Strain Fitness in Sinorhizobium meliloti 1021 around SMc00480

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00481 and SMc00480 are separated by 306 nucleotidesSMc00480 and SMc00479 are separated by 109 nucleotides SMc00481: SMc00481 - hypothetical protein, at 1,934,767 to 1,936,782 SMc00481 SMc00480: SMc00480 - isocitrate dehydrogenase, at 1,937,089 to 1,938,303 SMc00480 SMc00479: SMc00479 - transcriptional regulator, at 1,938,413 to 1,939,429 SMc00479 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1936.364 kb on + strand, within SMc00481at 1936.379 kb on + strand, within SMc00481at 1936.379 kb on + strand, within SMc00481at 1936.436 kb on + strand, within SMc00481at 1936.611 kb on + strandat 1936.612 kb on - strandat 1936.626 kb on - strandat 1937.019 kb on + strandat 1937.019 kb on + strandat 1937.019 kb on + strandat 1937.021 kb on + strandat 1937.021 kb on + strandat 1938.512 kb on + strandat 1938.669 kb on + strand, within SMc00479at 1938.669 kb on + strand, within SMc00479at 1938.669 kb on + strand, within SMc00479at 1938.669 kb on + strand, within SMc00479at 1938.670 kb on - strand, within SMc00479at 1938.733 kb on + strand, within SMc00479at 1938.771 kb on - strand, within SMc00479at 1938.771 kb on - strand, within SMc00479at 1938.771 kb on - strand, within SMc00479at 1938.784 kb on + strand, within SMc00479at 1938.786 kb on + strand, within SMc00479at 1938.803 kb on + strand, within SMc00479at 1938.803 kb on + strand, within SMc00479at 1938.804 kb on - strand, within SMc00479at 1938.804 kb on - strand, within SMc00479at 1938.954 kb on + strand, within SMc00479at 1938.954 kb on + strand, within SMc00479at 1938.955 kb on - strand, within SMc00479at 1938.976 kb on - strand, within SMc00479at 1939.032 kb on - strand, within SMc00479at 1939.161 kb on - strand, within SMc00479at 1939.177 kb on + strand, within SMc00479at 1939.179 kb on + strand, within SMc00479at 1939.179 kb on + strand, within SMc00479at 1939.268 kb on + strand, within SMc00479at 1939.269 kb on - strand, within SMc00479

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,936,364 + SMc00481 0.79 +0.3
1,936,379 + SMc00481 0.80 -0.8
1,936,379 + SMc00481 0.80 -0.1
1,936,436 + SMc00481 0.83 +0.5
1,936,611 + -0.0
1,936,612 - -1.4
1,936,626 - -0.9
1,937,019 + -0.4
1,937,019 + -0.2
1,937,019 + -0.3
1,937,021 + -0.3
1,937,021 + +0.9
1,938,512 + +0.1
1,938,669 + SMc00479 0.25 +0.1
1,938,669 + SMc00479 0.25 +0.0
1,938,669 + SMc00479 0.25 +0.6
1,938,669 + SMc00479 0.25 -0.5
1,938,670 - SMc00479 0.25 -0.0
1,938,733 + SMc00479 0.31 +0.3
1,938,771 - SMc00479 0.35 +3.1
1,938,771 - SMc00479 0.35 +1.2
1,938,771 - SMc00479 0.35 -1.3
1,938,784 + SMc00479 0.36 +0.8
1,938,786 + SMc00479 0.37 +0.0
1,938,803 + SMc00479 0.38 -0.2
1,938,803 + SMc00479 0.38 -2.4
1,938,804 - SMc00479 0.38 +0.4
1,938,804 - SMc00479 0.38 -0.9
1,938,954 + SMc00479 0.53 +0.1
1,938,954 + SMc00479 0.53 +0.2
1,938,955 - SMc00479 0.53 -0.5
1,938,976 - SMc00479 0.55 +0.4
1,939,032 - SMc00479 0.61 +1.2
1,939,161 - SMc00479 0.74 -0.1
1,939,177 + SMc00479 0.75 +0.0
1,939,179 + SMc00479 0.75 -0.1
1,939,179 + SMc00479 0.75 +1.3
1,939,268 + SMc00479 0.84 +0.2
1,939,269 - SMc00479 0.84 +0.6

Or see this region's nucleotide sequence