Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02726 and SMc02727 are separated by 123 nucleotides SMc02727 and SMc02728 are separated by 160 nucleotides
SMc02726: SMc02726 - iron transport protein, at 2,576,060 to 2,578,291
SMc02726
SMc02727: SMc02727 - hypothetical protein, at 2,578,415 to 2,579,401
SMc02727
SMc02728: SMc02728 - formate--tetrahydrofolate ligase, at 2,579,562 to 2,581,241
SMc02728
Position (kb)
2578
2579
2580 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2577.690 kb on + strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.690 kb on + strand, within SMc02726 at 2577.691 kb on - strand, within SMc02726 at 2577.691 kb on - strand, within SMc02726 at 2577.691 kb on - strand, within SMc02726 at 2577.818 kb on + strand, within SMc02726 at 2577.819 kb on - strand, within SMc02726 at 2577.819 kb on - strand, within SMc02726 at 2577.913 kb on + strand, within SMc02726 at 2577.915 kb on + strand, within SMc02726 at 2577.916 kb on - strand, within SMc02726 at 2577.916 kb on - strand, within SMc02726 at 2577.916 kb on - strand, within SMc02726 at 2577.949 kb on + strand, within SMc02726 at 2578.004 kb on + strand, within SMc02726 at 2578.004 kb on + strand, within SMc02726 at 2578.004 kb on + strand, within SMc02726 at 2578.005 kb on - strand at 2578.005 kb on - strand, within SMc02726 at 2578.241 kb on + strand at 2578.383 kb on - strand at 2578.383 kb on - strand at 2578.779 kb on + strand, within SMc02727 at 2578.779 kb on + strand, within SMc02727 at 2578.853 kb on + strand, within SMc02727 at 2578.854 kb on - strand, within SMc02727 at 2579.117 kb on + strand, within SMc02727 at 2579.117 kb on + strand, within SMc02727 at 2579.118 kb on - strand, within SMc02727 at 2579.118 kb on - strand, within SMc02727 at 2579.390 kb on + strand at 2579.407 kb on - strand at 2579.515 kb on + strand at 2579.516 kb on - strand at 2579.516 kb on - strand at 2579.554 kb on + strand at 2579.554 kb on + strand at 2579.554 kb on + strand at 2579.581 kb on + strand at 2579.761 kb on + strand, within SMc02728 at 2579.761 kb on + strand, within SMc02728 at 2579.798 kb on - strand, within SMc02728 at 2579.866 kb on + strand, within SMc02728 at 2579.866 kb on + strand, within SMc02728 at 2579.866 kb on + strand, within SMc02728 at 2579.867 kb on - strand, within SMc02728 at 2579.921 kb on - strand, within SMc02728 at 2579.971 kb on + strand, within SMc02728 at 2579.971 kb on + strand, within SMc02728 at 2579.971 kb on + strand, within SMc02728 at 2579.972 kb on - strand, within SMc02728 at 2580.050 kb on - strand, within SMc02728 at 2580.050 kb on - strand, within SMc02728 at 2580.050 kb on - strand, within SMc02728 at 2580.256 kb on - strand, within SMc02728 at 2580.345 kb on + strand, within SMc02728 at 2580.345 kb on + strand, within SMc02728 at 2580.352 kb on + strand, within SMc02728 at 2580.353 kb on - strand, within SMc02728 at 2580.353 kb on - strand, within SMc02728 at 2580.353 kb on - strand, within SMc02728 at 2580.353 kb on - strand, within SMc02728 at 2580.353 kb on - strand, within SMc02728
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 2,577,690 + SMc02726 0.73 -1.4 2,577,690 + SMc02726 0.73 -0.4 2,577,690 + SMc02726 0.73 +0.0 2,577,690 + SMc02726 0.73 -0.2 2,577,691 - SMc02726 0.73 +0.3 2,577,691 - SMc02726 0.73 +0.1 2,577,691 - SMc02726 0.73 +0.4 2,577,818 + SMc02726 0.79 -0.5 2,577,819 - SMc02726 0.79 +3.6 2,577,819 - SMc02726 0.79 -0.0 2,577,913 + SMc02726 0.83 -0.6 2,577,915 + SMc02726 0.83 -0.0 2,577,916 - SMc02726 0.83 -0.0 2,577,916 - SMc02726 0.83 +0.5 2,577,916 - SMc02726 0.83 -0.5 2,577,949 + SMc02726 0.85 +0.3 2,578,004 + SMc02726 0.87 -0.5 2,578,004 + SMc02726 0.87 +0.2 2,578,004 + SMc02726 0.87 -0.1 2,578,005 - +1.6 2,578,005 - SMc02726 0.87 -1.3 2,578,241 + +0.4 2,578,383 - +0.2 2,578,383 - +1.3 2,578,779 + SMc02727 0.37 +0.6 2,578,779 + SMc02727 0.37 -1.4 2,578,853 + SMc02727 0.44 +1.0 2,578,854 - SMc02727 0.44 -0.1 2,579,117 + SMc02727 0.71 +0.0 2,579,117 + SMc02727 0.71 +0.5 2,579,118 - SMc02727 0.71 +0.9 2,579,118 - SMc02727 0.71 +0.7 2,579,390 + +0.1 2,579,407 - +0.4 2,579,515 + -0.1 2,579,516 - -0.0 2,579,516 - -0.2 2,579,554 + +1.1 2,579,554 + +0.1 2,579,554 + +0.5 2,579,581 + +0.0 2,579,761 + SMc02728 0.12 -0.4 2,579,761 + SMc02728 0.12 -0.2 2,579,798 - SMc02728 0.14 -0.4 2,579,866 + SMc02728 0.18 -0.6 2,579,866 + SMc02728 0.18 -0.3 2,579,866 + SMc02728 0.18 -1.7 2,579,867 - SMc02728 0.18 -0.0 2,579,921 - SMc02728 0.21 -0.1 2,579,971 + SMc02728 0.24 +0.0 2,579,971 + SMc02728 0.24 +0.3 2,579,971 + SMc02728 0.24 -0.9 2,579,972 - SMc02728 0.24 -1.1 2,580,050 - SMc02728 0.29 -0.3 2,580,050 - SMc02728 0.29 -0.3 2,580,050 - SMc02728 0.29 -0.0 2,580,256 - SMc02728 0.41 +0.1 2,580,345 + SMc02728 0.47 +0.1 2,580,345 + SMc02728 0.47 +0.5 2,580,352 + SMc02728 0.47 -2.2 2,580,353 - SMc02728 0.47 +0.1 2,580,353 - SMc02728 0.47 -0.1 2,580,353 - SMc02728 0.47 -0.6 2,580,353 - SMc02728 0.47 -0.1 2,580,353 - SMc02728 0.47 -0.2
Or see this region's nucleotide sequence