Experiment: NAG 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17545 and HMPREF1058_RS0119345 are separated by 6 nucleotides HMPREF1058_RS0119345 and HMPREF1058_RS17540 overlap by 59 nucleotides HMPREF1058_RS17540 and HMPREF1058_RS17535 are separated by 485 nucleotides
HMPREF1058_RS17545: HMPREF1058_RS17545 - hypothetical protein, at 402,201 to 402,674
_RS17545
HMPREF1058_RS0119345: HMPREF1058_RS0119345 - 6-bladed beta-propeller, at 402,681 to 403,445
_RS0119345
HMPREF1058_RS17540: HMPREF1058_RS17540 - 6-bladed beta-propeller, at 403,387 to 403,839
_RS17540
HMPREF1058_RS17535: HMPREF1058_RS17535 - IS21-like element helper ATPase IstB, at 404,325 to 405,113
_RS17535
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.412 kb on + strand, within HMPREF1058_RS17545 at 402.413 kb on - strand, within HMPREF1058_RS17545 at 402.421 kb on - strand, within HMPREF1058_RS17545 at 402.495 kb on - strand, within HMPREF1058_RS17545 at 402.495 kb on - strand, within HMPREF1058_RS17545 at 402.513 kb on - strand, within HMPREF1058_RS17545 at 402.548 kb on + strand, within HMPREF1058_RS17545 at 402.549 kb on - strand, within HMPREF1058_RS17545 at 402.552 kb on + strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.555 kb on - strand, within HMPREF1058_RS17545 at 402.581 kb on + strand, within HMPREF1058_RS17545 at 402.582 kb on - strand, within HMPREF1058_RS17545 at 402.650 kb on + strand at 402.663 kb on - strand at 402.689 kb on + strand at 402.693 kb on - strand at 402.736 kb on - strand at 402.801 kb on - strand, within HMPREF1058_RS0119345 at 402.801 kb on - strand, within HMPREF1058_RS0119345 at 402.838 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.846 kb on + strand, within HMPREF1058_RS0119345 at 402.900 kb on + strand, within HMPREF1058_RS0119345 at 402.910 kb on - strand, within HMPREF1058_RS0119345 at 402.910 kb on - strand at 402.923 kb on + strand, within HMPREF1058_RS0119345 at 402.923 kb on + strand, within HMPREF1058_RS0119345 at 402.954 kb on + strand, within HMPREF1058_RS0119345 at 402.966 kb on + strand, within HMPREF1058_RS0119345 at 402.967 kb on - strand, within HMPREF1058_RS0119345 at 403.078 kb on - strand, within HMPREF1058_RS0119345 at 403.123 kb on - strand, within HMPREF1058_RS0119345 at 403.123 kb on - strand, within HMPREF1058_RS0119345 at 403.142 kb on + strand, within HMPREF1058_RS0119345 at 403.143 kb on - strand, within HMPREF1058_RS0119345 at 403.152 kb on + strand, within HMPREF1058_RS0119345 at 403.154 kb on + strand, within HMPREF1058_RS0119345 at 403.155 kb on - strand, within HMPREF1058_RS0119345 at 403.204 kb on + strand, within HMPREF1058_RS0119345 at 403.205 kb on - strand, within HMPREF1058_RS0119345 at 403.209 kb on - strand, within HMPREF1058_RS0119345 at 403.226 kb on + strand, within HMPREF1058_RS0119345 at 403.227 kb on - strand, within HMPREF1058_RS0119345 at 403.227 kb on - strand, within HMPREF1058_RS0119345 at 403.227 kb on - strand, within HMPREF1058_RS0119345 at 403.227 kb on - strand, within HMPREF1058_RS0119345 at 403.228 kb on + strand, within HMPREF1058_RS0119345 at 403.297 kb on - strand, within HMPREF1058_RS0119345 at 403.316 kb on + strand, within HMPREF1058_RS0119345 at 403.370 kb on + strand at 403.380 kb on + strand at 403.381 kb on - strand at 403.388 kb on + strand at 403.391 kb on - strand at 403.419 kb on + strand at 403.422 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.425 kb on - strand at 403.426 kb on + strand at 403.427 kb on - strand at 403.427 kb on - strand at 403.428 kb on + strand at 403.429 kb on - strand at 403.429 kb on - strand at 403.429 kb on - strand at 403.430 kb on + strand at 403.431 kb on - strand at 403.464 kb on + strand, within HMPREF1058_RS17540 at 403.464 kb on + strand, within HMPREF1058_RS17540 at 403.466 kb on + strand, within HMPREF1058_RS17540 at 403.504 kb on + strand, within HMPREF1058_RS17540 at 403.550 kb on + strand, within HMPREF1058_RS17540 at 403.551 kb on - strand, within HMPREF1058_RS17540 at 403.703 kb on - strand, within HMPREF1058_RS17540 at 403.711 kb on + strand, within HMPREF1058_RS17540 at 403.712 kb on - strand, within HMPREF1058_RS17540 at 403.765 kb on - strand, within HMPREF1058_RS17540 at 403.767 kb on + strand, within HMPREF1058_RS17540 at 403.768 kb on - strand, within HMPREF1058_RS17540 at 403.770 kb on + strand, within HMPREF1058_RS17540 at 403.801 kb on + strand at 403.801 kb on + strand at 403.804 kb on - strand at 403.812 kb on - strand at 403.872 kb on + strand at 403.893 kb on + strand at 403.916 kb on - strand at 403.993 kb on - strand at 403.993 kb on - strand at 403.997 kb on - strand at 404.038 kb on + strand at 404.038 kb on + strand at 404.039 kb on - strand at 404.039 kb on - strand at 404.044 kb on - strand at 404.049 kb on + strand at 404.062 kb on - strand at 404.086 kb on - strand at 404.086 kb on - strand at 404.115 kb on - strand at 404.624 kb on + strand, within HMPREF1058_RS17535 at 404.631 kb on + strand, within HMPREF1058_RS17535
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 20 mM (C) remove 402,412 + HMPREF1058_RS17545 0.45 +0.1 402,413 - HMPREF1058_RS17545 0.45 -0.3 402,421 - HMPREF1058_RS17545 0.46 -0.6 402,495 - HMPREF1058_RS17545 0.62 +1.1 402,495 - HMPREF1058_RS17545 0.62 -0.8 402,513 - HMPREF1058_RS17545 0.66 -0.1 402,548 + HMPREF1058_RS17545 0.73 +0.0 402,549 - HMPREF1058_RS17545 0.73 -0.7 402,552 + HMPREF1058_RS17545 0.74 +0.4 402,553 - HMPREF1058_RS17545 0.74 -0.1 402,553 - HMPREF1058_RS17545 0.74 -0.4 402,553 - HMPREF1058_RS17545 0.74 +0.2 402,555 - HMPREF1058_RS17545 0.75 +0.2 402,581 + HMPREF1058_RS17545 0.80 +1.4 402,582 - HMPREF1058_RS17545 0.80 -0.6 402,650 + +0.4 402,663 - -1.7 402,689 + -0.7 402,693 - -0.5 402,736 - +0.3 402,801 - HMPREF1058_RS0119345 0.16 -0.1 402,801 - HMPREF1058_RS0119345 0.16 +0.4 402,838 - HMPREF1058_RS0119345 0.21 -1.3 402,845 - HMPREF1058_RS0119345 0.21 -0.2 402,845 - HMPREF1058_RS0119345 0.21 +0.4 402,845 - HMPREF1058_RS0119345 0.21 -0.4 402,846 + HMPREF1058_RS0119345 0.22 -0.1 402,900 + HMPREF1058_RS0119345 0.29 -0.7 402,910 - HMPREF1058_RS0119345 0.30 -0.6 402,910 - +1.0 402,923 + HMPREF1058_RS0119345 0.32 -0.2 402,923 + HMPREF1058_RS0119345 0.32 +0.2 402,954 + HMPREF1058_RS0119345 0.36 -0.0 402,966 + HMPREF1058_RS0119345 0.37 +0.3 402,967 - HMPREF1058_RS0119345 0.37 -1.1 403,078 - HMPREF1058_RS0119345 0.52 +0.4 403,123 - HMPREF1058_RS0119345 0.58 -0.3 403,123 - HMPREF1058_RS0119345 0.58 -0.7 403,142 + HMPREF1058_RS0119345 0.60 +0.9 403,143 - HMPREF1058_RS0119345 0.60 +0.4 403,152 + HMPREF1058_RS0119345 0.62 -0.7 403,154 + HMPREF1058_RS0119345 0.62 +0.5 403,155 - HMPREF1058_RS0119345 0.62 +0.5 403,204 + HMPREF1058_RS0119345 0.68 -0.5 403,205 - HMPREF1058_RS0119345 0.68 +0.1 403,209 - HMPREF1058_RS0119345 0.69 +0.2 403,226 + HMPREF1058_RS0119345 0.71 -2.5 403,227 - HMPREF1058_RS0119345 0.71 +0.5 403,227 - HMPREF1058_RS0119345 0.71 -1.2 403,227 - HMPREF1058_RS0119345 0.71 -0.4 403,227 - HMPREF1058_RS0119345 0.71 -0.8 403,228 + HMPREF1058_RS0119345 0.72 +0.8 403,297 - HMPREF1058_RS0119345 0.81 +0.1 403,316 + HMPREF1058_RS0119345 0.83 +0.3 403,370 + +0.3 403,380 + -1.3 403,381 - +0.4 403,388 + +1.6 403,391 - -0.2 403,419 + +0.4 403,422 + +0.2 403,424 + -0.5 403,424 + +0.0 403,424 + -0.0 403,425 - +0.3 403,426 + -0.2 403,427 - -1.9 403,427 - -0.1 403,428 + +0.4 403,429 - -0.6 403,429 - -0.4 403,429 - +0.3 403,430 + +1.0 403,431 - +2.0 403,464 + HMPREF1058_RS17540 0.17 +0.7 403,464 + HMPREF1058_RS17540 0.17 +0.5 403,466 + HMPREF1058_RS17540 0.17 +0.5 403,504 + HMPREF1058_RS17540 0.26 -0.7 403,550 + HMPREF1058_RS17540 0.36 +0.1 403,551 - HMPREF1058_RS17540 0.36 -0.7 403,703 - HMPREF1058_RS17540 0.70 -0.9 403,711 + HMPREF1058_RS17540 0.72 -0.2 403,712 - HMPREF1058_RS17540 0.72 +0.5 403,765 - HMPREF1058_RS17540 0.83 -0.2 403,767 + HMPREF1058_RS17540 0.84 +1.2 403,768 - HMPREF1058_RS17540 0.84 -1.2 403,770 + HMPREF1058_RS17540 0.85 +0.7 403,801 + -0.2 403,801 + -0.7 403,804 - +0.7 403,812 - -0.2 403,872 + -1.1 403,893 + -1.0 403,916 - +0.3 403,993 - +0.8 403,993 - -0.8 403,997 - -0.2 404,038 + -0.4 404,038 + -0.2 404,039 - +0.5 404,039 - +1.0 404,044 - +0.5 404,049 + +1.0 404,062 - -0.2 404,086 - +0.1 404,086 - -1.0 404,115 - +0.3 404,624 + HMPREF1058_RS17535 0.38 -2.3 404,631 + HMPREF1058_RS17535 0.39 -1.5
Or see this region's nucleotide sequence