Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24960 and AO356_24965 are separated by 112 nucleotides AO356_24965 and AO356_24970 are separated by 141 nucleotides
AO356_24960: AO356_24960 - hydroxyproline-2-epimerase, at 5,654,494 to 5,655,426
_24960
AO356_24965: AO356_24965 - GntR family transcriptional regulator, at 5,655,539 to 5,656,210
_24965
AO356_24970: AO356_24970 - MFS transporter, at 5,656,352 to 5,657,518
_24970
Position (kb) 5655
5656
5657 Strain fitness (log2 ratio) -2
-1
0
1 at 5654.561 kb on + strand at 5654.736 kb on - strand, within AO356_24960 at 5654.736 kb on - strand, within AO356_24960 at 5654.802 kb on + strand, within AO356_24960 at 5654.860 kb on + strand, within AO356_24960 at 5654.867 kb on + strand, within AO356_24960 at 5654.867 kb on + strand, within AO356_24960 at 5654.867 kb on + strand, within AO356_24960 at 5654.868 kb on - strand, within AO356_24960 at 5655.017 kb on + strand, within AO356_24960 at 5655.499 kb on + strand at 5655.500 kb on - strand at 5655.712 kb on - strand, within AO356_24965 at 5655.712 kb on - strand, within AO356_24965 at 5656.203 kb on - strand at 5656.230 kb on + strand at 5656.245 kb on + strand at 5656.245 kb on + strand at 5656.245 kb on + strand at 5656.247 kb on + strand at 5656.248 kb on - strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.377 kb on + strand at 5656.378 kb on - strand at 5656.378 kb on - strand at 5656.378 kb on - strand at 5656.518 kb on + strand, within AO356_24970 at 5656.519 kb on - strand, within AO356_24970 at 5656.611 kb on + strand, within AO356_24970 at 5656.611 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.883 kb on + strand, within AO356_24970 at 5656.884 kb on - strand, within AO356_24970 at 5657.165 kb on - strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.167 kb on - strand, within AO356_24970
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,654,561 + +0.2 5,654,736 - AO356_24960 0.26 -0.8 5,654,736 - AO356_24960 0.26 -0.5 5,654,802 + AO356_24960 0.33 +0.1 5,654,860 + AO356_24960 0.39 +0.5 5,654,867 + AO356_24960 0.40 +0.3 5,654,867 + AO356_24960 0.40 +0.7 5,654,867 + AO356_24960 0.40 +0.7 5,654,868 - AO356_24960 0.40 -0.6 5,655,017 + AO356_24960 0.56 +0.3 5,655,499 + +0.4 5,655,500 - +0.9 5,655,712 - AO356_24965 0.26 +1.2 5,655,712 - AO356_24965 0.26 +0.6 5,656,203 - +0.4 5,656,230 + +1.1 5,656,245 + -1.3 5,656,245 + -1.1 5,656,245 + -0.0 5,656,247 + -0.3 5,656,248 - +0.2 5,656,377 + -0.1 5,656,377 + -0.0 5,656,377 + -0.9 5,656,377 + -0.1 5,656,378 - +0.5 5,656,378 - -0.2 5,656,378 - +0.1 5,656,518 + AO356_24970 0.14 -0.5 5,656,519 - AO356_24970 0.14 -0.1 5,656,611 + AO356_24970 0.22 -0.8 5,656,611 + AO356_24970 0.22 +1.2 5,656,692 + AO356_24970 0.29 -0.3 5,656,692 + AO356_24970 0.29 -2.7 5,656,692 + AO356_24970 0.29 -0.1 5,656,692 + AO356_24970 0.29 -1.5 5,656,693 - AO356_24970 0.29 +0.6 5,656,693 - AO356_24970 0.29 +0.5 5,656,693 - AO356_24970 0.29 +0.6 5,656,847 + AO356_24970 0.42 -0.2 5,656,847 + AO356_24970 0.42 -0.7 5,656,848 - AO356_24970 0.43 +0.1 5,656,848 - AO356_24970 0.43 -0.7 5,656,883 + AO356_24970 0.46 -0.5 5,656,884 - AO356_24970 0.46 -0.5 5,657,165 - AO356_24970 0.70 +0.7 5,657,166 + AO356_24970 0.70 -0.1 5,657,166 + AO356_24970 0.70 -0.9 5,657,166 + AO356_24970 0.70 -0.9 5,657,167 - AO356_24970 0.70 +0.6
Or see this region's nucleotide sequence