Strain Fitness in Sinorhizobium meliloti 1021 around SMc01345

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01347 and SMc01346 are separated by 94 nucleotidesSMc01346 and SMc01345 are separated by 9 nucleotidesSMc01345 and SMc01344 are separated by 6 nucleotidesSMc01344 and SMc01343 are separated by 23 nucleotides SMc01347: SMc01347 - hypothetical protein, at 1,433,876 to 1,434,328 SMc01347 SMc01346: SMc01346 - leucyl/phenylalanyl-tRNA--protein transferase, at 1,434,423 to 1,435,037 SMc01346 SMc01345: SMc01345 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,435,047 to 1,436,396 SMc01345 SMc01344: SMc01344 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 1,436,403 to 1,436,879 SMc01344 SMc01343: SMc01343 - 3-dehydroquinate dehydratase, at 1,436,903 to 1,437,349 SMc01343 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -1 0 1 2at 1434.059 kb on + strand, within SMc01347at 1434.059 kb on + strand, within SMc01347at 1434.060 kb on - strand, within SMc01347at 1434.060 kb on - strand, within SMc01347at 1434.060 kb on - strand, within SMc01347at 1434.062 kb on - strand, within SMc01347at 1434.203 kb on - strand, within SMc01347at 1434.257 kb on + strand, within SMc01347at 1434.257 kb on + strand, within SMc01347at 1434.326 kb on + strandat 1434.395 kb on - strandat 1434.395 kb on - strandat 1434.395 kb on - strandat 1434.417 kb on + strandat 1434.417 kb on + strandat 1434.417 kb on + strandat 1434.417 kb on + strandat 1434.418 kb on - strandat 1434.418 kb on - strandat 1434.473 kb on - strandat 1434.716 kb on + strand, within SMc01346at 1434.716 kb on + strand, within SMc01346at 1434.717 kb on - strand, within SMc01346at 1435.044 kb on - strandat 1435.049 kb on - strandat 1435.049 kb on - strandat 1435.049 kb on - strandat 1435.049 kb on - strandat 1436.931 kb on - strandat 1437.350 kb on - strandat 1437.383 kb on - strandat 1437.383 kb on - strandat 1437.383 kb on - strandat 1437.383 kb on - strandat 1437.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,434,059 + SMc01347 0.40 +1.3
1,434,059 + SMc01347 0.40 -0.9
1,434,060 - SMc01347 0.41 -0.4
1,434,060 - SMc01347 0.41 -0.2
1,434,060 - SMc01347 0.41 +2.1
1,434,062 - SMc01347 0.41 -0.5
1,434,203 - SMc01347 0.72 -1.0
1,434,257 + SMc01347 0.84 -0.2
1,434,257 + SMc01347 0.84 -0.8
1,434,326 + +0.2
1,434,395 - -0.4
1,434,395 - -0.8
1,434,395 - +0.2
1,434,417 + -0.1
1,434,417 + -1.3
1,434,417 + -0.3
1,434,417 + +0.2
1,434,418 - -0.4
1,434,418 - +0.2
1,434,473 - -0.4
1,434,716 + SMc01346 0.48 +0.3
1,434,716 + SMc01346 0.48 +0.3
1,434,717 - SMc01346 0.48 +0.1
1,435,044 - -0.1
1,435,049 - -0.0
1,435,049 - +0.1
1,435,049 - -0.2
1,435,049 - +0.2
1,436,931 - -0.1
1,437,350 - -0.5
1,437,383 - +0.1
1,437,383 - +0.3
1,437,383 - +0.9
1,437,383 - -0.0
1,437,385 - -0.3

Or see this region's nucleotide sequence