Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22305

Experiment: R2A with perchlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22295 and CA265_RS22300 are separated by 0 nucleotidesCA265_RS22300 and CA265_RS22305 are separated by 116 nucleotidesCA265_RS22305 and CA265_RS22310 are separated by 121 nucleotidesCA265_RS22310 and CA265_RS22315 are separated by 192 nucleotides CA265_RS22295: CA265_RS22295 - hypothetical protein, at 5,477,524 to 5,477,808 _RS22295 CA265_RS22300: CA265_RS22300 - EamA family transporter, at 5,477,809 to 5,478,660 _RS22300 CA265_RS22305: CA265_RS22305 - hypothetical protein, at 5,478,777 to 5,479,124 _RS22305 CA265_RS22310: CA265_RS22310 - superoxide dismutase, at 5,479,246 to 5,479,776 _RS22310 CA265_RS22315: CA265_RS22315 - hypothetical protein, at 5,479,969 to 5,480,502 _RS22315 Position (kb) 5478 5479 5480Strain fitness (log2 ratio) -3 -2 -1 0 1at 5477.810 kb on + strandat 5477.810 kb on + strandat 5477.811 kb on - strandat 5477.897 kb on + strand, within CA265_RS22300at 5477.954 kb on - strand, within CA265_RS22300at 5477.986 kb on - strand, within CA265_RS22300at 5478.025 kb on + strand, within CA265_RS22300at 5478.025 kb on + strand, within CA265_RS22300at 5478.026 kb on - strand, within CA265_RS22300at 5478.026 kb on - strand, within CA265_RS22300at 5478.055 kb on + strand, within CA265_RS22300at 5478.076 kb on + strand, within CA265_RS22300at 5478.161 kb on - strand, within CA265_RS22300at 5478.185 kb on - strand, within CA265_RS22300at 5478.215 kb on - strand, within CA265_RS22300at 5478.252 kb on + strand, within CA265_RS22300at 5478.295 kb on + strand, within CA265_RS22300at 5478.397 kb on + strandat 5478.397 kb on + strand, within CA265_RS22300at 5478.407 kb on + strand, within CA265_RS22300at 5478.408 kb on - strand, within CA265_RS22300at 5478.412 kb on + strand, within CA265_RS22300at 5478.476 kb on - strand, within CA265_RS22300at 5478.496 kb on - strand, within CA265_RS22300at 5478.523 kb on + strand, within CA265_RS22300at 5478.523 kb on + strand, within CA265_RS22300at 5478.602 kb on - strandat 5478.613 kb on - strandat 5478.619 kb on + strandat 5478.643 kb on - strandat 5478.643 kb on - strandat 5478.879 kb on + strand, within CA265_RS22305at 5478.879 kb on + strand, within CA265_RS22305at 5478.883 kb on - strand, within CA265_RS22305at 5478.920 kb on - strand, within CA265_RS22305at 5478.922 kb on - strand, within CA265_RS22305at 5478.982 kb on - strand, within CA265_RS22305at 5479.124 kb on + strandat 5479.125 kb on - strandat 5479.125 kb on - strandat 5479.125 kb on - strandat 5479.128 kb on + strandat 5479.128 kb on + strandat 5479.130 kb on + strandat 5479.143 kb on - strandat 5479.232 kb on + strandat 5479.268 kb on + strandat 5479.272 kb on + strandat 5479.274 kb on + strandat 5479.449 kb on + strand, within CA265_RS22310at 5479.449 kb on + strand, within CA265_RS22310at 5479.450 kb on - strand, within CA265_RS22310at 5479.450 kb on - strand, within CA265_RS22310at 5479.450 kb on - strand, within CA265_RS22310at 5479.575 kb on + strandat 5479.592 kb on + strand, within CA265_RS22310at 5479.593 kb on - strand, within CA265_RS22310at 5479.611 kb on + strandat 5479.689 kb on - strand, within CA265_RS22310at 5479.689 kb on - strand, within CA265_RS22310at 5479.708 kb on + strand, within CA265_RS22310at 5479.710 kb on + strand, within CA265_RS22310at 5479.711 kb on - strand, within CA265_RS22310at 5479.774 kb on + strandat 5479.779 kb on + strandat 5479.783 kb on + strandat 5479.803 kb on + strandat 5479.803 kb on + strandat 5479.979 kb on + strandat 5480.040 kb on - strand, within CA265_RS22315at 5480.072 kb on + strand, within CA265_RS22315at 5480.075 kb on + strand, within CA265_RS22315at 5480.080 kb on - strand, within CA265_RS22315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with perchlorate 6.25 mM
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5,477,810 + -0.1
5,477,810 + +1.7
5,477,811 - +0.6
5,477,897 + CA265_RS22300 0.10 -0.6
5,477,954 - CA265_RS22300 0.17 +0.1
5,477,986 - CA265_RS22300 0.21 -0.8
5,478,025 + CA265_RS22300 0.25 +0.0
5,478,025 + CA265_RS22300 0.25 -0.1
5,478,026 - CA265_RS22300 0.25 -0.2
5,478,026 - CA265_RS22300 0.25 -0.2
5,478,055 + CA265_RS22300 0.29 +1.4
5,478,076 + CA265_RS22300 0.31 +0.9
5,478,161 - CA265_RS22300 0.41 +1.2
5,478,185 - CA265_RS22300 0.44 -0.4
5,478,215 - CA265_RS22300 0.48 -1.7
5,478,252 + CA265_RS22300 0.52 +0.3
5,478,295 + CA265_RS22300 0.57 +1.4
5,478,397 + -0.6
5,478,397 + CA265_RS22300 0.69 -0.1
5,478,407 + CA265_RS22300 0.70 -0.1
5,478,408 - CA265_RS22300 0.70 -0.9
5,478,412 + CA265_RS22300 0.71 -1.4
5,478,476 - CA265_RS22300 0.78 +0.2
5,478,496 - CA265_RS22300 0.81 +0.0
5,478,523 + CA265_RS22300 0.84 -0.6
5,478,523 + CA265_RS22300 0.84 +0.9
5,478,602 - -3.1
5,478,613 - -0.1
5,478,619 + -2.2
5,478,643 - -1.1
5,478,643 - -0.5
5,478,879 + CA265_RS22305 0.29 +0.6
5,478,879 + CA265_RS22305 0.29 -0.4
5,478,883 - CA265_RS22305 0.30 +0.4
5,478,920 - CA265_RS22305 0.41 +0.2
5,478,922 - CA265_RS22305 0.42 +0.3
5,478,982 - CA265_RS22305 0.59 +0.4
5,479,124 + -0.1
5,479,125 - -0.0
5,479,125 - -0.6
5,479,125 - -0.2
5,479,128 + -0.4
5,479,128 + +0.2
5,479,130 + -0.3
5,479,143 - +1.0
5,479,232 + +0.5
5,479,268 + -0.2
5,479,272 + -0.4
5,479,274 + +0.6
5,479,449 + CA265_RS22310 0.38 +0.3
5,479,449 + CA265_RS22310 0.38 +0.5
5,479,450 - CA265_RS22310 0.38 +0.9
5,479,450 - CA265_RS22310 0.38 +0.7
5,479,450 - CA265_RS22310 0.38 -0.1
5,479,575 + +0.7
5,479,592 + CA265_RS22310 0.65 +0.5
5,479,593 - CA265_RS22310 0.65 +0.5
5,479,611 + +1.7
5,479,689 - CA265_RS22310 0.83 -0.1
5,479,689 - CA265_RS22310 0.83 +0.2
5,479,708 + CA265_RS22310 0.87 +0.3
5,479,710 + CA265_RS22310 0.87 -1.7
5,479,711 - CA265_RS22310 0.88 +1.3
5,479,774 + -1.1
5,479,779 + +0.3
5,479,783 + +0.1
5,479,803 + -0.7
5,479,803 + -0.8
5,479,979 + -0.2
5,480,040 - CA265_RS22315 0.13 +0.1
5,480,072 + CA265_RS22315 0.19 +0.6
5,480,075 + CA265_RS22315 0.20 -0.3
5,480,080 - CA265_RS22315 0.21 -0.3

Or see this region's nucleotide sequence