Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00760

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00755 and AO356_00760 are separated by 183 nucleotidesAO356_00760 and AO356_00765 are separated by 143 nucleotides AO356_00755: AO356_00755 - ABC transporter ATP-binding protein, at 166,986 to 169,709 _00755 AO356_00760: AO356_00760 - sugar ABC transporter permease, at 169,893 to 170,711 _00760 AO356_00765: AO356_00765 - glycosyl transferase, at 170,855 to 173,302 _00765 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1at 169.051 kb on + strand, within AO356_00755at 169.051 kb on + strand, within AO356_00755at 169.051 kb on + strand, within AO356_00755at 169.275 kb on - strand, within AO356_00755at 169.275 kb on - strand, within AO356_00755at 169.375 kb on + strand, within AO356_00755at 169.632 kb on + strandat 169.632 kb on + strandat 169.632 kb on + strandat 169.632 kb on + strandat 169.633 kb on - strandat 169.654 kb on + strandat 169.654 kb on + strandat 169.655 kb on - strandat 169.655 kb on - strandat 169.655 kb on - strandat 169.788 kb on + strandat 169.788 kb on + strandat 169.789 kb on - strandat 169.789 kb on - strandat 169.823 kb on + strandat 169.824 kb on - strandat 169.836 kb on - strandat 169.959 kb on + strandat 169.959 kb on + strandat 169.960 kb on - strandat 169.960 kb on - strandat 169.960 kb on - strandat 169.960 kb on - strandat 169.993 kb on - strand, within AO356_00760at 170.017 kb on + strand, within AO356_00760at 170.017 kb on + strand, within AO356_00760at 170.017 kb on + strand, within AO356_00760at 170.018 kb on - strand, within AO356_00760at 170.018 kb on - strand, within AO356_00760at 170.018 kb on - strand, within AO356_00760at 170.056 kb on - strand, within AO356_00760at 170.207 kb on + strand, within AO356_00760at 170.214 kb on + strand, within AO356_00760at 170.214 kb on + strand, within AO356_00760at 170.214 kb on + strand, within AO356_00760at 170.214 kb on + strand, within AO356_00760at 170.214 kb on + strand, within AO356_00760at 170.215 kb on - strand, within AO356_00760at 170.215 kb on - strand, within AO356_00760at 170.316 kb on + strand, within AO356_00760at 170.316 kb on + strand, within AO356_00760at 170.317 kb on - strand, within AO356_00760at 170.317 kb on - strand, within AO356_00760at 170.317 kb on - strand, within AO356_00760at 170.527 kb on - strand, within AO356_00760at 170.527 kb on - strand, within AO356_00760at 170.527 kb on - strand, within AO356_00760at 170.527 kb on - strand, within AO356_00760at 170.629 kb on - strand, within AO356_00760at 170.629 kb on - strand, within AO356_00760at 170.707 kb on + strandat 170.708 kb on - strandat 170.830 kb on - strandat 171.252 kb on - strand, within AO356_00765at 171.253 kb on + strand, within AO356_00765at 171.254 kb on - strand, within AO356_00765at 171.254 kb on - strand, within AO356_00765at 171.272 kb on + strand, within AO356_00765at 171.543 kb on - strand, within AO356_00765at 171.543 kb on - strand, within AO356_00765at 171.544 kb on + strand, within AO356_00765at 171.656 kb on + strand, within AO356_00765at 171.656 kb on + strand, within AO356_00765at 171.656 kb on + strand, within AO356_00765at 171.656 kb on + strand, within AO356_00765at 171.656 kb on + strand, within AO356_00765at 171.657 kb on - strand, within AO356_00765at 171.657 kb on - strand, within AO356_00765at 171.657 kb on - strand, within AO356_00765at 171.657 kb on - strand, within AO356_00765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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169,051 + AO356_00755 0.76 -0.3
169,051 + AO356_00755 0.76 -0.5
169,051 + AO356_00755 0.76 +0.5
169,275 - AO356_00755 0.84 -0.2
169,275 - AO356_00755 0.84 +0.4
169,375 + AO356_00755 0.88 +0.1
169,632 + -0.4
169,632 + +0.1
169,632 + +0.1
169,632 + -0.3
169,633 - -0.4
169,654 + +0.3
169,654 + -0.1
169,655 - -0.0
169,655 - -0.2
169,655 - -1.4
169,788 + -1.2
169,788 + +0.6
169,789 - -0.3
169,789 - +0.5
169,823 + +0.7
169,824 - -0.3
169,836 - -0.4
169,959 + +0.8
169,959 + +0.8
169,960 - -0.1
169,960 - +0.6
169,960 - -1.7
169,960 - -0.0
169,993 - AO356_00760 0.12 -1.2
170,017 + AO356_00760 0.15 +0.1
170,017 + AO356_00760 0.15 +1.4
170,017 + AO356_00760 0.15 +0.3
170,018 - AO356_00760 0.15 +0.2
170,018 - AO356_00760 0.15 +0.4
170,018 - AO356_00760 0.15 +0.6
170,056 - AO356_00760 0.20 +0.3
170,207 + AO356_00760 0.38 +0.8
170,214 + AO356_00760 0.39 +0.6
170,214 + AO356_00760 0.39 +1.6
170,214 + AO356_00760 0.39 +0.9
170,214 + AO356_00760 0.39 +1.0
170,214 + AO356_00760 0.39 -0.4
170,215 - AO356_00760 0.39 -0.2
170,215 - AO356_00760 0.39 -0.0
170,316 + AO356_00760 0.52 -0.3
170,316 + AO356_00760 0.52 +0.2
170,317 - AO356_00760 0.52 -0.4
170,317 - AO356_00760 0.52 +0.3
170,317 - AO356_00760 0.52 +0.4
170,527 - AO356_00760 0.77 +1.1
170,527 - AO356_00760 0.77 -0.0
170,527 - AO356_00760 0.77 +0.3
170,527 - AO356_00760 0.77 -0.1
170,629 - AO356_00760 0.90 +0.1
170,629 - AO356_00760 0.90 +1.1
170,707 + -2.0
170,708 - -0.4
170,830 - -0.4
171,252 - AO356_00765 0.16 +1.1
171,253 + AO356_00765 0.16 -1.2
171,254 - AO356_00765 0.16 -0.4
171,254 - AO356_00765 0.16 -0.5
171,272 + AO356_00765 0.17 +0.4
171,543 - AO356_00765 0.28 +0.3
171,543 - AO356_00765 0.28 +1.0
171,544 + AO356_00765 0.28 -0.1
171,656 + AO356_00765 0.33 -2.6
171,656 + AO356_00765 0.33 -0.4
171,656 + AO356_00765 0.33 +0.3
171,656 + AO356_00765 0.33 +0.9
171,656 + AO356_00765 0.33 +0.8
171,657 - AO356_00765 0.33 +0.4
171,657 - AO356_00765 0.33 +0.8
171,657 - AO356_00765 0.33 -0.1
171,657 - AO356_00765 0.33 +0.3

Or see this region's nucleotide sequence