Strain Fitness in Sinorhizobium meliloti 1021 around SMc01550

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01749 and SMc01550 are separated by 299 nucleotidesSMc01550 and SMc01551 are separated by 374 nucleotides SMc01749: SMc01749 - replicative DNA helicase, at 2,489,367 to 2,489,885 SMc01749 SMc01550: SMc01550 - hypothetical protein, at 2,490,185 to 2,490,652 SMc01550 SMc01551: SMc01551 - hypothetical protein, at 2,491,027 to 2,492,595 SMc01551 Position (kb) 2490 2491Strain fitness (log2 ratio) -2 -1 0 1at 2489.202 kb on + strandat 2489.264 kb on + strandat 2489.265 kb on - strandat 2489.265 kb on - strandat 2489.368 kb on + strandat 2489.369 kb on - strandat 2489.404 kb on - strandat 2489.404 kb on - strandat 2489.404 kb on - strandat 2489.410 kb on + strandat 2489.411 kb on - strandat 2489.526 kb on + strand, within SMc01749at 2489.608 kb on - strand, within SMc01749at 2489.617 kb on + strand, within SMc01749at 2489.655 kb on + strand, within SMc01749at 2489.671 kb on + strand, within SMc01749at 2489.671 kb on + strand, within SMc01749at 2489.672 kb on - strand, within SMc01749at 2489.685 kb on - strand, within SMc01749at 2489.711 kb on + strand, within SMc01749at 2489.775 kb on - strand, within SMc01749at 2490.028 kb on + strandat 2490.028 kb on + strandat 2490.029 kb on - strandat 2490.033 kb on + strandat 2490.034 kb on - strandat 2490.034 kb on - strandat 2490.034 kb on - strandat 2490.034 kb on - strandat 2490.036 kb on + strandat 2490.036 kb on + strandat 2490.037 kb on - strandat 2490.037 kb on - strandat 2490.037 kb on - strandat 2490.037 kb on - strandat 2490.193 kb on + strandat 2490.194 kb on - strandat 2490.194 kb on - strandat 2490.212 kb on - strandat 2490.283 kb on + strand, within SMc01550at 2490.283 kb on + strand, within SMc01550at 2490.283 kb on + strand, within SMc01550at 2490.283 kb on + strand, within SMc01550at 2490.521 kb on + strand, within SMc01550at 2490.522 kb on - strand, within SMc01550at 2490.522 kb on - strand, within SMc01550at 2490.555 kb on + strandat 2490.749 kb on - strandat 2490.751 kb on + strandat 2490.756 kb on + strandat 2490.757 kb on - strandat 2490.760 kb on + strandat 2490.760 kb on + strandat 2490.850 kb on + strandat 2490.852 kb on + strandat 2490.856 kb on + strandat 2490.857 kb on - strandat 2490.857 kb on - strandat 2490.885 kb on - strandat 2490.986 kb on + strandat 2491.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,489,202 + -0.3
2,489,264 + -0.5
2,489,265 - +0.1
2,489,265 - +1.0
2,489,368 + -0.4
2,489,369 - -0.2
2,489,404 - -0.1
2,489,404 - +0.2
2,489,404 - -0.0
2,489,410 + +0.3
2,489,411 - +1.0
2,489,526 + SMc01749 0.31 -0.4
2,489,608 - SMc01749 0.46 -0.5
2,489,617 + SMc01749 0.48 +0.2
2,489,655 + SMc01749 0.55 -0.1
2,489,671 + SMc01749 0.59 -0.4
2,489,671 + SMc01749 0.59 -0.8
2,489,672 - SMc01749 0.59 -0.1
2,489,685 - SMc01749 0.61 +0.2
2,489,711 + SMc01749 0.66 -0.2
2,489,775 - SMc01749 0.79 +0.1
2,490,028 + -0.1
2,490,028 + -0.4
2,490,029 - -0.3
2,490,033 + -0.4
2,490,034 - +0.3
2,490,034 - +0.1
2,490,034 - -0.3
2,490,034 - -0.0
2,490,036 + +0.2
2,490,036 + +0.5
2,490,037 - +1.2
2,490,037 - +0.6
2,490,037 - -2.1
2,490,037 - -0.4
2,490,193 + +0.4
2,490,194 - +0.9
2,490,194 - -0.1
2,490,212 - -0.1
2,490,283 + SMc01550 0.21 -0.3
2,490,283 + SMc01550 0.21 +0.3
2,490,283 + SMc01550 0.21 -0.5
2,490,283 + SMc01550 0.21 +0.4
2,490,521 + SMc01550 0.72 +0.0
2,490,522 - SMc01550 0.72 +0.1
2,490,522 - SMc01550 0.72 +0.1
2,490,555 + +0.1
2,490,749 - +0.3
2,490,751 + +0.3
2,490,756 + +0.3
2,490,757 - -0.1
2,490,760 + +0.6
2,490,760 + -0.5
2,490,850 + -0.6
2,490,852 + +1.1
2,490,856 + -1.5
2,490,857 - +0.7
2,490,857 - -0.8
2,490,885 - +0.6
2,490,986 + +0.6
2,491,150 - +1.2

Or see this region's nucleotide sequence