Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01726

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01725 and CCNA_01726 are separated by 125 nucleotidesCCNA_01726 and CCNA_01727 are separated by 78 nucleotides CCNA_01725: CCNA_01725 - beta-barrel assembly machine (BAM) protein BamB, at 1,851,328 to 1,852,758 _01725 CCNA_01726: CCNA_01726 - EngA-subfamily GTPase protein, at 1,852,884 to 1,854,650 _01726 CCNA_01727: CCNA_01727 - methyl-accepting chemotaxis protein, at 1,854,729 to 1,856,234 _01727 Position (kb) 1852 1853 1854 1855Strain fitness (log2 ratio) -1 0 1 2at 1852.863 kb on + strandat 1852.888 kb on - strandat 1854.491 kb on + strandat 1854.499 kb on - strandat 1854.547 kb on + strandat 1854.644 kb on + strandat 1854.644 kb on + strandat 1854.644 kb on + strandat 1854.644 kb on + strandat 1854.644 kb on + strandat 1854.775 kb on + strandat 1854.783 kb on - strandat 1854.817 kb on + strandat 1854.830 kb on - strandat 1854.847 kb on - strandat 1854.860 kb on + strandat 1854.888 kb on + strand, within CCNA_01727at 1854.888 kb on - strand, within CCNA_01727at 1854.909 kb on + strand, within CCNA_01727at 1854.943 kb on + strand, within CCNA_01727at 1855.014 kb on - strand, within CCNA_01727at 1855.025 kb on - strand, within CCNA_01727at 1855.076 kb on - strand, within CCNA_01727at 1855.149 kb on - strand, within CCNA_01727at 1855.193 kb on + strand, within CCNA_01727at 1855.216 kb on + strand, within CCNA_01727at 1855.226 kb on + strand, within CCNA_01727at 1855.302 kb on - strand, within CCNA_01727at 1855.360 kb on - strand, within CCNA_01727at 1855.520 kb on + strand, within CCNA_01727at 1855.528 kb on - strand, within CCNA_01727at 1855.528 kb on - strand, within CCNA_01727at 1855.601 kb on - strand, within CCNA_01727at 1855.647 kb on + strand, within CCNA_01727

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
1,852,863 + +1.0
1,852,888 - -0.1
1,854,491 + +1.1
1,854,499 - -0.5
1,854,547 + +0.8
1,854,644 + +1.1
1,854,644 + +1.6
1,854,644 + +1.2
1,854,644 + +1.0
1,854,644 + +1.2
1,854,775 + +1.0
1,854,783 - +1.7
1,854,817 + -0.3
1,854,830 - +1.5
1,854,847 - +0.2
1,854,860 + +0.4
1,854,888 + CCNA_01727 0.11 +1.2
1,854,888 - CCNA_01727 0.11 +0.7
1,854,909 + CCNA_01727 0.12 +1.0
1,854,943 + CCNA_01727 0.14 +1.7
1,855,014 - CCNA_01727 0.19 -0.2
1,855,025 - CCNA_01727 0.20 +0.1
1,855,076 - CCNA_01727 0.23 -0.6
1,855,149 - CCNA_01727 0.28 +0.0
1,855,193 + CCNA_01727 0.31 +1.8
1,855,216 + CCNA_01727 0.32 +0.8
1,855,226 + CCNA_01727 0.33 +1.0
1,855,302 - CCNA_01727 0.38 +1.2
1,855,360 - CCNA_01727 0.42 +1.0
1,855,520 + CCNA_01727 0.53 +1.1
1,855,528 - CCNA_01727 0.53 +0.2
1,855,528 - CCNA_01727 0.53 +0.8
1,855,601 - CCNA_01727 0.58 +0.5
1,855,647 + CCNA_01727 0.61 -0.2

Or see this region's nucleotide sequence