Strain Fitness in Sinorhizobium meliloti 1021 around SMc02483

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02485 and SMc02484 overlap by 1 nucleotidesSMc02484 and SMc02483 are separated by 255 nucleotidesSMc02483 and SMc02482 are separated by 122 nucleotides SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806 SMc02485 SMc02484: SMc02484 - amino acid efflux transmembrane protein, at 3,310,806 to 3,311,450 SMc02484 SMc02483: SMc02483 - dihydrolipoamide succinyltransferase, at 3,311,706 to 3,312,959 SMc02483 SMc02482: SMc02482 - 2-oxoglutarate dehydrogenase E1 component, at 3,313,082 to 3,316,078 SMc02482 Position (kb) 3311 3312 3313Strain fitness (log2 ratio) -1 0 1at 3311.237 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.441 kb on - strandat 3311.469 kb on - strandat 3311.518 kb on - strandat 3311.692 kb on - strandat 3312.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,311,237 - SMc02484 0.67 -0.3
3,311,279 - SMc02484 0.73 -0.2
3,311,279 - SMc02484 0.73 -1.1
3,311,279 - SMc02484 0.73 -1.7
3,311,279 - SMc02484 0.73 -0.3
3,311,441 - -0.1
3,311,469 - +0.2
3,311,518 - -0.0
3,311,692 - -0.6
3,312,993 - +0.1

Or see this region's nucleotide sequence