Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11970

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11965 and AO356_11970 are separated by 122 nucleotidesAO356_11970 and AO356_11975 are separated by 279 nucleotides AO356_11965: AO356_11965 - pyridoxamine kinase, at 2,711,328 to 2,712,200 _11965 AO356_11970: AO356_11970 - acyl-CoA hydrolase, at 2,712,323 to 2,712,808 _11970 AO356_11975: AO356_11975 - potassium transporter, at 2,713,088 to 2,714,851 _11975 Position (kb) 2712 2713Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2711.336 kb on + strandat 2711.336 kb on + strandat 2711.336 kb on + strandat 2711.337 kb on - strandat 2711.337 kb on - strandat 2711.337 kb on - strandat 2711.337 kb on - strandat 2711.337 kb on - strandat 2711.337 kb on - strandat 2711.445 kb on - strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.524 kb on + strand, within AO356_11965at 2711.525 kb on - strand, within AO356_11965at 2711.525 kb on - strand, within AO356_11965at 2711.525 kb on - strand, within AO356_11965at 2711.525 kb on - strand, within AO356_11965at 2711.658 kb on + strand, within AO356_11965at 2711.658 kb on + strand, within AO356_11965at 2711.658 kb on + strand, within AO356_11965at 2711.658 kb on + strand, within AO356_11965at 2711.659 kb on - strand, within AO356_11965at 2711.659 kb on - strand, within AO356_11965at 2711.889 kb on + strand, within AO356_11965at 2712.113 kb on + strandat 2712.120 kb on + strandat 2712.120 kb on + strandat 2712.324 kb on + strandat 2712.325 kb on - strandat 2712.526 kb on + strand, within AO356_11970at 2712.576 kb on + strand, within AO356_11970at 2712.576 kb on + strand, within AO356_11970at 2712.576 kb on + strand, within AO356_11970at 2712.576 kb on + strand, within AO356_11970at 2712.576 kb on + strand, within AO356_11970at 2712.577 kb on - strand, within AO356_11970at 2712.577 kb on - strand, within AO356_11970at 2712.577 kb on - strand, within AO356_11970at 2712.663 kb on + strand, within AO356_11970at 2712.664 kb on - strand, within AO356_11970at 2712.664 kb on - strand, within AO356_11970at 2712.693 kb on + strand, within AO356_11970at 2712.694 kb on - strand, within AO356_11970at 2712.694 kb on - strand, within AO356_11970at 2712.711 kb on + strand, within AO356_11970at 2712.711 kb on + strand, within AO356_11970at 2712.711 kb on + strand, within AO356_11970at 2712.711 kb on + strand, within AO356_11970at 2712.711 kb on + strand, within AO356_11970at 2712.712 kb on - strand, within AO356_11970at 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.813 kb on + strandat 2712.814 kb on - strandat 2712.814 kb on - strandat 2712.814 kb on - strandat 2712.814 kb on - strandat 2712.814 kb on - strandat 2712.859 kb on + strandat 2712.860 kb on - strandat 2712.891 kb on + strandat 2712.891 kb on + strandat 2712.958 kb on + strandat 2712.958 kb on + strandat 2712.958 kb on + strandat 2712.958 kb on + strandat 2712.958 kb on + strandat 2712.958 kb on + strandat 2712.959 kb on - strandat 2712.959 kb on - strandat 2712.959 kb on - strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.960 kb on + strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.961 kb on - strandat 2712.994 kb on + strandat 2713.027 kb on + strandat 2713.027 kb on + strandat 2713.028 kb on - strandat 2713.028 kb on - strandat 2713.028 kb on - strandat 2713.152 kb on + strandat 2713.152 kb on + strandat 2713.152 kb on + strandat 2713.152 kb on + strandat 2713.152 kb on + strandat 2713.152 kb on + strandat 2713.153 kb on - strandat 2713.153 kb on - strandat 2713.153 kb on - strandat 2713.153 kb on - strandat 2713.153 kb on - strandat 2713.182 kb on + strandat 2713.190 kb on + strandat 2713.190 kb on + strandat 2713.191 kb on - strandat 2713.191 kb on - strandat 2713.191 kb on - strandat 2713.191 kb on - strandat 2713.241 kb on - strandat 2713.718 kb on + strand, within AO356_11975at 2713.718 kb on + strand, within AO356_11975at 2713.761 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975at 2713.808 kb on + strand, within AO356_11975

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,711,336 + -0.5
2,711,336 + -1.4
2,711,336 + +0.2
2,711,337 - +1.5
2,711,337 - +0.3
2,711,337 - -0.2
2,711,337 - -0.5
2,711,337 - +0.2
2,711,337 - +1.8
2,711,445 - AO356_11965 0.13 +0.9
2,711,524 + AO356_11965 0.22 -0.1
2,711,524 + AO356_11965 0.22 +0.3
2,711,524 + AO356_11965 0.22 +0.4
2,711,524 + AO356_11965 0.22 -1.1
2,711,524 + AO356_11965 0.22 +0.3
2,711,524 + AO356_11965 0.22 +0.5
2,711,524 + AO356_11965 0.22 -0.6
2,711,524 + AO356_11965 0.22 +0.4
2,711,524 + AO356_11965 0.22 +1.3
2,711,524 + AO356_11965 0.22 +0.9
2,711,524 + AO356_11965 0.22 -0.3
2,711,524 + AO356_11965 0.22 +0.3
2,711,524 + AO356_11965 0.22 -1.6
2,711,524 + AO356_11965 0.22 +1.5
2,711,524 + AO356_11965 0.22 -0.3
2,711,525 - AO356_11965 0.23 -0.3
2,711,525 - AO356_11965 0.23 +1.0
2,711,525 - AO356_11965 0.23 +0.9
2,711,525 - AO356_11965 0.23 +0.7
2,711,658 + AO356_11965 0.38 -0.5
2,711,658 + AO356_11965 0.38 +0.4
2,711,658 + AO356_11965 0.38 +0.2
2,711,658 + AO356_11965 0.38 -0.1
2,711,659 - AO356_11965 0.38 +0.5
2,711,659 - AO356_11965 0.38 -0.4
2,711,889 + AO356_11965 0.64 -0.9
2,712,113 + -0.3
2,712,120 + +0.8
2,712,120 + -0.2
2,712,324 + -0.4
2,712,325 - -1.3
2,712,526 + AO356_11970 0.42 +0.5
2,712,576 + AO356_11970 0.52 +0.2
2,712,576 + AO356_11970 0.52 -0.6
2,712,576 + AO356_11970 0.52 +0.1
2,712,576 + AO356_11970 0.52 +0.9
2,712,576 + AO356_11970 0.52 +0.5
2,712,577 - AO356_11970 0.52 +0.7
2,712,577 - AO356_11970 0.52 +0.6
2,712,577 - AO356_11970 0.52 +1.0
2,712,663 + AO356_11970 0.70 +0.5
2,712,664 - AO356_11970 0.70 +0.4
2,712,664 - AO356_11970 0.70 -0.1
2,712,693 + AO356_11970 0.76 -0.1
2,712,694 - AO356_11970 0.76 +0.5
2,712,694 - AO356_11970 0.76 -1.7
2,712,711 + AO356_11970 0.80 +1.1
2,712,711 + AO356_11970 0.80 -0.1
2,712,711 + AO356_11970 0.80 -0.6
2,712,711 + AO356_11970 0.80 +0.3
2,712,711 + AO356_11970 0.80 +0.8
2,712,712 - AO356_11970 0.80 -0.1
2,712,813 + -0.7
2,712,813 + +0.5
2,712,813 + +0.8
2,712,813 + -0.4
2,712,813 + +2.5
2,712,813 + +1.1
2,712,813 + -0.4
2,712,813 + -1.3
2,712,813 + +0.2
2,712,813 + -0.4
2,712,813 + +1.1
2,712,813 + -0.8
2,712,814 - -0.5
2,712,814 - -0.6
2,712,814 - -1.2
2,712,814 - +0.8
2,712,814 - -0.6
2,712,859 + +2.9
2,712,860 - -0.2
2,712,891 + +0.9
2,712,891 + +0.2
2,712,958 + +0.6
2,712,958 + +1.1
2,712,958 + +0.2
2,712,958 + -0.2
2,712,958 + +1.2
2,712,958 + -0.6
2,712,959 - -0.5
2,712,959 - -0.4
2,712,959 - +0.9
2,712,960 + -0.6
2,712,960 + +0.7
2,712,960 + +0.6
2,712,960 + +0.0
2,712,960 + -0.4
2,712,960 + +0.7
2,712,960 + +0.5
2,712,960 + -0.4
2,712,960 + +0.3
2,712,960 + +0.5
2,712,960 + -0.0
2,712,960 + +0.2
2,712,960 + +1.0
2,712,961 - -0.3
2,712,961 - -0.6
2,712,961 - +0.8
2,712,961 - +1.0
2,712,961 - -0.3
2,712,961 - +0.2
2,712,961 - +0.1
2,712,961 - -0.8
2,712,961 - -0.3
2,712,961 - -0.2
2,712,961 - +0.2
2,712,961 - -0.5
2,712,994 + +0.5
2,713,027 + +0.9
2,713,027 + -0.2
2,713,028 - -0.6
2,713,028 - +2.2
2,713,028 - +0.3
2,713,152 + +0.2
2,713,152 + +0.2
2,713,152 + -1.2
2,713,152 + +0.6
2,713,152 + -0.1
2,713,152 + +0.6
2,713,153 - -1.1
2,713,153 - -0.4
2,713,153 - +0.4
2,713,153 - -0.1
2,713,153 - -0.1
2,713,182 + +0.2
2,713,190 + +0.1
2,713,190 + -0.1
2,713,191 - +0.1
2,713,191 - -0.0
2,713,191 - -0.1
2,713,191 - -0.5
2,713,241 - +0.6
2,713,718 + AO356_11975 0.36 -0.2
2,713,718 + AO356_11975 0.36 +1.1
2,713,761 + AO356_11975 0.38 +0.2
2,713,808 + AO356_11975 0.41 +0.4
2,713,808 + AO356_11975 0.41 +0.1
2,713,808 + AO356_11975 0.41 +0.2
2,713,808 + AO356_11975 0.41 +0.7
2,713,808 + AO356_11975 0.41 +0.3
2,713,808 + AO356_11975 0.41 +0.1
2,713,808 + AO356_11975 0.41 -0.5
2,713,808 + AO356_11975 0.41 -2.1
2,713,808 + AO356_11975 0.41 -0.2

Or see this region's nucleotide sequence