Strain Fitness in Sinorhizobium meliloti 1021 around SMc01669

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01667 and SMc01668 overlap by 4 nucleotidesSMc01668 and SMc01669 are separated by 84 nucleotidesSMc01669 and SMc01670 are separated by 52 nucleotidesSMc01670 and SMc01671 are separated by 49 nucleotides SMc01667: SMc01667 - hypothetical protein, at 2,471,163 to 2,471,525 SMc01667 SMc01668: SMc01668 - transcriptional regulator, at 2,471,522 to 2,472,118 SMc01668 SMc01669: SMc01669 - enoyl-CoA hydratase, at 2,472,203 to 2,472,994 SMc01669 SMc01670: SMc01670 - hypothetical protein, at 2,473,047 to 2,473,526 SMc01670 SMc01671: SMc01671 - hypothetical protein, at 2,473,576 to 2,474,889 SMc01671 Position (kb) 2472 2473Strain fitness (log2 ratio) -2 -1 0 1 2at 2471.260 kb on + strand, within SMc01667at 2471.261 kb on - strand, within SMc01667at 2471.297 kb on - strand, within SMc01667at 2471.462 kb on - strand, within SMc01667at 2471.462 kb on - strand, within SMc01667at 2471.462 kb on - strand, within SMc01667at 2471.518 kb on - strandat 2471.599 kb on + strand, within SMc01668at 2471.600 kb on - strand, within SMc01668at 2471.600 kb on - strand, within SMc01668at 2471.602 kb on - strand, within SMc01668at 2471.949 kb on + strand, within SMc01668at 2471.986 kb on - strand, within SMc01668at 2471.989 kb on - strand, within SMc01668at 2471.989 kb on - strand, within SMc01668at 2472.061 kb on - strandat 2472.128 kb on - strandat 2472.137 kb on - strandat 2472.167 kb on - strandat 2472.183 kb on + strandat 2472.183 kb on + strandat 2472.183 kb on + strandat 2472.183 kb on + strandat 2472.184 kb on - strandat 2472.184 kb on - strandat 2472.184 kb on - strandat 2472.184 kb on - strandat 2472.287 kb on + strand, within SMc01669at 2472.287 kb on + strand, within SMc01669at 2472.309 kb on + strand, within SMc01669at 2472.537 kb on - strand, within SMc01669at 2472.537 kb on - strand, within SMc01669at 2472.980 kb on + strandat 2472.981 kb on - strandat 2473.048 kb on + strandat 2473.215 kb on + strand, within SMc01670at 2473.215 kb on + strand, within SMc01670at 2473.216 kb on - strand, within SMc01670at 2473.216 kb on - strand, within SMc01670at 2473.246 kb on + strand, within SMc01670at 2473.246 kb on + strand, within SMc01670at 2473.271 kb on + strand, within SMc01670at 2473.273 kb on + strand, within SMc01670at 2473.274 kb on - strand, within SMc01670at 2473.316 kb on + strand, within SMc01670at 2473.317 kb on - strand, within SMc01670at 2473.317 kb on - strand, within SMc01670at 2473.437 kb on + strand, within SMc01670at 2473.437 kb on + strand, within SMc01670at 2473.438 kb on - strand, within SMc01670at 2473.556 kb on + strandat 2473.908 kb on + strand, within SMc01671

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,471,260 + SMc01667 0.27 -0.2
2,471,261 - SMc01667 0.27 -1.0
2,471,297 - SMc01667 0.37 -0.3
2,471,462 - SMc01667 0.82 -0.2
2,471,462 - SMc01667 0.82 -0.2
2,471,462 - SMc01667 0.82 +0.2
2,471,518 - +2.1
2,471,599 + SMc01668 0.13 -0.2
2,471,600 - SMc01668 0.13 -0.3
2,471,600 - SMc01668 0.13 +0.2
2,471,602 - SMc01668 0.13 +0.1
2,471,949 + SMc01668 0.72 +0.9
2,471,986 - SMc01668 0.78 +0.6
2,471,989 - SMc01668 0.78 -1.1
2,471,989 - SMc01668 0.78 -0.3
2,472,061 - -0.0
2,472,128 - -0.4
2,472,137 - -0.5
2,472,167 - -0.4
2,472,183 + +0.4
2,472,183 + +0.7
2,472,183 + -0.3
2,472,183 + +0.1
2,472,184 - -2.2
2,472,184 - -0.9
2,472,184 - -1.1
2,472,184 - +0.2
2,472,287 + SMc01669 0.11 -0.4
2,472,287 + SMc01669 0.11 +0.6
2,472,309 + SMc01669 0.13 -0.4
2,472,537 - SMc01669 0.42 -0.2
2,472,537 - SMc01669 0.42 -1.4
2,472,980 + -0.3
2,472,981 - -0.2
2,473,048 + -0.0
2,473,215 + SMc01670 0.35 +0.2
2,473,215 + SMc01670 0.35 -0.9
2,473,216 - SMc01670 0.35 -0.5
2,473,216 - SMc01670 0.35 +0.1
2,473,246 + SMc01670 0.41 -0.7
2,473,246 + SMc01670 0.41 +0.2
2,473,271 + SMc01670 0.47 -0.5
2,473,273 + SMc01670 0.47 +0.2
2,473,274 - SMc01670 0.47 +0.2
2,473,316 + SMc01670 0.56 -0.1
2,473,317 - SMc01670 0.56 +0.2
2,473,317 - SMc01670 0.56 -0.5
2,473,437 + SMc01670 0.81 +0.1
2,473,437 + SMc01670 0.81 -0.1
2,473,438 - SMc01670 0.81 +0.1
2,473,556 + +0.3
2,473,908 + SMc01671 0.25 -0.5

Or see this region's nucleotide sequence