Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04347 and SMc04451 are separated by 54 nucleotides SMc04451 and SMc04161 are separated by 77 nucleotides SMc04161 and SMc04162 are separated by 31 nucleotides
SMc04347: SMc04347 - hypothetical protein, at 2,148,478 to 2,150,529
SMc04347
SMc04451: SMc04451 - chloramphenicol phosphotransferase, at 2,150,584 to 2,151,246
SMc04451
SMc04161: SMc04161 - hypothetical protein, at 2,151,324 to 2,151,794
SMc04161
SMc04162: SMc04162 - transcriptional regulator, at 2,151,826 to 2,152,155
SMc04162
Position (kb)
2150
2151
2152 Strain fitness (log2 ratio)
-1
0
1 at 2149.826 kb on + strand, within SMc04347 at 2149.936 kb on + strand, within SMc04347 at 2150.030 kb on - strand, within SMc04347 at 2150.030 kb on - strand, within SMc04347 at 2150.077 kb on - strand, within SMc04347 at 2150.111 kb on - strand, within SMc04347 at 2150.354 kb on + strand at 2150.355 kb on - strand at 2150.355 kb on - strand at 2150.714 kb on - strand, within SMc04451 at 2150.714 kb on - strand, within SMc04451 at 2150.714 kb on - strand, within SMc04451 at 2150.714 kb on - strand, within SMc04451 at 2150.726 kb on + strand, within SMc04451 at 2150.798 kb on + strand, within SMc04451 at 2150.798 kb on + strand, within SMc04451 at 2150.799 kb on - strand, within SMc04451 at 2150.799 kb on - strand, within SMc04451 at 2150.799 kb on - strand, within SMc04451 at 2150.810 kb on - strand, within SMc04451 at 2150.821 kb on + strand, within SMc04451 at 2151.028 kb on + strand, within SMc04451 at 2151.029 kb on - strand, within SMc04451 at 2151.106 kb on + strand, within SMc04451 at 2151.106 kb on + strand, within SMc04451 at 2151.107 kb on - strand, within SMc04451 at 2151.107 kb on - strand, within SMc04451 at 2151.107 kb on - strand, within SMc04451 at 2151.244 kb on + strand at 2151.344 kb on + strand at 2151.344 kb on + strand at 2151.346 kb on + strand at 2151.347 kb on - strand at 2151.746 kb on + strand, within SMc04161 at 2151.746 kb on + strand, within SMc04161 at 2151.746 kb on + strand, within SMc04161 at 2151.747 kb on - strand, within SMc04161 at 2151.747 kb on - strand, within SMc04161 at 2151.827 kb on + strand at 2151.828 kb on - strand at 2152.128 kb on + strand at 2152.129 kb on - strand at 2152.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 2,149,826 + SMc04347 0.66 -0.6 2,149,936 + SMc04347 0.71 +0.3 2,150,030 - SMc04347 0.76 -0.2 2,150,030 - SMc04347 0.76 +0.0 2,150,077 - SMc04347 0.78 -0.4 2,150,111 - SMc04347 0.80 -0.9 2,150,354 + +0.4 2,150,355 - +0.1 2,150,355 - +0.4 2,150,714 - SMc04451 0.20 +0.5 2,150,714 - SMc04451 0.20 -0.2 2,150,714 - SMc04451 0.20 -0.5 2,150,714 - SMc04451 0.20 +0.3 2,150,726 + SMc04451 0.21 +0.8 2,150,798 + SMc04451 0.32 -0.2 2,150,798 + SMc04451 0.32 +0.6 2,150,799 - SMc04451 0.32 -0.1 2,150,799 - SMc04451 0.32 +0.2 2,150,799 - SMc04451 0.32 -1.2 2,150,810 - SMc04451 0.34 -0.1 2,150,821 + SMc04451 0.36 -0.3 2,151,028 + SMc04451 0.67 -0.5 2,151,029 - SMc04451 0.67 -0.3 2,151,106 + SMc04451 0.79 -0.3 2,151,106 + SMc04451 0.79 +0.9 2,151,107 - SMc04451 0.79 +0.2 2,151,107 - SMc04451 0.79 -0.5 2,151,107 - SMc04451 0.79 -0.1 2,151,244 + -0.0 2,151,344 + -0.2 2,151,344 + +0.4 2,151,346 + -0.3 2,151,347 - +0.4 2,151,746 + SMc04161 0.90 -0.8 2,151,746 + SMc04161 0.90 +0.6 2,151,746 + SMc04161 0.90 +0.0 2,151,747 - SMc04161 0.90 +0.4 2,151,747 - SMc04161 0.90 +0.3 2,151,827 + +0.1 2,151,828 - -0.7 2,152,128 + +0.8 2,152,129 - +0.9 2,152,177 + -0.5
Or see this region's nucleotide sequence