Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10540

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,328,080	+		LRK54_RS10535	0.57	+1.6
2,328,080	+		LRK54_RS10535	0.57	+0.3
2,328,080	+		LRK54_RS10535	0.57	-0.9
2,328,080	+		LRK54_RS10535	0.57	-0.7
2,328,081	-		LRK54_RS10535	0.57	-0.4
2,328,081	-		LRK54_RS10535	0.57	+0.4
2,328,081	-		LRK54_RS10535	0.57	+0.4
2,328,081	-		LRK54_RS10535	0.57	-0.2
2,328,149	+		LRK54_RS10535	0.61	+0.0
2,328,149	+		LRK54_RS10535	0.61	+0.1
2,328,149	+		LRK54_RS10535	0.61	+1.0
2,329,072	-		LRK54_RS10540	0.49	+0.4
2,329,072	-		LRK54_RS10540	0.49	-0.4
2,329,107	+		LRK54_RS10540	0.58	-0.0
2,329,107	+		LRK54_RS10540	0.58	+0.1
2,329,107	+		LRK54_RS10540	0.58	-0.1
2,329,108	-		LRK54_RS10540	0.58	+1.2
2,329,108	-		LRK54_RS10540	0.58	+1.3
2,329,108	-		LRK54_RS10540	0.58	+0.6
2,329,326	+				+1.0
2,329,415	+				+0.5
2,329,415	+				-0.4
2,329,415	+				-0.3
2,329,415	+				-1.1
2,329,415	+				+0.7
2,329,415	+				+0.9
2,329,415	+				+1.4
2,329,415	+				-0.1
2,329,415	+				-0.9
2,329,415	+				-0.2
2,329,416	-				-1.2
2,329,416	-				-0.6
2,329,416	-				-0.0
2,329,416	-				+0.9
2,329,416	-				-0.3
2,329,416	-				+1.8
2,329,416	-				+0.3
2,329,450	-				+0.6
2,329,450	-				-1.2
2,329,450	-				-0.3
2,329,450	-				+0.3
2,329,450	-				-0.1
2,329,500	+				-0.3
2,329,500	+				-0.9
2,329,500	+				+2.0
2,329,500	+				+0.4
2,329,500	+				+0.7
2,329,501	-				-0.6
2,329,501	-				-1.4
2,329,501	-				-0.3
2,329,501	-				+0.5
2,329,501	-				+0.3
2,329,501	-				+2.6
2,329,501	-				-0.3
2,329,515	+				+0.3
2,329,515	+				+0.3
2,329,515	+				+0.3
2,329,539	+				-0.1
2,329,539	+				-1.2
2,329,539	+				+1.3
2,329,539	+				+1.0
2,329,539	+				-0.8
2,329,539	+				-0.7
2,329,540	-				-0.1
2,329,540	-				+0.0
2,329,540	-				-0.8
2,329,540	-				-0.6
2,329,540	-				+0.6
2,329,540	-				+0.4
2,329,540	-				-0.1
2,329,540	-				+2.0
2,329,540	-				-0.5
2,329,540	-				-2.1
2,329,540	-				+0.6
2,329,540	-				+0.1
2,329,540	-				+0.9
2,329,567	+				+0.5
2,329,567	+				-0.8
2,329,567	+				+0.5
2,329,567	+				-0.6
2,329,567	+				-0.1
2,329,567	+				+0.2
2,329,567	+				-1.5
2,329,567	+				-0.6
2,329,567	+				+0.7
2,329,567	+				+0.5
2,329,567	+				-0.1
2,329,567	+				-0.9
2,329,568	-				+0.0
2,329,568	-				-1.4
2,329,568	-				+0.4
2,329,568	-				+0.4
2,329,568	-				-0.4
2,329,568	-				+0.0
2,329,568	-				+0.3
2,329,568	-				-0.4
2,329,568	-				+0.6
2,329,568	-				-0.5
2,329,568	-				+0.9
2,329,568	-				+0.0
2,329,569	+				-0.3
2,329,569	+				+0.3
2,329,569	+				-0.0
2,329,569	+				-0.3
2,329,569	+				-0.0
2,329,569	+				-0.4
2,329,569	+				-0.2
2,329,569	+				+0.3
2,329,569	+				+0.0
2,329,569	+				+1.0
2,329,569	+				+0.3
2,329,569	+				-0.6
2,329,569	+				+0.1
2,329,569	+				-0.3
2,329,569	+				-0.8
2,329,569	+				-0.7
2,329,569	+				+0.4
2,329,569	+				-1.0
2,329,569	+				+0.8
2,329,569	+				+0.2
2,329,570	-				+0.8
2,329,570	-				+0.1
2,329,570	-				+0.2
2,329,570	-				+0.8
2,329,570	-				-0.2
2,329,570	-				+0.3
2,329,570	-				-0.4
2,329,575	+				+1.4
2,329,575	+				+0.6
2,329,575	+				-1.3
2,329,575	+				-1.5
2,329,575	+				-0.4
2,329,575	+				-0.0
2,329,575	+				-0.4
2,329,575	+				-0.1
2,329,575	+				+0.4
2,329,575	+				-0.1
2,329,575	+				+0.7
2,329,575	+				+0.8
2,329,576	-				-1.1
2,329,576	-				+0.1
2,329,576	-				+0.5
2,329,576	-				+0.4
2,329,602	+				+0.6
2,329,603	-				+0.6
2,329,626	+				+0.4
2,329,626	+				-0.6
2,329,626	+				+0.3
2,329,626	+				+0.3
2,329,626	+				-0.1
2,329,626	+				+0.5
2,329,627	-				+1.6
2,329,627	-				+0.3
2,329,627	-				+0.1
2,329,627	-				-0.9
2,329,627	-				+0.3
2,329,683	+				+0.0
2,329,683	+				+0.0
2,329,683	+				+0.1
2,329,683	+				-1.1
2,329,683	+				-0.9
2,329,683	+				+0.4
2,329,683	+				-0.2
2,329,683	+				+0.6
2,329,683	+				+0.4
2,329,683	+				+0.1
2,329,683	+				+0.2
2,329,683	+				-0.1
2,329,683	+				+0.6
2,329,683	+				+0.1
2,329,683	+				-0.2
2,329,684	-				+0.5
2,329,684	-				-1.5
2,329,684	-				+0.2
2,329,684	-				-1.0
2,329,684	-				+0.2
2,329,684	-				-0.6
2,329,684	-				+0.5
2,329,684	-				+0.2
2,329,684	-				+0.4
2,329,684	-				+0.5
2,329,684	-				-0.1
2,329,684	-				-0.3
2,329,684	-				-1.0
2,329,684	-				+0.2
2,329,684	-				+0.0
2,329,684	-				-0.7
2,329,821	+		LRK54_RS10545	0.12	+0.5
2,329,821	+		LRK54_RS10545	0.12	+0.4
2,329,822	-		LRK54_RS10545	0.12	-0.2
2,329,822	-		LRK54_RS10545	0.12	-0.1
2,329,822	-		LRK54_RS10545	0.12	+0.1
2,329,822	-		LRK54_RS10545	0.12	+0.1
2,329,822	-		LRK54_RS10545	0.12	+0.1
2,329,822	-		LRK54_RS10545	0.12	+0.6
2,329,884	+		LRK54_RS10545	0.14	-0.9
2,329,884	+		LRK54_RS10545	0.14	+0.8
2,329,917	+		LRK54_RS10545	0.15	-1.7
2,329,917	+		LRK54_RS10545	0.15	-0.0
2,329,917	+		LRK54_RS10545	0.15	+0.2
2,329,917	+		LRK54_RS10545	0.15	+0.2
2,329,918	-		LRK54_RS10545	0.15	+1.0
2,329,918	-		LRK54_RS10545	0.15	-0.7
2,329,918	-		LRK54_RS10545	0.15	-0.6
2,329,918	-		LRK54_RS10545	0.15	+0.3
2,329,918	-		LRK54_RS10545	0.15	+1.6
2,329,918	-		LRK54_RS10545	0.15	-0.0
2,329,918	-		LRK54_RS10545	0.15	+0.4
2,329,977	+		LRK54_RS10545	0.17	+0.2
2,329,977	+		LRK54_RS10545	0.17	-0.4
2,329,977	+		LRK54_RS10545	0.17	+0.4
2,329,977	+		LRK54_RS10545	0.17	-0.3
2,329,977	+		LRK54_RS10545	0.17	+0.1
2,329,977	+		LRK54_RS10545	0.17	+1.2
2,329,978	-		LRK54_RS10545	0.17	-0.6
2,329,978	-		LRK54_RS10545	0.17	+0.2
2,329,978	-		LRK54_RS10545	0.17	+0.3
2,329,978	-		LRK54_RS10545	0.17	-1.4
2,329,978	-		LRK54_RS10545	0.17	-0.6
2,329,978	-		LRK54_RS10545	0.17	-0.6
2,329,978	-		LRK54_RS10545	0.17	+0.8
2,330,001	+		LRK54_RS10545	0.17	+0.3
2,330,001	+		LRK54_RS10545	0.17	+0.1
2,330,001	+		LRK54_RS10545	0.17	-0.1
2,330,001	+		LRK54_RS10545	0.17	-0.7
2,330,001	+		LRK54_RS10545	0.17	+0.5
2,330,001	+		LRK54_RS10545	0.17	+0.1
2,330,002	-		LRK54_RS10545	0.17	+1.1
2,330,002	-		LRK54_RS10545	0.17	+0.5
2,330,025	+		LRK54_RS10545	0.18	-0.1
2,330,025	+		LRK54_RS10545	0.18	+0.1
2,330,025	+		LRK54_RS10545	0.18	+0.1
2,330,026	-		LRK54_RS10545	0.18	-0.3
2,330,026	-		LRK54_RS10545	0.18	-0.3
2,330,026	-		LRK54_RS10545	0.18	-0.1
2,330,085	+		LRK54_RS10545	0.20	+0.7
2,330,085	+		LRK54_RS10545	0.20	+0.1
2,330,085	+		LRK54_RS10545	0.20	+0.8
2,330,085	+		LRK54_RS10545	0.20	-0.2
2,330,086	-		LRK54_RS10545	0.20	-0.3
2,330,086	-		LRK54_RS10545	0.20	+0.2
2,330,086	-		LRK54_RS10545	0.20	-0.2
2,330,086	-		LRK54_RS10545	0.20	+0.9
2,330,086	-		LRK54_RS10545	0.20	+0.9
2,330,086	-		LRK54_RS10545	0.20	+0.7
2,330,086	-		LRK54_RS10545	0.20	-0.2
2,330,086	-		LRK54_RS10545	0.20	-1.2
2,330,086	-		LRK54_RS10545	0.20	-0.1
2,330,086	-		LRK54_RS10545	0.20	+0.4
2,330,086	-		LRK54_RS10545	0.20	-0.2
2,330,086	-		LRK54_RS10545	0.20	+0.5
2,330,148	+		LRK54_RS10545	0.22	+0.3
2,330,148	+		LRK54_RS10545	0.22	-0.2
2,330,148	+		LRK54_RS10545	0.22	+0.6
2,330,148	+		LRK54_RS10545	0.22	+0.1
2,330,149	-		LRK54_RS10545	0.22	-0.2
2,330,149	-		LRK54_RS10545	0.22	+1.6
2,330,149	-		LRK54_RS10545	0.22	-0.5