Strain Fitness in Sinorhizobium meliloti 1021 around SMc02727

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02726 and SMc02727 are separated by 123 nucleotidesSMc02727 and SMc02728 are separated by 160 nucleotides SMc02726: SMc02726 - iron transport protein, at 2,576,060 to 2,578,291 SMc02726 SMc02727: SMc02727 - hypothetical protein, at 2,578,415 to 2,579,401 SMc02727 SMc02728: SMc02728 - formate--tetrahydrofolate ligase, at 2,579,562 to 2,581,241 SMc02728 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2577.690 kb on + strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.690 kb on + strand, within SMc02726at 2577.691 kb on - strand, within SMc02726at 2577.691 kb on - strand, within SMc02726at 2577.691 kb on - strand, within SMc02726at 2577.818 kb on + strand, within SMc02726at 2577.819 kb on - strand, within SMc02726at 2577.819 kb on - strand, within SMc02726at 2577.913 kb on + strand, within SMc02726at 2577.915 kb on + strand, within SMc02726at 2577.916 kb on - strand, within SMc02726at 2577.916 kb on - strand, within SMc02726at 2577.916 kb on - strand, within SMc02726at 2577.949 kb on + strand, within SMc02726at 2578.004 kb on + strand, within SMc02726at 2578.004 kb on + strand, within SMc02726at 2578.004 kb on + strand, within SMc02726at 2578.005 kb on - strandat 2578.005 kb on - strand, within SMc02726at 2578.241 kb on + strandat 2578.383 kb on - strandat 2578.383 kb on - strandat 2578.779 kb on + strand, within SMc02727at 2578.779 kb on + strand, within SMc02727at 2578.853 kb on + strand, within SMc02727at 2578.854 kb on - strand, within SMc02727at 2579.117 kb on + strand, within SMc02727at 2579.117 kb on + strand, within SMc02727at 2579.118 kb on - strand, within SMc02727at 2579.118 kb on - strand, within SMc02727at 2579.390 kb on + strandat 2579.407 kb on - strandat 2579.515 kb on + strandat 2579.516 kb on - strandat 2579.516 kb on - strandat 2579.554 kb on + strandat 2579.554 kb on + strandat 2579.554 kb on + strandat 2579.581 kb on + strandat 2579.761 kb on + strand, within SMc02728at 2579.761 kb on + strand, within SMc02728at 2579.798 kb on - strand, within SMc02728at 2579.866 kb on + strand, within SMc02728at 2579.866 kb on + strand, within SMc02728at 2579.866 kb on + strand, within SMc02728at 2579.867 kb on - strand, within SMc02728at 2579.921 kb on - strand, within SMc02728at 2579.971 kb on + strand, within SMc02728at 2579.971 kb on + strand, within SMc02728at 2579.971 kb on + strand, within SMc02728at 2579.972 kb on - strand, within SMc02728at 2580.050 kb on - strand, within SMc02728at 2580.050 kb on - strand, within SMc02728at 2580.050 kb on - strand, within SMc02728at 2580.256 kb on - strand, within SMc02728at 2580.345 kb on + strand, within SMc02728at 2580.345 kb on + strand, within SMc02728at 2580.352 kb on + strand, within SMc02728at 2580.353 kb on - strand, within SMc02728at 2580.353 kb on - strand, within SMc02728at 2580.353 kb on - strand, within SMc02728at 2580.353 kb on - strand, within SMc02728at 2580.353 kb on - strand, within SMc02728

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,577,690 + SMc02726 0.73 -1.4
2,577,690 + SMc02726 0.73 -0.4
2,577,690 + SMc02726 0.73 +0.0
2,577,690 + SMc02726 0.73 -0.2
2,577,691 - SMc02726 0.73 +0.3
2,577,691 - SMc02726 0.73 +0.1
2,577,691 - SMc02726 0.73 +0.4
2,577,818 + SMc02726 0.79 -0.5
2,577,819 - SMc02726 0.79 +3.6
2,577,819 - SMc02726 0.79 -0.0
2,577,913 + SMc02726 0.83 -0.6
2,577,915 + SMc02726 0.83 -0.0
2,577,916 - SMc02726 0.83 -0.0
2,577,916 - SMc02726 0.83 +0.5
2,577,916 - SMc02726 0.83 -0.5
2,577,949 + SMc02726 0.85 +0.3
2,578,004 + SMc02726 0.87 -0.5
2,578,004 + SMc02726 0.87 +0.2
2,578,004 + SMc02726 0.87 -0.1
2,578,005 - +1.6
2,578,005 - SMc02726 0.87 -1.3
2,578,241 + +0.4
2,578,383 - +0.2
2,578,383 - +1.3
2,578,779 + SMc02727 0.37 +0.6
2,578,779 + SMc02727 0.37 -1.4
2,578,853 + SMc02727 0.44 +1.0
2,578,854 - SMc02727 0.44 -0.1
2,579,117 + SMc02727 0.71 +0.0
2,579,117 + SMc02727 0.71 +0.5
2,579,118 - SMc02727 0.71 +0.9
2,579,118 - SMc02727 0.71 +0.7
2,579,390 + +0.1
2,579,407 - +0.4
2,579,515 + -0.1
2,579,516 - -0.0
2,579,516 - -0.2
2,579,554 + +1.1
2,579,554 + +0.1
2,579,554 + +0.5
2,579,581 + +0.0
2,579,761 + SMc02728 0.12 -0.4
2,579,761 + SMc02728 0.12 -0.2
2,579,798 - SMc02728 0.14 -0.4
2,579,866 + SMc02728 0.18 -0.6
2,579,866 + SMc02728 0.18 -0.3
2,579,866 + SMc02728 0.18 -1.7
2,579,867 - SMc02728 0.18 -0.0
2,579,921 - SMc02728 0.21 -0.1
2,579,971 + SMc02728 0.24 +0.0
2,579,971 + SMc02728 0.24 +0.3
2,579,971 + SMc02728 0.24 -0.9
2,579,972 - SMc02728 0.24 -1.1
2,580,050 - SMc02728 0.29 -0.3
2,580,050 - SMc02728 0.29 -0.3
2,580,050 - SMc02728 0.29 -0.0
2,580,256 - SMc02728 0.41 +0.1
2,580,345 + SMc02728 0.47 +0.1
2,580,345 + SMc02728 0.47 +0.5
2,580,352 + SMc02728 0.47 -2.2
2,580,353 - SMc02728 0.47 +0.1
2,580,353 - SMc02728 0.47 -0.1
2,580,353 - SMc02728 0.47 -0.6
2,580,353 - SMc02728 0.47 -0.1
2,580,353 - SMc02728 0.47 -0.2

Or see this region's nucleotide sequence