Strain Fitness in Sinorhizobium meliloti 1021 around SMc00375

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00374 and SMc00375 are separated by 215 nucleotidesSMc00375 and SMc00376 are separated by 48 nucleotidesSMc00376 and SMc00377 are separated by 128 nucleotides SMc00374: SMc00374 - oxidoreductase transmembrane protein, at 328,151 to 329,101 SMc00374 SMc00375: SMc00375 - oxidoreductase, at 329,317 to 330,303 SMc00375 SMc00376: SMc00376 - hypothetical protein, at 330,352 to 330,762 SMc00376 SMc00377: SMc00377 - hypothetical protein, at 330,891 to 331,682 SMc00377 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.467 kb on + strand, within SMc00374at 328.468 kb on - strand, within SMc00374at 328.521 kb on + strand, within SMc00374at 328.521 kb on + strand, within SMc00374at 328.522 kb on - strand, within SMc00374at 328.522 kb on - strand, within SMc00374at 328.546 kb on - strand, within SMc00374at 328.672 kb on + strand, within SMc00374at 328.672 kb on + strand, within SMc00374at 328.673 kb on - strand, within SMc00374at 328.698 kb on + strand, within SMc00374at 328.698 kb on + strand, within SMc00374at 328.698 kb on + strand, within SMc00374at 328.699 kb on - strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.703 kb on + strand, within SMc00374at 328.704 kb on - strand, within SMc00374at 328.704 kb on - strand, within SMc00374at 328.731 kb on + strand, within SMc00374at 328.731 kb on + strand, within SMc00374at 328.731 kb on + strand, within SMc00374at 328.732 kb on - strand, within SMc00374at 328.732 kb on - strand, within SMc00374at 328.732 kb on - strand, within SMc00374at 328.741 kb on + strand, within SMc00374at 328.742 kb on - strand, within SMc00374at 328.743 kb on + strand, within SMc00374at 328.743 kb on + strand, within SMc00374at 328.744 kb on - strand, within SMc00374at 328.891 kb on + strand, within SMc00374at 328.891 kb on + strand, within SMc00374at 328.892 kb on - strand, within SMc00374at 328.944 kb on + strand, within SMc00374at 328.945 kb on - strand, within SMc00374at 328.945 kb on - strand, within SMc00374at 329.226 kb on + strandat 329.230 kb on + strandat 329.483 kb on - strand, within SMc00375at 329.522 kb on - strand, within SMc00375at 329.522 kb on - strand, within SMc00375at 329.524 kb on - strand, within SMc00375at 329.588 kb on + strand, within SMc00375at 329.589 kb on - strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.680 kb on + strand, within SMc00375at 329.681 kb on - strand, within SMc00375at 329.681 kb on - strand, within SMc00375at 329.681 kb on - strand, within SMc00375at 329.682 kb on + strand, within SMc00375at 329.682 kb on + strand, within SMc00375at 329.682 kb on + strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.683 kb on - strand, within SMc00375at 329.692 kb on + strand, within SMc00375at 329.693 kb on - strand, within SMc00375at 329.693 kb on - strand, within SMc00375at 329.776 kb on + strand, within SMc00375at 329.852 kb on - strand, within SMc00375at 329.944 kb on + strand, within SMc00375at 329.989 kb on + strand, within SMc00375at 329.989 kb on + strand, within SMc00375at 329.989 kb on + strand, within SMc00375at 329.990 kb on - strand, within SMc00375at 330.046 kb on + strand, within SMc00375at 330.160 kb on + strand, within SMc00375at 330.160 kb on + strand, within SMc00375at 330.265 kb on + strandat 330.266 kb on - strandat 330.345 kb on + strandat 330.822 kb on + strandat 330.822 kb on + strandat 330.823 kb on - strandat 330.886 kb on + strandat 330.887 kb on - strandat 330.887 kb on - strandat 330.985 kb on + strand, within SMc00377at 330.986 kb on - strand, within SMc00377at 330.986 kb on - strand, within SMc00377at 331.226 kb on + strand, within SMc00377at 331.226 kb on + strand, within SMc00377at 331.226 kb on + strand, within SMc00377at 331.227 kb on - strand, within SMc00377at 331.227 kb on - strand, within SMc00377at 331.227 kb on - strand, within SMc00377

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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328,467 + SMc00374 0.33 +0.4
328,468 - SMc00374 0.33 +0.1
328,521 + SMc00374 0.39 +0.3
328,521 + SMc00374 0.39 -0.2
328,522 - SMc00374 0.39 -1.1
328,522 - SMc00374 0.39 -0.1
328,546 - SMc00374 0.42 -0.7
328,672 + SMc00374 0.55 +0.4
328,672 + SMc00374 0.55 +0.1
328,673 - SMc00374 0.55 +0.9
328,698 + SMc00374 0.58 -0.8
328,698 + SMc00374 0.58 -1.0
328,698 + SMc00374 0.58 -0.4
328,699 - SMc00374 0.58 -0.1
328,703 + SMc00374 0.58 +0.3
328,703 + SMc00374 0.58 +0.0
328,703 + SMc00374 0.58 -0.1
328,703 + SMc00374 0.58 +0.2
328,703 + SMc00374 0.58 -0.2
328,704 - SMc00374 0.58 -1.2
328,704 - SMc00374 0.58 +0.0
328,731 + SMc00374 0.61 +0.3
328,731 + SMc00374 0.61 +1.3
328,731 + SMc00374 0.61 -0.4
328,732 - SMc00374 0.61 -0.3
328,732 - SMc00374 0.61 -0.2
328,732 - SMc00374 0.61 -1.0
328,741 + SMc00374 0.62 -0.1
328,742 - SMc00374 0.62 +0.3
328,743 + SMc00374 0.62 +1.0
328,743 + SMc00374 0.62 -0.5
328,744 - SMc00374 0.62 +0.3
328,891 + SMc00374 0.78 +0.3
328,891 + SMc00374 0.78 +0.7
328,892 - SMc00374 0.78 -0.5
328,944 + SMc00374 0.83 -1.3
328,945 - SMc00374 0.83 -0.2
328,945 - SMc00374 0.83 +0.9
329,226 + +0.1
329,230 + -0.0
329,483 - SMc00375 0.17 +0.1
329,522 - SMc00375 0.21 +0.3
329,522 - SMc00375 0.21 +0.8
329,524 - SMc00375 0.21 -0.4
329,588 + SMc00375 0.27 -0.3
329,589 - SMc00375 0.28 -1.1
329,680 + SMc00375 0.37 -0.1
329,680 + SMc00375 0.37 +0.3
329,680 + SMc00375 0.37 -0.6
329,680 + SMc00375 0.37 -0.0
329,681 - SMc00375 0.37 -1.7
329,681 - SMc00375 0.37 -0.1
329,681 - SMc00375 0.37 -0.1
329,682 + SMc00375 0.37 -0.8
329,682 + SMc00375 0.37 +0.3
329,682 + SMc00375 0.37 -0.2
329,683 - SMc00375 0.37 +0.1
329,683 - SMc00375 0.37 +0.1
329,683 - SMc00375 0.37 +0.9
329,683 - SMc00375 0.37 -0.6
329,683 - SMc00375 0.37 -0.1
329,692 + SMc00375 0.38 +0.5
329,693 - SMc00375 0.38 +0.8
329,693 - SMc00375 0.38 +0.6
329,776 + SMc00375 0.47 -0.1
329,852 - SMc00375 0.54 +1.0
329,944 + SMc00375 0.64 -0.1
329,989 + SMc00375 0.68 -0.3
329,989 + SMc00375 0.68 -1.2
329,989 + SMc00375 0.68 +0.4
329,990 - SMc00375 0.68 -0.2
330,046 + SMc00375 0.74 +0.6
330,160 + SMc00375 0.85 -0.1
330,160 + SMc00375 0.85 -2.0
330,265 + +0.0
330,266 - -1.1
330,345 + -1.0
330,822 + -0.3
330,822 + -0.0
330,823 - -0.0
330,886 + -0.7
330,887 - -0.0
330,887 - -0.0
330,985 + SMc00377 0.12 +0.1
330,986 - SMc00377 0.12 +0.4
330,986 - SMc00377 0.12 -0.6
331,226 + SMc00377 0.42 +0.2
331,226 + SMc00377 0.42 -0.5
331,226 + SMc00377 0.42 -0.3
331,227 - SMc00377 0.42 +0.4
331,227 - SMc00377 0.42 +0.2
331,227 - SMc00377 0.42 +1.9

Or see this region's nucleotide sequence