Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22210 and AO356_22215 overlap by 4 nucleotides AO356_22215 and AO356_22220 overlap by 4 nucleotides AO356_22220 and AO356_22225 overlap by 1 nucleotides AO356_22225 and AO356_22230 overlap by 1 nucleotides AO356_22230 and AO356_22235 are separated by 267 nucleotides AO356_22235 and AO356_22240 are separated by 2 nucleotides
AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247
_22210
AO356_22215: AO356_22215 - sulfur relay protein TusE, at 4,973,244 to 4,973,579
_22215
AO356_22220: AO356_22220 - sulfur relay protein DsrH, at 4,973,576 to 4,973,869
_22220
AO356_22225: AO356_22225 - sulfur relay protein TusC, at 4,973,869 to 4,974,231
_22225
AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623
_22230
AO356_22235: AO356_22235 - DNA repair protein, at 4,974,891 to 4,975,226
_22235
AO356_22240: AO356_22240 - hypothetical protein, at 4,975,229 to 4,975,489
_22240
Position (kb) 4974
4975 Strain fitness (log2 ratio) -1
0
1 at 4974.657 kb on - strand at 4974.700 kb on - strand at 4974.711 kb on + strand at 4974.711 kb on + strand at 4974.711 kb on + strand at 4974.712 kb on - strand at 4974.712 kb on - strand at 4974.725 kb on + strand at 4974.726 kb on - strand at 4974.753 kb on + strand at 4974.753 kb on + strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.925 kb on + strand, within AO356_22235 at 4974.926 kb on - strand, within AO356_22235 at 4974.926 kb on - strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.966 kb on - strand, within AO356_22235 at 4974.966 kb on - strand, within AO356_22235 at 4975.096 kb on + strand, within AO356_22235 at 4975.097 kb on - strand, within AO356_22235 at 4975.308 kb on + strand, within AO356_22240 at 4975.308 kb on + strand, within AO356_22240 at 4975.308 kb on + strand, within AO356_22240 at 4975.309 kb on - strand, within AO356_22240 at 4975.309 kb on - strand, within AO356_22240 at 4975.365 kb on + strand, within AO356_22240 at 4975.366 kb on - strand, within AO356_22240 at 4975.449 kb on + strand, within AO356_22240 at 4975.450 kb on - strand, within AO356_22240 at 4975.450 kb on - strand, within AO356_22240 at 4975.467 kb on + strand at 4975.468 kb on - strand at 4975.468 kb on - strand at 4975.468 kb on - strand at 4975.566 kb on + strand at 4975.597 kb on + strand at 4975.598 kb on - strand at 4975.598 kb on - strand at 4975.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 4,974,657 - -0.3 4,974,700 - +0.4 4,974,711 + -0.5 4,974,711 + +0.1 4,974,711 + +0.5 4,974,712 - +0.1 4,974,712 - +0.8 4,974,725 + -0.3 4,974,726 - +0.5 4,974,753 + -0.1 4,974,753 + -0.7 4,974,754 - +0.3 4,974,754 - -0.3 4,974,754 - -0.0 4,974,754 - +0.6 4,974,754 - +0.6 4,974,754 - -0.9 4,974,925 + AO356_22235 0.10 +0.1 4,974,926 - AO356_22235 0.10 +0.1 4,974,926 - AO356_22235 0.10 -0.5 4,974,965 + AO356_22235 0.22 -1.0 4,974,965 + AO356_22235 0.22 -0.8 4,974,965 + AO356_22235 0.22 -0.3 4,974,965 + AO356_22235 0.22 +0.0 4,974,965 + AO356_22235 0.22 +0.4 4,974,965 + AO356_22235 0.22 +0.3 4,974,966 - AO356_22235 0.22 -0.8 4,974,966 - AO356_22235 0.22 -0.7 4,975,096 + AO356_22235 0.61 -0.3 4,975,097 - AO356_22235 0.61 -0.5 4,975,308 + AO356_22240 0.30 -0.1 4,975,308 + AO356_22240 0.30 +0.9 4,975,308 + AO356_22240 0.30 +0.0 4,975,309 - AO356_22240 0.31 +0.6 4,975,309 - AO356_22240 0.31 +0.4 4,975,365 + AO356_22240 0.52 -0.2 4,975,366 - AO356_22240 0.52 +1.0 4,975,449 + AO356_22240 0.84 -0.4 4,975,450 - AO356_22240 0.85 +0.4 4,975,450 - AO356_22240 0.85 -0.1 4,975,467 + +0.4 4,975,468 - +0.8 4,975,468 - -0.3 4,975,468 - +0.1 4,975,566 + +0.0 4,975,597 + -0.3 4,975,598 - -0.6 4,975,598 - -0.7 4,975,598 - +0.1
Or see this region's nucleotide sequence