Strain Fitness in Sinorhizobium meliloti 1021 around SMa2355

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa2353 and SMa2355 are separated by 183 nucleotides SMa2353: SMa2353 - oxidoreductase, at 1,324,660 to 1,326,858 SMa2353 SMa2355: SMa2355 - DNA polymerase IV, at 1,327,042 to 1,328,151 SMa2355 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -3 -2 -1 0 1at 1326.048 kb on + strand, within SMa2353at 1326.048 kb on + strand, within SMa2353at 1326.049 kb on - strand, within SMa2353at 1326.073 kb on + strand, within SMa2353at 1326.074 kb on - strand, within SMa2353at 1326.074 kb on - strand, within SMa2353at 1326.212 kb on + strand, within SMa2353at 1326.212 kb on + strand, within SMa2353at 1326.213 kb on - strand, within SMa2353at 1326.214 kb on + strand, within SMa2353at 1326.635 kb on - strand, within SMa2353at 1326.774 kb on + strandat 1326.778 kb on + strandat 1326.778 kb on + strandat 1326.778 kb on + strandat 1326.778 kb on + strandat 1326.778 kb on + strandat 1326.778 kb on + strandat 1326.778 kb on + strandat 1326.779 kb on - strandat 1326.779 kb on - strandat 1326.779 kb on - strandat 1326.794 kb on + strandat 1326.795 kb on - strandat 1326.866 kb on - strandat 1326.866 kb on - strandat 1326.961 kb on - strandat 1326.961 kb on - strandat 1326.983 kb on + strandat 1326.984 kb on - strandat 1326.998 kb on + strandat 1326.999 kb on - strandat 1327.219 kb on + strand, within SMa2355at 1327.220 kb on - strand, within SMa2355at 1327.318 kb on + strand, within SMa2355at 1327.361 kb on - strand, within SMa2355at 1327.361 kb on - strand, within SMa2355at 1327.399 kb on + strand, within SMa2355at 1327.513 kb on + strand, within SMa2355at 1327.514 kb on - strand, within SMa2355at 1327.744 kb on + strand, within SMa2355at 1327.745 kb on - strand, within SMa2355at 1327.779 kb on + strand, within SMa2355at 1327.825 kb on - strand, within SMa2355at 1327.825 kb on - strand, within SMa2355at 1328.249 kb on + strandat 1328.249 kb on + strandat 1328.334 kb on + strandat 1328.342 kb on + strandat 1328.343 kb on - strandat 1328.343 kb on - strandat 1328.345 kb on - strandat 1328.345 kb on - strandat 1328.345 kb on - strandat 1328.345 kb on - strandat 1328.345 kb on - strandat 1328.662 kb on - strandat 1328.673 kb on + strandat 1328.673 kb on + strandat 1328.693 kb on + strandat 1328.694 kb on - strandat 1328.742 kb on + strandat 1328.743 kb on - strandat 1328.763 kb on - strandat 1329.024 kb on + strandat 1329.024 kb on + strandat 1329.024 kb on + strandat 1329.025 kb on - strandat 1329.025 kb on - strandat 1329.025 kb on - strandat 1329.035 kb on - strandat 1329.049 kb on + strandat 1329.142 kb on + strandat 1329.143 kb on - strandat 1329.143 kb on - strandat 1329.143 kb on - strandat 1329.143 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
1,326,048 + SMa2353 0.63 -0.5
1,326,048 + SMa2353 0.63 -0.1
1,326,049 - SMa2353 0.63 +0.3
1,326,073 + SMa2353 0.64 -0.0
1,326,074 - SMa2353 0.64 -0.6
1,326,074 - SMa2353 0.64 -0.2
1,326,212 + SMa2353 0.71 -0.7
1,326,212 + SMa2353 0.71 +0.1
1,326,213 - SMa2353 0.71 -0.5
1,326,214 + SMa2353 0.71 -0.0
1,326,635 - SMa2353 0.90 +0.4
1,326,774 + -0.7
1,326,778 + -3.4
1,326,778 + +0.2
1,326,778 + -0.2
1,326,778 + +0.1
1,326,778 + +0.6
1,326,778 + -0.7
1,326,778 + +0.4
1,326,779 - +0.8
1,326,779 - +0.9
1,326,779 - +0.2
1,326,794 + -0.1
1,326,795 - -1.5
1,326,866 - -0.5
1,326,866 - -0.3
1,326,961 - +1.3
1,326,961 - -0.0
1,326,983 + -0.2
1,326,984 - -0.8
1,326,998 + -1.2
1,326,999 - +0.5
1,327,219 + SMa2355 0.16 -0.1
1,327,220 - SMa2355 0.16 +0.3
1,327,318 + SMa2355 0.25 +0.4
1,327,361 - SMa2355 0.29 +0.2
1,327,361 - SMa2355 0.29 +0.8
1,327,399 + SMa2355 0.32 +0.4
1,327,513 + SMa2355 0.42 +0.8
1,327,514 - SMa2355 0.43 +0.4
1,327,744 + SMa2355 0.63 +0.6
1,327,745 - SMa2355 0.63 +0.9
1,327,779 + SMa2355 0.66 +0.4
1,327,825 - SMa2355 0.71 +0.1
1,327,825 - SMa2355 0.71 +0.3
1,328,249 + -0.1
1,328,249 + +0.5
1,328,334 + -0.3
1,328,342 + -0.4
1,328,343 - -0.0
1,328,343 - +0.3
1,328,345 - +0.1
1,328,345 - -0.6
1,328,345 - +1.0
1,328,345 - +0.1
1,328,345 - -0.4
1,328,662 - +0.7
1,328,673 + -0.7
1,328,673 + +0.1
1,328,693 + -0.0
1,328,694 - +0.0
1,328,742 + -1.2
1,328,743 - +0.6
1,328,763 - -0.1
1,329,024 + -0.2
1,329,024 + +0.9
1,329,024 + +0.1
1,329,025 - -0.2
1,329,025 - +0.3
1,329,025 - -0.2
1,329,035 - +0.1
1,329,049 + +0.2
1,329,142 + -0.2
1,329,143 - -0.3
1,329,143 - -0.2
1,329,143 - -1.3
1,329,143 - +1.0

Or see this region's nucleotide sequence