Strain Fitness in Sinorhizobium meliloti 1021 around SMc01556

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01555 and SMc01596 are separated by 149 nucleotidesSMc01596 and SMc01556 are separated by 145 nucleotidesSMc01556 and SMc01557 are separated by 87 nucleotidesSMc01557 and SMc01558 are separated by 256 nucleotides SMc01555: SMc01555 - hypothetical protein, at 2,496,744 to 2,497,055 SMc01555 SMc01596: SMc01596 - tRNA-Met, at 2,497,205 to 2,497,280 SMc01596 SMc01556: SMc01556 - hypothetical protein, at 2,497,426 to 2,498,214 SMc01556 SMc01557: SMc01557 - signal peptide protein, at 2,498,302 to 2,498,658 SMc01557 SMc01558: SMc01558 - hypothetical protein, at 2,498,915 to 2,499,319 SMc01558 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -1 0 1 2at 2496.500 kb on + strandat 2496.501 kb on - strandat 2496.521 kb on + strandat 2496.569 kb on + strandat 2496.570 kb on - strandat 2496.584 kb on + strandat 2496.585 kb on - strandat 2496.654 kb on + strandat 2496.717 kb on + strandat 2496.718 kb on - strandat 2496.718 kb on - strandat 2496.722 kb on + strandat 2496.723 kb on - strandat 2496.723 kb on - strandat 2496.723 kb on - strandat 2496.733 kb on + strandat 2496.733 kb on + strandat 2496.734 kb on - strandat 2496.745 kb on + strandat 2496.745 kb on + strandat 2496.745 kb on + strandat 2497.111 kb on - strandat 2497.192 kb on + strandat 2497.193 kb on - strandat 2497.370 kb on + strandat 2497.374 kb on + strandat 2497.385 kb on + strandat 2497.783 kb on + strand, within SMc01556at 2497.784 kb on - strand, within SMc01556at 2497.790 kb on - strand, within SMc01556at 2498.174 kb on - strandat 2498.174 kb on - strandat 2498.303 kb on + strandat 2498.415 kb on - strand, within SMc01557at 2498.415 kb on - strand, within SMc01557at 2498.540 kb on + strand, within SMc01557at 2498.710 kb on + strandat 2498.711 kb on - strandat 2498.755 kb on + strandat 2498.906 kb on - strandat 2498.948 kb on - strandat 2498.956 kb on - strand, within SMc01558at 2499.019 kb on - strand, within SMc01558at 2499.063 kb on + strand, within SMc01558at 2499.064 kb on - strand, within SMc01558at 2499.160 kb on - strand, within SMc01558

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,496,500 + +0.2
2,496,501 - -0.3
2,496,521 + +1.0
2,496,569 + +0.5
2,496,570 - -0.5
2,496,584 + -0.3
2,496,585 - +2.1
2,496,654 + +0.3
2,496,717 + -1.0
2,496,718 - -0.2
2,496,718 - -0.5
2,496,722 + +0.3
2,496,723 - +1.4
2,496,723 - -0.3
2,496,723 - +0.3
2,496,733 + -0.5
2,496,733 + -0.0
2,496,734 - +0.4
2,496,745 + -0.4
2,496,745 + -0.7
2,496,745 + +0.1
2,497,111 - -0.3
2,497,192 + -1.1
2,497,193 - -0.1
2,497,370 + -0.1
2,497,374 + +0.1
2,497,385 + -0.4
2,497,783 + SMc01556 0.45 +0.2
2,497,784 - SMc01556 0.45 +0.8
2,497,790 - SMc01556 0.46 +0.6
2,498,174 - -0.4
2,498,174 - -0.0
2,498,303 + -0.2
2,498,415 - SMc01557 0.32 +0.1
2,498,415 - SMc01557 0.32 -0.3
2,498,540 + SMc01557 0.67 +0.3
2,498,710 + +0.4
2,498,711 - +0.8
2,498,755 + -0.2
2,498,906 - -0.1
2,498,948 - -0.3
2,498,956 - SMc01558 0.10 -1.3
2,499,019 - SMc01558 0.26 -0.5
2,499,063 + SMc01558 0.37 +0.5
2,499,064 - SMc01558 0.37 +0.2
2,499,160 - SMc01558 0.60 +0.1

Or see this region's nucleotide sequence