Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01863

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01861 and CCNA_01862 are separated by 406 nucleotidesCCNA_01862 and CCNA_01863 are separated by 9 nucleotidesCCNA_01863 and CCNA_01864 are separated by 95 nucleotidesCCNA_01864 and CCNA_01865 are separated by 88 nucleotides CCNA_01861: CCNA_01861 - hypothetical protein, at 1,995,291 to 1,996,484 _01861 CCNA_01862: CCNA_01862 - hypothetical protein, at 1,996,891 to 1,997,184 _01862 CCNA_01863: CCNA_01863 - outer membrane efflux protein, at 1,997,194 to 1,998,630 _01863 CCNA_01864: CCNA_01864 - TetR-family transcriptional regulator, at 1,998,726 to 1,999,349 _01864 CCNA_01865: CCNA_01865 - periplasmic multidrug efflux lipoprotein precursor, at 1,999,438 to 2,000,526 _01865 Position (kb) 1997 1998 1999Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1996.195 kb on + strand, within CCNA_01861at 1996.196 kb on + strand, within CCNA_01861at 1996.204 kb on - strand, within CCNA_01861at 1996.204 kb on - strand, within CCNA_01861at 1996.206 kb on + strand, within CCNA_01861at 1996.206 kb on + strand, within CCNA_01861at 1996.229 kb on + strand, within CCNA_01861at 1996.229 kb on + strand, within CCNA_01861at 1996.229 kb on + strand, within CCNA_01861at 1996.239 kb on - strand, within CCNA_01861at 1996.254 kb on - strand, within CCNA_01861at 1996.254 kb on - strand, within CCNA_01861at 1996.257 kb on + strand, within CCNA_01861at 1996.274 kb on + strand, within CCNA_01861at 1996.343 kb on + strand, within CCNA_01861at 1996.354 kb on - strand, within CCNA_01861at 1996.389 kb on + strandat 1996.457 kb on + strandat 1996.465 kb on - strandat 1996.478 kb on + strandat 1996.486 kb on - strandat 1996.488 kb on + strandat 1996.518 kb on - strandat 1996.564 kb on - strandat 1996.606 kb on + strandat 1996.614 kb on - strandat 1996.614 kb on - strandat 1996.634 kb on + strandat 1996.634 kb on - strandat 1996.634 kb on - strandat 1996.669 kb on + strandat 1996.669 kb on + strandat 1996.669 kb on + strandat 1996.669 kb on + strandat 1996.671 kb on + strandat 1996.672 kb on - strandat 1996.672 kb on - strandat 1996.677 kb on - strandat 1996.677 kb on - strandat 1996.704 kb on + strandat 1996.712 kb on - strandat 1996.762 kb on + strandat 1996.763 kb on - strandat 1996.850 kb on - strandat 1996.866 kb on + strandat 1996.874 kb on - strandat 1996.899 kb on + strandat 1996.902 kb on - strandat 1996.907 kb on - strandat 1996.907 kb on - strandat 1996.939 kb on - strand, within CCNA_01862at 1996.940 kb on - strand, within CCNA_01862at 1997.001 kb on + strand, within CCNA_01862at 1997.002 kb on - strand, within CCNA_01862at 1997.007 kb on - strand, within CCNA_01862at 1997.017 kb on - strand, within CCNA_01862at 1997.055 kb on + strand, within CCNA_01862at 1997.118 kb on - strand, within CCNA_01862at 1997.167 kb on + strandat 1997.202 kb on + strandat 1997.258 kb on + strandat 1997.258 kb on + strandat 1997.266 kb on - strandat 1997.308 kb on + strandat 1997.315 kb on + strandat 1997.363 kb on + strand, within CCNA_01863at 1997.382 kb on - strand, within CCNA_01863at 1997.382 kb on - strand, within CCNA_01863at 1997.407 kb on + strand, within CCNA_01863at 1997.407 kb on + strand, within CCNA_01863at 1997.407 kb on + strand, within CCNA_01863at 1997.415 kb on - strand, within CCNA_01863at 1997.415 kb on - strand, within CCNA_01863at 1997.415 kb on - strand, within CCNA_01863at 1997.415 kb on - strand, within CCNA_01863at 1997.417 kb on - strand, within CCNA_01863at 1997.428 kb on - strand, within CCNA_01863at 1997.432 kb on - strand, within CCNA_01863at 1997.442 kb on - strand, within CCNA_01863at 1997.475 kb on - strand, within CCNA_01863at 1997.486 kb on - strand, within CCNA_01863at 1997.519 kb on + strand, within CCNA_01863at 1997.519 kb on + strand, within CCNA_01863at 1997.519 kb on + strand, within CCNA_01863at 1997.527 kb on - strand, within CCNA_01863at 1997.546 kb on + strand, within CCNA_01863at 1997.568 kb on + strand, within CCNA_01863at 1997.569 kb on + strand, within CCNA_01863at 1997.584 kb on + strand, within CCNA_01863at 1997.641 kb on - strand, within CCNA_01863at 1997.658 kb on + strandat 1997.666 kb on - strand, within CCNA_01863at 1997.692 kb on - strand, within CCNA_01863at 1997.746 kb on - strand, within CCNA_01863at 1997.807 kb on + strand, within CCNA_01863at 1997.817 kb on + strand, within CCNA_01863at 1997.825 kb on - strand, within CCNA_01863at 1997.831 kb on + strand, within CCNA_01863at 1997.831 kb on + strand, within CCNA_01863at 1997.839 kb on - strand, within CCNA_01863at 1997.839 kb on - strand, within CCNA_01863at 1997.839 kb on - strand, within CCNA_01863at 1997.839 kb on - strand, within CCNA_01863at 1997.864 kb on - strand, within CCNA_01863at 1997.889 kb on + strand, within CCNA_01863at 1997.914 kb on + strand, within CCNA_01863at 1997.914 kb on + strand, within CCNA_01863at 1997.916 kb on - strand, within CCNA_01863at 1997.919 kb on + strand, within CCNA_01863at 1997.922 kb on - strand, within CCNA_01863at 1997.922 kb on - strand, within CCNA_01863at 1997.922 kb on - strand, within CCNA_01863at 1997.922 kb on - strand, within CCNA_01863at 1997.922 kb on - strand, within CCNA_01863at 1997.924 kb on + strand, within CCNA_01863at 1997.927 kb on - strand, within CCNA_01863at 1997.990 kb on + strand, within CCNA_01863at 1997.998 kb on - strand, within CCNA_01863at 1998.011 kb on + strand, within CCNA_01863at 1998.011 kb on + strand, within CCNA_01863at 1998.053 kb on - strand, within CCNA_01863at 1998.053 kb on - strand, within CCNA_01863at 1998.113 kb on + strand, within CCNA_01863at 1998.118 kb on + strand, within CCNA_01863at 1998.139 kb on + strand, within CCNA_01863at 1998.139 kb on + strand, within CCNA_01863at 1998.139 kb on + strand, within CCNA_01863at 1998.221 kb on - strand, within CCNA_01863at 1998.328 kb on - strand, within CCNA_01863at 1998.328 kb on - strand, within CCNA_01863at 1998.361 kb on + strand, within CCNA_01863at 1998.380 kb on - strand, within CCNA_01863at 1998.438 kb on - strand, within CCNA_01863at 1998.443 kb on - strand, within CCNA_01863at 1998.543 kb on + strandat 1998.553 kb on + strandat 1998.561 kb on - strandat 1998.587 kb on + strandat 1998.595 kb on - strandat 1998.595 kb on - strandat 1998.796 kb on + strand, within CCNA_01864at 1998.888 kb on + strand, within CCNA_01864at 1998.888 kb on + strand, within CCNA_01864at 1998.990 kb on + strand, within CCNA_01864at 1999.060 kb on + strand, within CCNA_01864at 1999.101 kb on + strand, within CCNA_01864at 1999.132 kb on + strand, within CCNA_01864at 1999.132 kb on + strand, within CCNA_01864at 1999.321 kb on + strandat 1999.331 kb on + strandat 1999.344 kb on + strandat 1999.352 kb on - strandat 1999.352 kb on - strandat 1999.428 kb on + strandat 1999.428 kb on + strandat 1999.436 kb on - strandat 1999.451 kb on + strandat 1999.504 kb on + strandat 1999.532 kb on + strandat 1999.540 kb on - strandat 1999.598 kb on - strand, within CCNA_01865at 1999.627 kb on - strand, within CCNA_01865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,996,195 + CCNA_01861 0.76 -2.7
1,996,196 + CCNA_01861 0.76 +1.8
1,996,204 - CCNA_01861 0.76 -2.1
1,996,204 - CCNA_01861 0.76 +1.1
1,996,206 + CCNA_01861 0.77 -1.0
1,996,206 + CCNA_01861 0.77 +0.6
1,996,229 + CCNA_01861 0.79 -0.9
1,996,229 + CCNA_01861 0.79 +0.4
1,996,229 + CCNA_01861 0.79 -0.0
1,996,239 - CCNA_01861 0.79 -1.3
1,996,254 - CCNA_01861 0.81 -1.0
1,996,254 - CCNA_01861 0.81 -0.4
1,996,257 + CCNA_01861 0.81 -0.9
1,996,274 + CCNA_01861 0.82 +0.0
1,996,343 + CCNA_01861 0.88 +0.6
1,996,354 - CCNA_01861 0.89 -1.5
1,996,389 + +0.1
1,996,457 + +0.8
1,996,465 - -1.3
1,996,478 + -0.1
1,996,486 - +1.3
1,996,488 + -0.7
1,996,518 - -0.4
1,996,564 - -1.9
1,996,606 + -0.6
1,996,614 - -0.1
1,996,614 - -0.6
1,996,634 + -2.0
1,996,634 - -1.9
1,996,634 - -0.8
1,996,669 + -0.8
1,996,669 + +1.8
1,996,669 + -0.4
1,996,669 + -0.4
1,996,671 + -2.3
1,996,672 - +1.1
1,996,672 - +1.4
1,996,677 - +0.3
1,996,677 - -2.7
1,996,704 + -0.2
1,996,712 - -1.6
1,996,762 + -0.9
1,996,763 - -0.2
1,996,850 - +0.1
1,996,866 + -0.2
1,996,874 - -2.3
1,996,899 + -1.4
1,996,902 - -0.6
1,996,907 - -1.9
1,996,907 - -1.9
1,996,939 - CCNA_01862 0.16 -1.8
1,996,940 - CCNA_01862 0.17 -1.6
1,997,001 + CCNA_01862 0.37 -2.9
1,997,002 - CCNA_01862 0.38 -2.7
1,997,007 - CCNA_01862 0.39 -2.1
1,997,017 - CCNA_01862 0.43 -2.9
1,997,055 + CCNA_01862 0.56 -0.7
1,997,118 - CCNA_01862 0.77 -0.5
1,997,167 + +0.0
1,997,202 + -1.1
1,997,258 + -0.8
1,997,258 + +2.5
1,997,266 - -1.9
1,997,308 + -1.1
1,997,315 + +0.1
1,997,363 + CCNA_01863 0.12 -2.1
1,997,382 - CCNA_01863 0.13 +1.7
1,997,382 - CCNA_01863 0.13 +1.1
1,997,407 + CCNA_01863 0.15 -3.0
1,997,407 + CCNA_01863 0.15 -0.7
1,997,407 + CCNA_01863 0.15 +0.0
1,997,415 - CCNA_01863 0.15 +0.2
1,997,415 - CCNA_01863 0.15 +0.6
1,997,415 - CCNA_01863 0.15 -0.4
1,997,415 - CCNA_01863 0.15 -2.1
1,997,417 - CCNA_01863 0.16 +0.9
1,997,428 - CCNA_01863 0.16 +0.0
1,997,432 - CCNA_01863 0.17 +0.2
1,997,442 - CCNA_01863 0.17 +1.2
1,997,475 - CCNA_01863 0.20 +0.6
1,997,486 - CCNA_01863 0.20 +1.1
1,997,519 + CCNA_01863 0.23 -0.9
1,997,519 + CCNA_01863 0.23 -2.3
1,997,519 + CCNA_01863 0.23 +0.9
1,997,527 - CCNA_01863 0.23 +0.8
1,997,546 + CCNA_01863 0.24 +0.4
1,997,568 + CCNA_01863 0.26 -2.1
1,997,569 + CCNA_01863 0.26 -0.3
1,997,584 + CCNA_01863 0.27 -0.7
1,997,641 - CCNA_01863 0.31 +0.8
1,997,658 + +2.6
1,997,666 - CCNA_01863 0.33 -0.4
1,997,692 - CCNA_01863 0.35 -0.9
1,997,746 - CCNA_01863 0.38 -0.5
1,997,807 + CCNA_01863 0.43 +1.0
1,997,817 + CCNA_01863 0.43 +0.2
1,997,825 - CCNA_01863 0.44 +0.3
1,997,831 + CCNA_01863 0.44 -0.7
1,997,831 + CCNA_01863 0.44 +0.3
1,997,839 - CCNA_01863 0.45 +0.4
1,997,839 - CCNA_01863 0.45 +0.8
1,997,839 - CCNA_01863 0.45 +0.2
1,997,839 - CCNA_01863 0.45 +0.2
1,997,864 - CCNA_01863 0.47 +0.2
1,997,889 + CCNA_01863 0.48 -1.2
1,997,914 + CCNA_01863 0.50 -0.1
1,997,914 + CCNA_01863 0.50 +1.4
1,997,916 - CCNA_01863 0.50 -0.3
1,997,919 + CCNA_01863 0.50 -1.2
1,997,922 - CCNA_01863 0.51 -0.3
1,997,922 - CCNA_01863 0.51 -1.0
1,997,922 - CCNA_01863 0.51 +1.6
1,997,922 - CCNA_01863 0.51 -1.0
1,997,922 - CCNA_01863 0.51 +1.1
1,997,924 + CCNA_01863 0.51 -1.5
1,997,927 - CCNA_01863 0.51 +0.5
1,997,990 + CCNA_01863 0.55 -0.9
1,997,998 - CCNA_01863 0.56 -0.9
1,998,011 + CCNA_01863 0.57 +0.5
1,998,011 + CCNA_01863 0.57 -1.5
1,998,053 - CCNA_01863 0.60 +1.1
1,998,053 - CCNA_01863 0.60 +0.3
1,998,113 + CCNA_01863 0.64 -1.3
1,998,118 + CCNA_01863 0.64 +1.7
1,998,139 + CCNA_01863 0.66 +0.3
1,998,139 + CCNA_01863 0.66 -2.0
1,998,139 + CCNA_01863 0.66 +0.8
1,998,221 - CCNA_01863 0.71 +0.5
1,998,328 - CCNA_01863 0.79 +0.1
1,998,328 - CCNA_01863 0.79 +0.5
1,998,361 + CCNA_01863 0.81 -0.4
1,998,380 - CCNA_01863 0.83 -0.5
1,998,438 - CCNA_01863 0.87 -0.2
1,998,443 - CCNA_01863 0.87 +0.1
1,998,543 + -1.1
1,998,553 + +0.0
1,998,561 - +0.2
1,998,587 + -0.1
1,998,595 - +1.9
1,998,595 - +0.2
1,998,796 + CCNA_01864 0.11 -1.4
1,998,888 + CCNA_01864 0.26 +0.4
1,998,888 + CCNA_01864 0.26 -1.4
1,998,990 + CCNA_01864 0.42 -1.4
1,999,060 + CCNA_01864 0.54 -0.7
1,999,101 + CCNA_01864 0.60 -0.4
1,999,132 + CCNA_01864 0.65 -0.6
1,999,132 + CCNA_01864 0.65 -1.8
1,999,321 + -0.7
1,999,331 + +1.8
1,999,344 + -0.2
1,999,352 - +0.3
1,999,352 - -1.3
1,999,428 + +0.9
1,999,428 + +0.6
1,999,436 - -0.3
1,999,451 + -2.3
1,999,504 + +1.1
1,999,532 + +0.4
1,999,540 - -1.6
1,999,598 - CCNA_01865 0.15 -1.9
1,999,627 - CCNA_01865 0.17 -1.5

Or see this region's nucleotide sequence