Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02750

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02747 and CCNA_02748 are separated by 134 nucleotidesCCNA_02748 and CCNA_02749 are separated by 3 nucleotidesCCNA_02749 and CCNA_02750 are separated by 44 nucleotidesCCNA_02750 and CCNA_02751 overlap by 4 nucleotides CCNA_02747: CCNA_02747 - ABC transporter substrate-binding protein, at 2,909,315 to 2,910,127 _02747 CCNA_02748: CCNA_02748 - hypothetical protein, at 2,910,262 to 2,910,510 _02748 CCNA_02749: CCNA_02749 - hypothetical protein, at 2,910,514 to 2,910,963 _02749 CCNA_02750: CCNA_02750 - ABC transporter permease protein, at 2,911,008 to 2,911,682 _02750 CCNA_02751: CCNA_02751 - ABC transporter ATP-binding protein, at 2,911,679 to 2,912,677 _02751 Position (kb) 2911 2912Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2910.049 kb on - strandat 2910.059 kb on + strandat 2910.095 kb on + strandat 2910.103 kb on - strandat 2910.103 kb on - strandat 2910.103 kb on - strandat 2910.103 kb on - strandat 2910.103 kb on - strandat 2910.103 kb on - strandat 2910.117 kb on + strandat 2910.117 kb on + strandat 2910.117 kb on + strandat 2910.117 kb on + strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.125 kb on - strandat 2910.161 kb on - strandat 2910.209 kb on + strandat 2910.231 kb on + strandat 2910.233 kb on - strandat 2910.286 kb on + strandat 2910.286 kb on + strandat 2910.291 kb on + strand, within CCNA_02748at 2910.294 kb on - strand, within CCNA_02748at 2910.299 kb on - strand, within CCNA_02748at 2910.309 kb on + strand, within CCNA_02748at 2910.318 kb on + strand, within CCNA_02748at 2910.324 kb on - strand, within CCNA_02748at 2910.324 kb on - strand, within CCNA_02748at 2910.326 kb on - strand, within CCNA_02748at 2910.326 kb on - strand, within CCNA_02748at 2910.326 kb on - strand, within CCNA_02748at 2910.366 kb on + strand, within CCNA_02748at 2910.428 kb on + strand, within CCNA_02748at 2910.428 kb on + strand, within CCNA_02748at 2910.468 kb on + strand, within CCNA_02748at 2910.468 kb on + strand, within CCNA_02748at 2910.468 kb on + strand, within CCNA_02748at 2910.468 kb on + strand, within CCNA_02748at 2910.476 kb on - strand, within CCNA_02748at 2910.476 kb on - strand, within CCNA_02748at 2910.476 kb on - strand, within CCNA_02748at 2910.476 kb on - strand, within CCNA_02748at 2910.504 kb on + strandat 2910.504 kb on + strandat 2910.504 kb on + strandat 2910.512 kb on - strandat 2910.512 kb on - strandat 2910.512 kb on - strandat 2910.512 kb on - strandat 2910.512 kb on - strandat 2910.512 kb on - strandat 2910.520 kb on - strandat 2910.600 kb on + strand, within CCNA_02749at 2910.613 kb on + strand, within CCNA_02749at 2910.640 kb on - strand, within CCNA_02749at 2910.651 kb on + strand, within CCNA_02749at 2910.651 kb on + strand, within CCNA_02749at 2910.653 kb on + strand, within CCNA_02749at 2910.653 kb on + strand, within CCNA_02749at 2910.659 kb on - strand, within CCNA_02749at 2910.659 kb on - strand, within CCNA_02749at 2910.660 kb on - strand, within CCNA_02749at 2910.661 kb on - strand, within CCNA_02749at 2910.685 kb on + strand, within CCNA_02749at 2910.728 kb on + strand, within CCNA_02749at 2910.745 kb on + strand, within CCNA_02749at 2910.792 kb on - strand, within CCNA_02749at 2910.794 kb on + strand, within CCNA_02749at 2910.794 kb on + strand, within CCNA_02749at 2910.794 kb on + strand, within CCNA_02749at 2910.794 kb on + strand, within CCNA_02749at 2910.800 kb on - strand, within CCNA_02749at 2910.802 kb on - strand, within CCNA_02749at 2910.842 kb on + strand, within CCNA_02749at 2910.844 kb on - strand, within CCNA_02749at 2910.879 kb on + strand, within CCNA_02749at 2910.887 kb on - strand, within CCNA_02749at 2910.905 kb on + strand, within CCNA_02749at 2910.927 kb on + strandat 2910.927 kb on + strandat 2910.938 kb on + strandat 2910.938 kb on + strandat 2910.945 kb on + strandat 2910.946 kb on - strandat 2910.946 kb on - strandat 2910.949 kb on - strandat 2910.949 kb on - strandat 2910.954 kb on - strandat 2910.962 kb on + strandat 2910.962 kb on + strandat 2910.965 kb on - strandat 2911.031 kb on + strandat 2911.042 kb on - strandat 2911.057 kb on + strandat 2911.113 kb on - strand, within CCNA_02750at 2911.164 kb on - strand, within CCNA_02750at 2911.178 kb on - strand, within CCNA_02750at 2911.182 kb on + strand, within CCNA_02750at 2911.201 kb on - strand, within CCNA_02750at 2911.233 kb on - strand, within CCNA_02750at 2911.250 kb on - strand, within CCNA_02750at 2911.267 kb on - strand, within CCNA_02750at 2911.395 kb on - strand, within CCNA_02750at 2911.395 kb on - strand, within CCNA_02750at 2911.416 kb on - strand, within CCNA_02750at 2911.418 kb on + strand, within CCNA_02750at 2911.426 kb on - strand, within CCNA_02750at 2911.463 kb on + strand, within CCNA_02750at 2911.477 kb on + strand, within CCNA_02750at 2911.501 kb on + strand, within CCNA_02750at 2911.501 kb on + strand, within CCNA_02750at 2911.509 kb on - strand, within CCNA_02750at 2911.509 kb on - strand, within CCNA_02750at 2911.509 kb on - strand, within CCNA_02750at 2911.509 kb on - strand, within CCNA_02750at 2911.515 kb on + strand, within CCNA_02750at 2911.524 kb on + strand, within CCNA_02750at 2911.532 kb on - strand, within CCNA_02750at 2911.558 kb on - strand, within CCNA_02750at 2911.558 kb on - strand, within CCNA_02750at 2911.558 kb on - strand, within CCNA_02750at 2911.581 kb on + strand, within CCNA_02750at 2911.584 kb on - strand, within CCNA_02750at 2911.589 kb on + strand, within CCNA_02750at 2911.589 kb on - strand, within CCNA_02750at 2911.617 kb on + strandat 2911.622 kb on - strandat 2911.648 kb on - strandat 2911.662 kb on + strandat 2911.662 kb on + strandat 2911.662 kb on + strandat 2911.662 kb on + strandat 2911.670 kb on - strandat 2911.671 kb on - strandat 2911.725 kb on + strandat 2911.725 kb on + strandat 2911.725 kb on + strandat 2911.725 kb on + strandat 2911.733 kb on - strandat 2911.733 kb on - strandat 2911.738 kb on - strandat 2911.776 kb on - strandat 2911.784 kb on + strand, within CCNA_02751at 2911.804 kb on + strand, within CCNA_02751at 2911.804 kb on + strand, within CCNA_02751at 2911.825 kb on + strand, within CCNA_02751at 2911.872 kb on + strand, within CCNA_02751at 2911.875 kb on - strand, within CCNA_02751at 2911.996 kb on + strand, within CCNA_02751at 2912.085 kb on - strand, within CCNA_02751at 2912.113 kb on - strand, within CCNA_02751at 2912.113 kb on - strand, within CCNA_02751at 2912.118 kb on - strand, within CCNA_02751at 2912.123 kb on + strand, within CCNA_02751at 2912.123 kb on + strand, within CCNA_02751at 2912.131 kb on - strand, within CCNA_02751at 2912.142 kb on + strand, within CCNA_02751at 2912.150 kb on - strand, within CCNA_02751at 2912.155 kb on - strand, within CCNA_02751at 2912.158 kb on - strand, within CCNA_02751at 2912.193 kb on - strand, within CCNA_02751at 2912.195 kb on + strand, within CCNA_02751at 2912.203 kb on - strand, within CCNA_02751at 2912.230 kb on - strand, within CCNA_02751at 2912.236 kb on - strand, within CCNA_02751at 2912.245 kb on + strand, within CCNA_02751at 2912.253 kb on - strand, within CCNA_02751at 2912.253 kb on - strand, within CCNA_02751at 2912.253 kb on - strand, within CCNA_02751at 2912.256 kb on + strand, within CCNA_02751at 2912.268 kb on + strand, within CCNA_02751at 2912.304 kb on + strand, within CCNA_02751at 2912.312 kb on + strand, within CCNA_02751at 2912.312 kb on - strand, within CCNA_02751at 2912.312 kb on - strand, within CCNA_02751at 2912.314 kb on + strand, within CCNA_02751at 2912.314 kb on + strand, within CCNA_02751at 2912.322 kb on - strand, within CCNA_02751at 2912.322 kb on - strand, within CCNA_02751at 2912.328 kb on + strand, within CCNA_02751at 2912.336 kb on - strand, within CCNA_02751at 2912.336 kb on - strand, within CCNA_02751at 2912.336 kb on - strand, within CCNA_02751at 2912.336 kb on - strand, within CCNA_02751at 2912.359 kb on + strand, within CCNA_02751at 2912.468 kb on - strand, within CCNA_02751at 2912.470 kb on + strand, within CCNA_02751at 2912.474 kb on + strand, within CCNA_02751at 2912.478 kb on - strand, within CCNA_02751at 2912.493 kb on + strand, within CCNA_02751at 2912.498 kb on + strand, within CCNA_02751at 2912.498 kb on + strand, within CCNA_02751at 2912.511 kb on - strand, within CCNA_02751at 2912.519 kb on + strand, within CCNA_02751at 2912.519 kb on + strand, within CCNA_02751at 2912.526 kb on + strand, within CCNA_02751at 2912.543 kb on - strand, within CCNA_02751at 2912.545 kb on + strand, within CCNA_02751at 2912.545 kb on + strand, within CCNA_02751at 2912.548 kb on - strand, within CCNA_02751at 2912.553 kb on - strand, within CCNA_02751at 2912.557 kb on - strand, within CCNA_02751at 2912.614 kb on - strandat 2912.641 kb on - strandat 2912.651 kb on - strandat 2912.662 kb on + strandat 2912.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,910,049 - -0.6
2,910,059 + -0.8
2,910,095 + -2.3
2,910,103 - -0.9
2,910,103 - -1.1
2,910,103 - -0.5
2,910,103 - -1.0
2,910,103 - -0.7
2,910,103 - +1.5
2,910,117 + -0.4
2,910,117 + -1.8
2,910,117 + +0.9
2,910,117 + +0.5
2,910,125 - +0.2
2,910,125 - +0.6
2,910,125 - +0.4
2,910,125 - -0.5
2,910,125 - +0.0
2,910,125 - -0.7
2,910,125 - +0.1
2,910,125 - +0.0
2,910,125 - +0.2
2,910,161 - -0.3
2,910,209 + -1.0
2,910,231 + +1.6
2,910,233 - -1.5
2,910,286 + +0.9
2,910,286 + -0.4
2,910,291 + CCNA_02748 0.12 -1.8
2,910,294 - CCNA_02748 0.13 -0.1
2,910,299 - CCNA_02748 0.15 -0.0
2,910,309 + CCNA_02748 0.19 -0.2
2,910,318 + CCNA_02748 0.22 -0.7
2,910,324 - CCNA_02748 0.25 -0.3
2,910,324 - CCNA_02748 0.25 -1.4
2,910,326 - CCNA_02748 0.26 +0.7
2,910,326 - CCNA_02748 0.26 -0.5
2,910,326 - CCNA_02748 0.26 -1.3
2,910,366 + CCNA_02748 0.42 -1.0
2,910,428 + CCNA_02748 0.67 +3.1
2,910,428 + CCNA_02748 0.67 -1.0
2,910,468 + CCNA_02748 0.83 -1.5
2,910,468 + CCNA_02748 0.83 -1.3
2,910,468 + CCNA_02748 0.83 -0.8
2,910,468 + CCNA_02748 0.83 +0.3
2,910,476 - CCNA_02748 0.86 +2.1
2,910,476 - CCNA_02748 0.86 -2.4
2,910,476 - CCNA_02748 0.86 +0.0
2,910,476 - CCNA_02748 0.86 +1.3
2,910,504 + -0.1
2,910,504 + -0.5
2,910,504 + -0.8
2,910,512 - +1.2
2,910,512 - +1.0
2,910,512 - +0.6
2,910,512 - -0.5
2,910,512 - +1.6
2,910,512 - -0.5
2,910,520 - -0.1
2,910,600 + CCNA_02749 0.19 -0.6
2,910,613 + CCNA_02749 0.22 -1.4
2,910,640 - CCNA_02749 0.28 -1.4
2,910,651 + CCNA_02749 0.30 -0.5
2,910,651 + CCNA_02749 0.30 +0.1
2,910,653 + CCNA_02749 0.31 +0.3
2,910,653 + CCNA_02749 0.31 -0.1
2,910,659 - CCNA_02749 0.32 +1.2
2,910,659 - CCNA_02749 0.32 +2.1
2,910,660 - CCNA_02749 0.32 +0.7
2,910,661 - CCNA_02749 0.33 +0.6
2,910,685 + CCNA_02749 0.38 +0.0
2,910,728 + CCNA_02749 0.48 -0.5
2,910,745 + CCNA_02749 0.51 -0.1
2,910,792 - CCNA_02749 0.62 +0.6
2,910,794 + CCNA_02749 0.62 +0.4
2,910,794 + CCNA_02749 0.62 +0.9
2,910,794 + CCNA_02749 0.62 -0.1
2,910,794 + CCNA_02749 0.62 +0.4
2,910,800 - CCNA_02749 0.64 +0.5
2,910,802 - CCNA_02749 0.64 +0.3
2,910,842 + CCNA_02749 0.73 +0.2
2,910,844 - CCNA_02749 0.73 -0.9
2,910,879 + CCNA_02749 0.81 -2.2
2,910,887 - CCNA_02749 0.83 +1.0
2,910,905 + CCNA_02749 0.87 +0.9
2,910,927 + +1.6
2,910,927 + -0.3
2,910,938 + -1.8
2,910,938 + -1.2
2,910,945 + -2.2
2,910,946 - +0.5
2,910,946 - +2.0
2,910,949 - +0.3
2,910,949 - +1.4
2,910,954 - +0.6
2,910,962 + -0.2
2,910,962 + -0.2
2,910,965 - +1.4
2,911,031 + -1.7
2,911,042 - +1.4
2,911,057 + +1.3
2,911,113 - CCNA_02750 0.16 +1.0
2,911,164 - CCNA_02750 0.23 +1.2
2,911,178 - CCNA_02750 0.25 +0.7
2,911,182 + CCNA_02750 0.26 -1.3
2,911,201 - CCNA_02750 0.29 +1.8
2,911,233 - CCNA_02750 0.33 +1.5
2,911,250 - CCNA_02750 0.36 +1.5
2,911,267 - CCNA_02750 0.38 +1.6
2,911,395 - CCNA_02750 0.57 +1.4
2,911,395 - CCNA_02750 0.57 +2.5
2,911,416 - CCNA_02750 0.60 +1.3
2,911,418 + CCNA_02750 0.61 -1.6
2,911,426 - CCNA_02750 0.62 +1.5
2,911,463 + CCNA_02750 0.67 -0.0
2,911,477 + CCNA_02750 0.69 -0.8
2,911,501 + CCNA_02750 0.73 -0.7
2,911,501 + CCNA_02750 0.73 -0.1
2,911,509 - CCNA_02750 0.74 +1.0
2,911,509 - CCNA_02750 0.74 +1.9
2,911,509 - CCNA_02750 0.74 +1.0
2,911,509 - CCNA_02750 0.74 +1.5
2,911,515 + CCNA_02750 0.75 -1.4
2,911,524 + CCNA_02750 0.76 +0.2
2,911,532 - CCNA_02750 0.78 +1.4
2,911,558 - CCNA_02750 0.81 +2.2
2,911,558 - CCNA_02750 0.81 +0.1
2,911,558 - CCNA_02750 0.81 +0.2
2,911,581 + CCNA_02750 0.85 -0.5
2,911,584 - CCNA_02750 0.85 +1.0
2,911,589 + CCNA_02750 0.86 -2.3
2,911,589 - CCNA_02750 0.86 +0.6
2,911,617 + +0.1
2,911,622 - +1.6
2,911,648 - +2.3
2,911,662 + -2.7
2,911,662 + +0.5
2,911,662 + -1.2
2,911,662 + -1.2
2,911,670 - +0.0
2,911,671 - +0.3
2,911,725 + -1.1
2,911,725 + -1.6
2,911,725 + +0.3
2,911,725 + -1.6
2,911,733 - -2.0
2,911,733 - +0.7
2,911,738 - +0.3
2,911,776 - +1.3
2,911,784 + CCNA_02751 0.11 -1.6
2,911,804 + CCNA_02751 0.13 -1.1
2,911,804 + CCNA_02751 0.13 +0.5
2,911,825 + CCNA_02751 0.15 -1.0
2,911,872 + CCNA_02751 0.19 +0.6
2,911,875 - CCNA_02751 0.20 +1.3
2,911,996 + CCNA_02751 0.32 -0.7
2,912,085 - CCNA_02751 0.41 +0.7
2,912,113 - CCNA_02751 0.43 +1.0
2,912,113 - CCNA_02751 0.43 +0.8
2,912,118 - CCNA_02751 0.44 +0.9
2,912,123 + CCNA_02751 0.44 -0.6
2,912,123 + CCNA_02751 0.44 -0.8
2,912,131 - CCNA_02751 0.45 +0.8
2,912,142 + CCNA_02751 0.46 -0.4
2,912,150 - CCNA_02751 0.47 +0.2
2,912,155 - CCNA_02751 0.48 -0.0
2,912,158 - CCNA_02751 0.48 +1.1
2,912,193 - CCNA_02751 0.51 +0.8
2,912,195 + CCNA_02751 0.52 +0.6
2,912,203 - CCNA_02751 0.52 +1.1
2,912,230 - CCNA_02751 0.55 +1.7
2,912,236 - CCNA_02751 0.56 +1.6
2,912,245 + CCNA_02751 0.57 -0.1
2,912,253 - CCNA_02751 0.57 +0.6
2,912,253 - CCNA_02751 0.57 -0.7
2,912,253 - CCNA_02751 0.57 +0.7
2,912,256 + CCNA_02751 0.58 +0.3
2,912,268 + CCNA_02751 0.59 -0.9
2,912,304 + CCNA_02751 0.63 +0.7
2,912,312 + CCNA_02751 0.63 +0.2
2,912,312 - CCNA_02751 0.63 +0.8
2,912,312 - CCNA_02751 0.63 +1.9
2,912,314 + CCNA_02751 0.64 +0.5
2,912,314 + CCNA_02751 0.64 +0.1
2,912,322 - CCNA_02751 0.64 -0.1
2,912,322 - CCNA_02751 0.64 +0.4
2,912,328 + CCNA_02751 0.65 -0.1
2,912,336 - CCNA_02751 0.66 +2.0
2,912,336 - CCNA_02751 0.66 +1.3
2,912,336 - CCNA_02751 0.66 -0.6
2,912,336 - CCNA_02751 0.66 +1.4
2,912,359 + CCNA_02751 0.68 +1.2
2,912,468 - CCNA_02751 0.79 +0.9
2,912,470 + CCNA_02751 0.79 -1.2
2,912,474 + CCNA_02751 0.80 +0.6
2,912,478 - CCNA_02751 0.80 +1.6
2,912,493 + CCNA_02751 0.81 -1.0
2,912,498 + CCNA_02751 0.82 -2.0
2,912,498 + CCNA_02751 0.82 +0.5
2,912,511 - CCNA_02751 0.83 +0.7
2,912,519 + CCNA_02751 0.84 -2.6
2,912,519 + CCNA_02751 0.84 -2.0
2,912,526 + CCNA_02751 0.85 +1.1
2,912,543 - CCNA_02751 0.86 +0.6
2,912,545 + CCNA_02751 0.87 -1.0
2,912,545 + CCNA_02751 0.87 -1.6
2,912,548 - CCNA_02751 0.87 +0.6
2,912,553 - CCNA_02751 0.87 +1.5
2,912,557 - CCNA_02751 0.88 +0.9
2,912,614 - -0.8
2,912,641 - +1.4
2,912,651 - +0.1
2,912,662 + +0.2
2,912,670 - +0.5

Or see this region's nucleotide sequence