Strain Fitness in Sinorhizobium meliloti 1021 around SMc02465

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02467 and SMc02466 are separated by 150 nucleotidesSMc02466 and SMc02465 are separated by 18 nucleotidesSMc02465 and SMc02464 are separated by 7 nucleotidesSMc02464 and SMc02463 are separated by 10 nucleotides SMc02467: SMc02467 - peptide methionine sulfoxide reductase, at 3,330,083 to 3,330,679 SMc02467 SMc02466: SMc02466 - succinate dehydrogenase iron-sulfur subunit, at 3,330,830 to 3,331,609 SMc02466 SMc02465: SMc02465 - succinate dehydrogenase flavoprotein subunit, at 3,331,628 to 3,333,469 SMc02465 SMc02464: SMc02464 - succinate dehydrogenase membrane anchor subunit protein, at 3,333,477 to 3,333,857 SMc02464 SMc02463: SMc02463 - succinate dehydrogenase cytochrome B-556 subunit transmembrane protein, at 3,333,868 to 3,334,260 SMc02463 Position (kb) 3331 3332 3333 3334Strain fitness (log2 ratio) -2 -1 0 1at 3330.701 kb on + strandat 3330.705 kb on - strandat 3330.709 kb on - strandat 3330.709 kb on - strandat 3330.709 kb on - strandat 3330.709 kb on - strandat 3330.739 kb on - strandat 3330.739 kb on - strandat 3333.479 kb on - strandat 3334.366 kb on - strandat 3334.462 kb on - strandat 3334.462 kb on - strandat 3334.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,330,701 + +0.3
3,330,705 - -1.0
3,330,709 - -0.9
3,330,709 - +0.0
3,330,709 - -2.6
3,330,709 - -0.2
3,330,739 - -0.6
3,330,739 - -0.6
3,333,479 - +0.1
3,334,366 - +0.6
3,334,462 - -0.2
3,334,462 - +0.8
3,334,468 - -0.7

Or see this region's nucleotide sequence