0
111,989 + MMJJ_RS00590 0.72 -1.4
112,023 + MMJJ_RS00590 0.76 -0.1
112,069 + MMJJ_RS00590 0.82 -1.2
112,092 + MMJJ_RS00590 0.84 -2.8
112,101 - MMJJ_RS00590 0.85 +2.1
112,131 + MMJJ_RS00590 0.89 +0.6
112,222 + -2.5
112,230 - +1.6
112,239 + -1.1
112,278 + -2.2
112,279 - -0.1
112,280 + +1.9
112,290 + -0.8
112,325 + -3.0
112,328 - +1.2
112,334 + -1.6
112,387 + -1.9
112,387 + -1.7
112,402 - -1.9
112,403 + -1.8
112,403 + +0.8
112,405 + -2.5
112,406 - +0.8
112,406 - +1.3
112,407 + +1.2
112,407 + -0.2
112,407 + -1.7
112,407 + +0.7
112,450 + MMJJ_RS00595 0.12 -0.2
112,450 + MMJJ_RS00595 0.12 -1.3
112,471 + MMJJ_RS00595 0.13 -1.6
112,507 - MMJJ_RS00595 0.16 +1.4
112,532 - MMJJ_RS00595 0.17 +0.8
112,532 - MMJJ_RS00595 0.17 -0.6
112,532 - MMJJ_RS00595 0.17 +1.2
112,585 + MMJJ_RS00595 0.20 -1.4
112,689 - MMJJ_RS00595 0.26 +0.1
112,696 - MMJJ_RS00595 0.27 +0.8
112,712 - MMJJ_RS00595 0.27 +0.3
112,749 - MMJJ_RS00595 0.30 +2.9
112,867 - MMJJ_RS00595 0.36 -1.0
112,868 + MMJJ_RS00595 0.37 -0.9
112,896 + MMJJ_RS00595 0.38 -0.4
112,896 + MMJJ_RS00595 0.38 +1.3
112,896 + MMJJ_RS00595 0.38 -1.9
112,908 + MMJJ_RS00595 0.39 -1.8
113,006 + MMJJ_RS00595 0.45 +0.2
113,029 - MMJJ_RS00595 0.46 -0.3
113,030 + MMJJ_RS00595 0.46 -0.3
113,092 - MMJJ_RS00595 0.50 -0.2
113,173 - MMJJ_RS00595 0.54 -1.5
113,174 + MMJJ_RS00595 0.54 -2.2
113,355 + MMJJ_RS00595 0.65 -1.1
113,355 + MMJJ_RS00595 0.65 +1.2
113,364 - MMJJ_RS00595 0.65 +0.3
113,425 - MMJJ_RS00595 0.69 +0.8
113,431 - MMJJ_RS00595 0.69 +1.5
113,517 - MMJJ_RS00595 0.74 +0.1
113,517 - MMJJ_RS00595 0.74 -1.4
113,518 + MMJJ_RS00595 0.74 -2.2
113,519 - MMJJ_RS00595 0.74 -0.8
113,520 + MMJJ_RS00595 0.75 -2.2
113,520 + MMJJ_RS00595 0.75 +0.2
113,534 + MMJJ_RS00595 0.75 -1.3
113,700 + MMJJ_RS00595 0.85 -1.5
113,703 - MMJJ_RS00595 0.85 +0.6
113,704 + MMJJ_RS00595 0.85 -1.8
113,738 - MMJJ_RS00595 0.87 -1.6
113,768 + MMJJ_RS00595 0.89 +0.5
113,784 - MMJJ_RS00595 0.90 -0.2
113,784 - MMJJ_RS00595 0.90 +0.9
113,784 - MMJJ_RS00595 0.90 +0.2
113,784 - MMJJ_RS00595 0.90 +1.5
113,784 - MMJJ_RS00595 0.90 -1.3
113,921 + +1.0
113,921 + -0.4
113,921 + -3.2
113,946 - -1.2
113,980 - -0.6
113,981 + +1.9
113,981 + +2.0
113,998 - +0.3
114,047 - +0.1
114,048 + -0.6
114,048 + +0.7
114,050 - -1.6
114,051 + +1.7
114,051 + +1.2
114,309 + MMJJ_RS00600 0.29 -0.2
114,309 + MMJJ_RS00600 0.29 -0.2
114,539 + MMJJ_RS00600 0.54 -3.2
114,610 - MMJJ_RS00600 0.62 -3.2
114,611 + MMJJ_RS00600 0.62 -0.6
114,863 + MMJJ_RS00600 0.89 -1.7

Or see this region's nucleotide sequence