Strain Fitness in Sinorhizobium meliloti 1021 around SMc03204

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03203 and SMc03204 are separated by 6 nucleotidesSMc03204 and SMc03205 are separated by 384 nucleotides SMc03203: SMc03203 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data), at 3,167,147 to 3,168,427 SMc03203 SMc03204: SMc03204 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data), at 3,168,434 to 3,169,828 SMc03204 SMc03205: SMc03205 - formyltetrahydrofolate deformylase, at 3,170,213 to 3,171,097 SMc03205 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3167.817 kb on - strand, within SMc03203at 3167.817 kb on - strand, within SMc03203at 3167.817 kb on - strand, within SMc03203at 3167.931 kb on + strand, within SMc03203at 3168.211 kb on + strand, within SMc03203at 3168.212 kb on - strand, within SMc03203at 3168.425 kb on + strandat 3168.426 kb on - strandat 3168.798 kb on + strand, within SMc03204at 3168.992 kb on - strand, within SMc03204at 3169.353 kb on - strand, within SMc03204at 3169.442 kb on - strand, within SMc03204at 3169.752 kb on + strandat 3169.752 kb on + strandat 3169.752 kb on + strandat 3169.753 kb on - strandat 3170.020 kb on - strandat 3170.143 kb on - strandat 3170.165 kb on + strandat 3170.169 kb on - strandat 3170.185 kb on + strandat 3170.186 kb on - strandat 3170.236 kb on - strandat 3170.788 kb on - strand, within SMc03205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,167,817 - SMc03203 0.52 -3.4
3,167,817 - SMc03203 0.52 -4.2
3,167,817 - SMc03203 0.52 -2.8
3,167,931 + SMc03203 0.61 -1.6
3,168,211 + SMc03203 0.83 -3.9
3,168,212 - SMc03203 0.83 -3.4
3,168,425 + -1.8
3,168,426 - -2.4
3,168,798 + SMc03204 0.26 -2.5
3,168,992 - SMc03204 0.40 -2.1
3,169,353 - SMc03204 0.66 -2.7
3,169,442 - SMc03204 0.72 -3.6
3,169,752 + -2.2
3,169,752 + -1.8
3,169,752 + -3.0
3,169,753 - -1.2
3,170,020 - +0.1
3,170,143 - -0.3
3,170,165 + +0.1
3,170,169 - -0.2
3,170,185 + +0.0
3,170,186 - +0.8
3,170,236 - +0.1
3,170,788 - SMc03205 0.65 +0.0

Or see this region's nucleotide sequence