Strain Fitness in Sinorhizobium meliloti 1021 around SMc01472

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01470 and SMc01471 are separated by 147 nucleotidesSMc01471 and SMc01472 are separated by 161 nucleotidesSMc01472 and SMc04453 are separated by 1 nucleotides SMc01470: SMc01470 - signal peptide protein, at 2,318,190 to 2,318,348 SMc01470 SMc01471: SMc01471 - cytochrome C oxidase assembly factor transmembrane protein, at 2,318,496 to 2,319,095 SMc01471 SMc01472: SMc01472 - 50S ribosomal protein L11 methyltransferase, at 2,319,257 to 2,320,132 SMc01472 SMc04453: SMc04453 - hypothetical protein, at 2,320,134 to 2,320,295 SMc04453 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -1 0 1at 2318.422 kb on + strandat 2318.422 kb on + strandat 2318.422 kb on + strandat 2318.423 kb on - strandat 2318.791 kb on - strand, within SMc01471at 2318.819 kb on + strand, within SMc01471at 2318.842 kb on - strand, within SMc01471at 2318.928 kb on + strand, within SMc01471at 2318.928 kb on + strand, within SMc01471at 2318.928 kb on + strand, within SMc01471at 2319.112 kb on - strandat 2319.151 kb on - strandat 2319.151 kb on - strandat 2319.404 kb on + strand, within SMc01472at 2319.405 kb on - strand, within SMc01472at 2320.060 kb on + strandat 2320.130 kb on + strandat 2320.200 kb on + strand, within SMc04453at 2320.297 kb on + strandat 2320.297 kb on + strandat 2320.298 kb on - strandat 2320.299 kb on + strandat 2320.300 kb on - strandat 2320.300 kb on - strandat 2320.307 kb on + strandat 2320.308 kb on - strandat 2320.463 kb on - strandat 2320.463 kb on - strandat 2320.483 kb on + strandat 2320.484 kb on - strandat 2320.488 kb on - strandat 2320.488 kb on - strandat 2320.488 kb on - strandat 2320.543 kb on + strandat 2320.543 kb on + strandat 2320.565 kb on + strandat 2320.565 kb on - strandat 2320.565 kb on - strandat 2320.601 kb on - strandat 2320.765 kb on + strandat 2320.765 kb on + strandat 2320.766 kb on - strandat 2320.856 kb on + strandat 2320.856 kb on + strandat 2320.857 kb on - strandat 2320.857 kb on - strandat 2320.857 kb on - strandat 2320.875 kb on + strandat 2320.966 kb on + strandat 2321.016 kb on + strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.017 kb on - strandat 2321.026 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
2,318,422 + +0.2
2,318,422 + -0.3
2,318,422 + -0.2
2,318,423 - +0.1
2,318,791 - SMc01471 0.49 +0.0
2,318,819 + SMc01471 0.54 -0.1
2,318,842 - SMc01471 0.58 -0.4
2,318,928 + SMc01471 0.72 -1.0
2,318,928 + SMc01471 0.72 +0.6
2,318,928 + SMc01471 0.72 +0.2
2,319,112 - +0.3
2,319,151 - -0.2
2,319,151 - -0.1
2,319,404 + SMc01472 0.17 -0.4
2,319,405 - SMc01472 0.17 +1.5
2,320,060 + -0.2
2,320,130 + +0.5
2,320,200 + SMc04453 0.41 +0.1
2,320,297 + -0.2
2,320,297 + -0.1
2,320,298 - +1.4
2,320,299 + -0.0
2,320,300 - -0.3
2,320,300 - -0.6
2,320,307 + -0.1
2,320,308 - +0.9
2,320,463 - -0.2
2,320,463 - -0.8
2,320,483 + -0.6
2,320,484 - +0.2
2,320,488 - +0.9
2,320,488 - -0.1
2,320,488 - -0.3
2,320,543 + +0.4
2,320,543 + -0.0
2,320,565 + +1.0
2,320,565 - +0.2
2,320,565 - -0.4
2,320,601 - -0.2
2,320,765 + +0.2
2,320,765 + +0.6
2,320,766 - +0.3
2,320,856 + -0.1
2,320,856 + +0.6
2,320,857 - +0.4
2,320,857 - +0.4
2,320,857 - -0.9
2,320,875 + +0.3
2,320,966 + +0.1
2,321,016 + -0.1
2,321,017 - +0.9
2,321,017 - -0.7
2,321,017 - +0.1
2,321,017 - -0.0
2,321,017 - +0.1
2,321,026 - +0.3

Or see this region's nucleotide sequence