Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24720 and AO356_24725 are separated by 195 nucleotides AO356_24725 and AO356_24730 are separated by 155 nucleotides AO356_24730 and AO356_24735 are separated by 205 nucleotides AO356_24735 and AO356_24740 overlap by 4 nucleotides
AO356_24720: AO356_24720 - DNA-binding protein, at 5,593,410 to 5,594,843
_24720
AO356_24725: AO356_24725 - alkylhydroperoxidase, at 5,595,039 to 5,595,479
_24725
AO356_24730: AO356_24730 - hypothetical protein, at 5,595,635 to 5,595,961
_24730
AO356_24735: AO356_24735 - TonB-dependent outer membrane receptor, at 5,596,167 to 5,596,799
_24735
AO356_24740: AO356_24740 - RNA polymerase subunit sigma-24, at 5,596,796 to 5,597,341
_24740
Position (kb) 5595
5596 Strain fitness (log2 ratio) -2
-1
0
1 at 5594.660 kb on - strand, within AO356_24720 at 5594.674 kb on + strand, within AO356_24720 at 5594.675 kb on - strand, within AO356_24720 at 5594.675 kb on - strand, within AO356_24720 at 5594.791 kb on + strand at 5594.917 kb on + strand at 5594.918 kb on - strand at 5594.918 kb on - strand at 5595.060 kb on + strand at 5595.060 kb on + strand at 5595.061 kb on - strand at 5595.061 kb on - strand at 5595.061 kb on - strand at 5595.246 kb on + strand, within AO356_24725 at 5595.360 kb on + strand, within AO356_24725 at 5595.360 kb on + strand, within AO356_24725 at 5595.361 kb on - strand, within AO356_24725 at 5595.688 kb on + strand, within AO356_24730 at 5595.689 kb on - strand, within AO356_24730 at 5595.841 kb on - strand, within AO356_24730 at 5595.856 kb on - strand, within AO356_24730 at 5596.014 kb on + strand at 5596.015 kb on - strand at 5596.036 kb on - strand at 5596.401 kb on + strand, within AO356_24735 at 5596.402 kb on - strand, within AO356_24735 at 5596.494 kb on + strand, within AO356_24735 at 5596.531 kb on + strand, within AO356_24735 at 5596.531 kb on + strand, within AO356_24735 at 5596.531 kb on + strand, within AO356_24735 at 5596.532 kb on - strand, within AO356_24735 at 5596.844 kb on + strand at 5596.845 kb on - strand at 5596.920 kb on - strand, within AO356_24740
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,594,660 - AO356_24720 0.87 +1.1 5,594,674 + AO356_24720 0.88 +1.6 5,594,675 - AO356_24720 0.88 -0.1 5,594,675 - AO356_24720 0.88 +0.7 5,594,791 + -0.1 5,594,917 + -1.6 5,594,918 - +0.6 5,594,918 - +0.4 5,595,060 + -0.0 5,595,060 + -0.3 5,595,061 - -0.8 5,595,061 - +0.1 5,595,061 - +0.8 5,595,246 + AO356_24725 0.47 +0.4 5,595,360 + AO356_24725 0.73 -0.5 5,595,360 + AO356_24725 0.73 -2.1 5,595,361 - AO356_24725 0.73 -0.9 5,595,688 + AO356_24730 0.16 -1.4 5,595,689 - AO356_24730 0.17 +0.5 5,595,841 - AO356_24730 0.63 -0.1 5,595,856 - AO356_24730 0.68 +0.1 5,596,014 + -0.3 5,596,015 - +0.3 5,596,036 - -0.4 5,596,401 + AO356_24735 0.37 -0.5 5,596,402 - AO356_24735 0.37 -0.4 5,596,494 + AO356_24735 0.52 -0.0 5,596,531 + AO356_24735 0.58 +0.4 5,596,531 + AO356_24735 0.58 +0.1 5,596,531 + AO356_24735 0.58 +0.1 5,596,532 - AO356_24735 0.58 -0.0 5,596,844 + -0.3 5,596,845 - +1.0 5,596,920 - AO356_24740 0.23 -0.5
Or see this region's nucleotide sequence