Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02747 and CCNA_02748 are separated by 134 nucleotides CCNA_02748 and CCNA_02749 are separated by 3 nucleotides CCNA_02749 and CCNA_02750 are separated by 44 nucleotides CCNA_02750 and CCNA_02751 overlap by 4 nucleotides
CCNA_02747: CCNA_02747 - ABC transporter substrate-binding protein, at 2,909,315 to 2,910,127
_02747
CCNA_02748: CCNA_02748 - hypothetical protein, at 2,910,262 to 2,910,510
_02748
CCNA_02749: CCNA_02749 - hypothetical protein, at 2,910,514 to 2,910,963
_02749
CCNA_02750: CCNA_02750 - ABC transporter permease protein, at 2,911,008 to 2,911,682
_02750
CCNA_02751: CCNA_02751 - ABC transporter ATP-binding protein, at 2,911,679 to 2,912,677
_02751
Position (kb)
2911
2912 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2910.049 kb on - strand at 2910.059 kb on + strand at 2910.095 kb on + strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.117 kb on + strand at 2910.117 kb on + strand at 2910.117 kb on + strand at 2910.117 kb on + strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.161 kb on - strand at 2910.209 kb on + strand at 2910.231 kb on + strand at 2910.233 kb on - strand at 2910.286 kb on + strand at 2910.286 kb on + strand at 2910.291 kb on + strand, within CCNA_02748 at 2910.294 kb on - strand, within CCNA_02748 at 2910.299 kb on - strand, within CCNA_02748 at 2910.309 kb on + strand, within CCNA_02748 at 2910.318 kb on + strand, within CCNA_02748 at 2910.324 kb on - strand, within CCNA_02748 at 2910.324 kb on - strand, within CCNA_02748 at 2910.326 kb on - strand, within CCNA_02748 at 2910.326 kb on - strand, within CCNA_02748 at 2910.326 kb on - strand, within CCNA_02748 at 2910.366 kb on + strand, within CCNA_02748 at 2910.428 kb on + strand, within CCNA_02748 at 2910.428 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.504 kb on + strand at 2910.504 kb on + strand at 2910.504 kb on + strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.520 kb on - strand at 2910.600 kb on + strand, within CCNA_02749 at 2910.613 kb on + strand, within CCNA_02749 at 2910.640 kb on - strand, within CCNA_02749 at 2910.651 kb on + strand, within CCNA_02749 at 2910.651 kb on + strand, within CCNA_02749 at 2910.653 kb on + strand, within CCNA_02749 at 2910.653 kb on + strand, within CCNA_02749 at 2910.659 kb on - strand, within CCNA_02749 at 2910.659 kb on - strand, within CCNA_02749 at 2910.660 kb on - strand, within CCNA_02749 at 2910.661 kb on - strand, within CCNA_02749 at 2910.685 kb on + strand, within CCNA_02749 at 2910.728 kb on + strand, within CCNA_02749 at 2910.745 kb on + strand, within CCNA_02749 at 2910.792 kb on - strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.800 kb on - strand, within CCNA_02749 at 2910.802 kb on - strand, within CCNA_02749 at 2910.842 kb on + strand, within CCNA_02749 at 2910.844 kb on - strand, within CCNA_02749 at 2910.879 kb on + strand, within CCNA_02749 at 2910.887 kb on - strand, within CCNA_02749 at 2910.905 kb on + strand, within CCNA_02749 at 2910.927 kb on + strand at 2910.927 kb on + strand at 2910.938 kb on + strand at 2910.938 kb on + strand at 2910.945 kb on + strand at 2910.946 kb on - strand at 2910.946 kb on - strand at 2910.949 kb on - strand at 2910.949 kb on - strand at 2910.954 kb on - strand at 2910.962 kb on + strand at 2910.962 kb on + strand at 2910.965 kb on - strand at 2911.031 kb on + strand at 2911.042 kb on - strand at 2911.057 kb on + strand at 2911.113 kb on - strand, within CCNA_02750 at 2911.164 kb on - strand, within CCNA_02750 at 2911.178 kb on - strand, within CCNA_02750 at 2911.182 kb on + strand, within CCNA_02750 at 2911.201 kb on - strand, within CCNA_02750 at 2911.233 kb on - strand, within CCNA_02750 at 2911.250 kb on - strand, within CCNA_02750 at 2911.267 kb on - strand, within CCNA_02750 at 2911.395 kb on - strand, within CCNA_02750 at 2911.395 kb on - strand, within CCNA_02750 at 2911.416 kb on - strand, within CCNA_02750 at 2911.418 kb on + strand, within CCNA_02750 at 2911.426 kb on - strand, within CCNA_02750 at 2911.463 kb on + strand, within CCNA_02750 at 2911.477 kb on + strand, within CCNA_02750 at 2911.501 kb on + strand, within CCNA_02750 at 2911.501 kb on + strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.515 kb on + strand, within CCNA_02750 at 2911.524 kb on + strand, within CCNA_02750 at 2911.532 kb on - strand, within CCNA_02750 at 2911.558 kb on - strand, within CCNA_02750 at 2911.558 kb on - strand, within CCNA_02750 at 2911.558 kb on - strand, within CCNA_02750 at 2911.581 kb on + strand, within CCNA_02750 at 2911.584 kb on - strand, within CCNA_02750 at 2911.589 kb on + strand, within CCNA_02750 at 2911.589 kb on - strand, within CCNA_02750 at 2911.617 kb on + strand at 2911.622 kb on - strand at 2911.648 kb on - strand at 2911.662 kb on + strand at 2911.662 kb on + strand at 2911.662 kb on + strand at 2911.662 kb on + strand at 2911.670 kb on - strand at 2911.671 kb on - strand at 2911.725 kb on + strand at 2911.725 kb on + strand at 2911.725 kb on + strand at 2911.725 kb on + strand at 2911.733 kb on - strand at 2911.733 kb on - strand at 2911.738 kb on - strand at 2911.776 kb on - strand at 2911.784 kb on + strand, within CCNA_02751 at 2911.804 kb on + strand, within CCNA_02751 at 2911.804 kb on + strand, within CCNA_02751 at 2911.825 kb on + strand, within CCNA_02751 at 2911.872 kb on + strand, within CCNA_02751 at 2911.875 kb on - strand, within CCNA_02751 at 2911.996 kb on + strand, within CCNA_02751 at 2912.085 kb on - strand, within CCNA_02751 at 2912.113 kb on - strand, within CCNA_02751 at 2912.113 kb on - strand, within CCNA_02751 at 2912.118 kb on - strand, within CCNA_02751 at 2912.123 kb on + strand, within CCNA_02751 at 2912.123 kb on + strand, within CCNA_02751 at 2912.131 kb on - strand, within CCNA_02751 at 2912.142 kb on + strand, within CCNA_02751 at 2912.150 kb on - strand, within CCNA_02751 at 2912.155 kb on - strand, within CCNA_02751 at 2912.158 kb on - strand, within CCNA_02751 at 2912.193 kb on - strand, within CCNA_02751 at 2912.195 kb on + strand, within CCNA_02751 at 2912.203 kb on - strand, within CCNA_02751 at 2912.230 kb on - strand, within CCNA_02751 at 2912.236 kb on - strand, within CCNA_02751 at 2912.245 kb on + strand, within CCNA_02751 at 2912.253 kb on - strand, within CCNA_02751 at 2912.253 kb on - strand, within CCNA_02751 at 2912.253 kb on - strand, within CCNA_02751 at 2912.256 kb on + strand, within CCNA_02751 at 2912.268 kb on + strand, within CCNA_02751 at 2912.304 kb on + strand, within CCNA_02751 at 2912.312 kb on + strand, within CCNA_02751 at 2912.312 kb on - strand, within CCNA_02751 at 2912.312 kb on - strand, within CCNA_02751 at 2912.314 kb on + strand, within CCNA_02751 at 2912.314 kb on + strand, within CCNA_02751 at 2912.322 kb on - strand, within CCNA_02751 at 2912.322 kb on - strand, within CCNA_02751 at 2912.328 kb on + strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.359 kb on + strand, within CCNA_02751 at 2912.468 kb on - strand, within CCNA_02751 at 2912.470 kb on + strand, within CCNA_02751 at 2912.474 kb on + strand, within CCNA_02751 at 2912.478 kb on - strand, within CCNA_02751 at 2912.493 kb on + strand, within CCNA_02751 at 2912.498 kb on + strand, within CCNA_02751 at 2912.498 kb on + strand, within CCNA_02751 at 2912.511 kb on - strand, within CCNA_02751 at 2912.519 kb on + strand, within CCNA_02751 at 2912.519 kb on + strand, within CCNA_02751 at 2912.526 kb on + strand, within CCNA_02751 at 2912.543 kb on - strand, within CCNA_02751 at 2912.545 kb on + strand, within CCNA_02751 at 2912.545 kb on + strand, within CCNA_02751 at 2912.548 kb on - strand, within CCNA_02751 at 2912.553 kb on - strand, within CCNA_02751 at 2912.557 kb on - strand, within CCNA_02751 at 2912.614 kb on - strand at 2912.641 kb on - strand at 2912.651 kb on - strand at 2912.662 kb on + strand at 2912.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,910,049 - -0.6 2,910,059 + -0.8 2,910,095 + -2.3 2,910,103 - -0.9 2,910,103 - -1.1 2,910,103 - -0.5 2,910,103 - -1.0 2,910,103 - -0.7 2,910,103 - +1.5 2,910,117 + -0.4 2,910,117 + -1.8 2,910,117 + +0.9 2,910,117 + +0.5 2,910,125 - +0.2 2,910,125 - +0.6 2,910,125 - +0.4 2,910,125 - -0.5 2,910,125 - +0.0 2,910,125 - -0.7 2,910,125 - +0.1 2,910,125 - +0.0 2,910,125 - +0.2 2,910,161 - -0.3 2,910,209 + -1.0 2,910,231 + +1.6 2,910,233 - -1.5 2,910,286 + +0.9 2,910,286 + -0.4 2,910,291 + CCNA_02748 0.12 -1.8 2,910,294 - CCNA_02748 0.13 -0.1 2,910,299 - CCNA_02748 0.15 -0.0 2,910,309 + CCNA_02748 0.19 -0.2 2,910,318 + CCNA_02748 0.22 -0.7 2,910,324 - CCNA_02748 0.25 -0.3 2,910,324 - CCNA_02748 0.25 -1.4 2,910,326 - CCNA_02748 0.26 +0.7 2,910,326 - CCNA_02748 0.26 -0.5 2,910,326 - CCNA_02748 0.26 -1.3 2,910,366 + CCNA_02748 0.42 -1.0 2,910,428 + CCNA_02748 0.67 +3.1 2,910,428 + CCNA_02748 0.67 -1.0 2,910,468 + CCNA_02748 0.83 -1.5 2,910,468 + CCNA_02748 0.83 -1.3 2,910,468 + CCNA_02748 0.83 -0.8 2,910,468 + CCNA_02748 0.83 +0.3 2,910,476 - CCNA_02748 0.86 +2.1 2,910,476 - CCNA_02748 0.86 -2.4 2,910,476 - CCNA_02748 0.86 +0.0 2,910,476 - CCNA_02748 0.86 +1.3 2,910,504 + -0.1 2,910,504 + -0.5 2,910,504 + -0.8 2,910,512 - +1.2 2,910,512 - +1.0 2,910,512 - +0.6 2,910,512 - -0.5 2,910,512 - +1.6 2,910,512 - -0.5 2,910,520 - -0.1 2,910,600 + CCNA_02749 0.19 -0.6 2,910,613 + CCNA_02749 0.22 -1.4 2,910,640 - CCNA_02749 0.28 -1.4 2,910,651 + CCNA_02749 0.30 -0.5 2,910,651 + CCNA_02749 0.30 +0.1 2,910,653 + CCNA_02749 0.31 +0.3 2,910,653 + CCNA_02749 0.31 -0.1 2,910,659 - CCNA_02749 0.32 +1.2 2,910,659 - CCNA_02749 0.32 +2.1 2,910,660 - CCNA_02749 0.32 +0.7 2,910,661 - CCNA_02749 0.33 +0.6 2,910,685 + CCNA_02749 0.38 +0.0 2,910,728 + CCNA_02749 0.48 -0.5 2,910,745 + CCNA_02749 0.51 -0.1 2,910,792 - CCNA_02749 0.62 +0.6 2,910,794 + CCNA_02749 0.62 +0.4 2,910,794 + CCNA_02749 0.62 +0.9 2,910,794 + CCNA_02749 0.62 -0.1 2,910,794 + CCNA_02749 0.62 +0.4 2,910,800 - CCNA_02749 0.64 +0.5 2,910,802 - CCNA_02749 0.64 +0.3 2,910,842 + CCNA_02749 0.73 +0.2 2,910,844 - CCNA_02749 0.73 -0.9 2,910,879 + CCNA_02749 0.81 -2.2 2,910,887 - CCNA_02749 0.83 +1.0 2,910,905 + CCNA_02749 0.87 +0.9 2,910,927 + +1.6 2,910,927 + -0.3 2,910,938 + -1.8 2,910,938 + -1.2 2,910,945 + -2.2 2,910,946 - +0.5 2,910,946 - +2.0 2,910,949 - +0.3 2,910,949 - +1.4 2,910,954 - +0.6 2,910,962 + -0.2 2,910,962 + -0.2 2,910,965 - +1.4 2,911,031 + -1.7 2,911,042 - +1.4 2,911,057 + +1.3 2,911,113 - CCNA_02750 0.16 +1.0 2,911,164 - CCNA_02750 0.23 +1.2 2,911,178 - CCNA_02750 0.25 +0.7 2,911,182 + CCNA_02750 0.26 -1.3 2,911,201 - CCNA_02750 0.29 +1.8 2,911,233 - CCNA_02750 0.33 +1.5 2,911,250 - CCNA_02750 0.36 +1.5 2,911,267 - CCNA_02750 0.38 +1.6 2,911,395 - CCNA_02750 0.57 +1.4 2,911,395 - CCNA_02750 0.57 +2.5 2,911,416 - CCNA_02750 0.60 +1.3 2,911,418 + CCNA_02750 0.61 -1.6 2,911,426 - CCNA_02750 0.62 +1.5 2,911,463 + CCNA_02750 0.67 -0.0 2,911,477 + CCNA_02750 0.69 -0.8 2,911,501 + CCNA_02750 0.73 -0.7 2,911,501 + CCNA_02750 0.73 -0.1 2,911,509 - CCNA_02750 0.74 +1.0 2,911,509 - CCNA_02750 0.74 +1.9 2,911,509 - CCNA_02750 0.74 +1.0 2,911,509 - CCNA_02750 0.74 +1.5 2,911,515 + CCNA_02750 0.75 -1.4 2,911,524 + CCNA_02750 0.76 +0.2 2,911,532 - CCNA_02750 0.78 +1.4 2,911,558 - CCNA_02750 0.81 +2.2 2,911,558 - CCNA_02750 0.81 +0.1 2,911,558 - CCNA_02750 0.81 +0.2 2,911,581 + CCNA_02750 0.85 -0.5 2,911,584 - CCNA_02750 0.85 +1.0 2,911,589 + CCNA_02750 0.86 -2.3 2,911,589 - CCNA_02750 0.86 +0.6 2,911,617 + +0.1 2,911,622 - +1.6 2,911,648 - +2.3 2,911,662 + -2.7 2,911,662 + +0.5 2,911,662 + -1.2 2,911,662 + -1.2 2,911,670 - +0.0 2,911,671 - +0.3 2,911,725 + -1.1 2,911,725 + -1.6 2,911,725 + +0.3 2,911,725 + -1.6 2,911,733 - -2.0 2,911,733 - +0.7 2,911,738 - +0.3 2,911,776 - +1.3 2,911,784 + CCNA_02751 0.11 -1.6 2,911,804 + CCNA_02751 0.13 -1.1 2,911,804 + CCNA_02751 0.13 +0.5 2,911,825 + CCNA_02751 0.15 -1.0 2,911,872 + CCNA_02751 0.19 +0.6 2,911,875 - CCNA_02751 0.20 +1.3 2,911,996 + CCNA_02751 0.32 -0.7 2,912,085 - CCNA_02751 0.41 +0.7 2,912,113 - CCNA_02751 0.43 +1.0 2,912,113 - CCNA_02751 0.43 +0.8 2,912,118 - CCNA_02751 0.44 +0.9 2,912,123 + CCNA_02751 0.44 -0.6 2,912,123 + CCNA_02751 0.44 -0.8 2,912,131 - CCNA_02751 0.45 +0.8 2,912,142 + CCNA_02751 0.46 -0.4 2,912,150 - CCNA_02751 0.47 +0.2 2,912,155 - CCNA_02751 0.48 -0.0 2,912,158 - CCNA_02751 0.48 +1.1 2,912,193 - CCNA_02751 0.51 +0.8 2,912,195 + CCNA_02751 0.52 +0.6 2,912,203 - CCNA_02751 0.52 +1.1 2,912,230 - CCNA_02751 0.55 +1.7 2,912,236 - CCNA_02751 0.56 +1.6 2,912,245 + CCNA_02751 0.57 -0.1 2,912,253 - CCNA_02751 0.57 +0.6 2,912,253 - CCNA_02751 0.57 -0.7 2,912,253 - CCNA_02751 0.57 +0.7 2,912,256 + CCNA_02751 0.58 +0.3 2,912,268 + CCNA_02751 0.59 -0.9 2,912,304 + CCNA_02751 0.63 +0.7 2,912,312 + CCNA_02751 0.63 +0.2 2,912,312 - CCNA_02751 0.63 +0.8 2,912,312 - CCNA_02751 0.63 +1.9 2,912,314 + CCNA_02751 0.64 +0.5 2,912,314 + CCNA_02751 0.64 +0.1 2,912,322 - CCNA_02751 0.64 -0.1 2,912,322 - CCNA_02751 0.64 +0.4 2,912,328 + CCNA_02751 0.65 -0.1 2,912,336 - CCNA_02751 0.66 +2.0 2,912,336 - CCNA_02751 0.66 +1.3 2,912,336 - CCNA_02751 0.66 -0.6 2,912,336 - CCNA_02751 0.66 +1.4 2,912,359 + CCNA_02751 0.68 +1.2 2,912,468 - CCNA_02751 0.79 +0.9 2,912,470 + CCNA_02751 0.79 -1.2 2,912,474 + CCNA_02751 0.80 +0.6 2,912,478 - CCNA_02751 0.80 +1.6 2,912,493 + CCNA_02751 0.81 -1.0 2,912,498 + CCNA_02751 0.82 -2.0 2,912,498 + CCNA_02751 0.82 +0.5 2,912,511 - CCNA_02751 0.83 +0.7 2,912,519 + CCNA_02751 0.84 -2.6 2,912,519 + CCNA_02751 0.84 -2.0 2,912,526 + CCNA_02751 0.85 +1.1 2,912,543 - CCNA_02751 0.86 +0.6 2,912,545 + CCNA_02751 0.87 -1.0 2,912,545 + CCNA_02751 0.87 -1.6 2,912,548 - CCNA_02751 0.87 +0.6 2,912,553 - CCNA_02751 0.87 +1.5 2,912,557 - CCNA_02751 0.88 +0.9 2,912,614 - -0.8 2,912,641 - +1.4 2,912,651 - +0.1 2,912,662 + +0.2 2,912,670 - +0.5
Or see this region's nucleotide sequence