Strain Fitness in Sinorhizobium meliloti 1021 around SMa1363

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1362 and SMa1363 overlap by 4 nucleotidesSMa1363 and SMa1364 are separated by 63 nucleotides SMa1362: SMa1362 - inner-membrane permease, at 746,199 to 747,599 SMa1362 SMa1363: SMa1363 - ABC transporter permease, at 747,596 to 748,684 SMa1363 SMa1364: SMa1364 - ABC transporter substrate-binding protein, at 748,748 to 749,968 SMa1364 Position (kb) 747 748 749Strain fitness (log2 ratio) -1 0 1at 746.607 kb on + strand, within SMa1362at 746.607 kb on + strand, within SMa1362at 746.654 kb on - strand, within SMa1362at 746.813 kb on + strand, within SMa1362at 746.814 kb on - strand, within SMa1362at 746.871 kb on + strand, within SMa1362at 746.884 kb on + strand, within SMa1362at 747.024 kb on - strand, within SMa1362at 747.044 kb on + strand, within SMa1362at 747.045 kb on - strand, within SMa1362at 747.045 kb on - strand, within SMa1362at 747.061 kb on + strand, within SMa1362at 747.062 kb on - strand, within SMa1362at 747.182 kb on - strand, within SMa1362at 747.257 kb on + strand, within SMa1362at 747.257 kb on + strand, within SMa1362at 747.258 kb on - strand, within SMa1362at 747.278 kb on - strand, within SMa1362at 747.397 kb on + strand, within SMa1362at 747.442 kb on - strand, within SMa1362at 747.444 kb on - strand, within SMa1362at 747.444 kb on - strand, within SMa1362at 747.499 kb on + strandat 747.499 kb on + strandat 747.500 kb on - strandat 747.501 kb on + strandat 747.652 kb on + strandat 747.653 kb on - strandat 747.653 kb on - strandat 747.730 kb on - strand, within SMa1363at 747.735 kb on + strand, within SMa1363at 747.736 kb on - strand, within SMa1363at 747.738 kb on + strand, within SMa1363at 747.779 kb on + strand, within SMa1363at 747.806 kb on + strand, within SMa1363at 747.807 kb on - strand, within SMa1363at 747.807 kb on - strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.869 kb on + strand, within SMa1363at 747.870 kb on - strand, within SMa1363at 747.921 kb on + strand, within SMa1363at 747.922 kb on - strand, within SMa1363at 747.924 kb on - strand, within SMa1363at 747.998 kb on + strand, within SMa1363at 748.052 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.072 kb on + strand, within SMa1363at 748.183 kb on - strand, within SMa1363at 748.183 kb on - strand, within SMa1363at 748.522 kb on - strand, within SMa1363at 748.733 kb on + strandat 748.891 kb on + strand, within SMa1364at 748.891 kb on + strand, within SMa1364at 748.892 kb on - strand, within SMa1364at 748.981 kb on + strand, within SMa1364at 748.982 kb on - strand, within SMa1364at 749.038 kb on + strand, within SMa1364at 749.038 kb on + strand, within SMa1364at 749.039 kb on - strand, within SMa1364at 749.039 kb on - strand, within SMa1364at 749.042 kb on + strand, within SMa1364at 749.043 kb on - strand, within SMa1364at 749.072 kb on - strand, within SMa1364at 749.228 kb on + strand, within SMa1364at 749.322 kb on + strand, within SMa1364at 749.322 kb on + strand, within SMa1364at 749.350 kb on + strand, within SMa1364at 749.357 kb on + strand, within SMa1364at 749.424 kb on + strand, within SMa1364at 749.424 kb on + strand, within SMa1364at 749.575 kb on + strand, within SMa1364at 749.575 kb on + strand, within SMa1364at 749.598 kb on + strand, within SMa1364

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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746,607 + SMa1362 0.29 +0.3
746,607 + SMa1362 0.29 +0.0
746,654 - SMa1362 0.32 -0.5
746,813 + SMa1362 0.44 -0.7
746,814 - SMa1362 0.44 -0.0
746,871 + SMa1362 0.48 +0.0
746,884 + SMa1362 0.49 -0.1
747,024 - SMa1362 0.59 +0.6
747,044 + SMa1362 0.60 +0.2
747,045 - SMa1362 0.60 +0.3
747,045 - SMa1362 0.60 -0.2
747,061 + SMa1362 0.62 -0.2
747,062 - SMa1362 0.62 -0.0
747,182 - SMa1362 0.70 +0.6
747,257 + SMa1362 0.76 -0.1
747,257 + SMa1362 0.76 +0.0
747,258 - SMa1362 0.76 +0.1
747,278 - SMa1362 0.77 +1.7
747,397 + SMa1362 0.86 +1.3
747,442 - SMa1362 0.89 -0.7
747,444 - SMa1362 0.89 +0.4
747,444 - SMa1362 0.89 -0.2
747,499 + -0.1
747,499 + -0.1
747,500 - -0.3
747,501 + -0.0
747,652 + -0.5
747,653 - +0.3
747,653 - -0.5
747,730 - SMa1363 0.12 -0.4
747,735 + SMa1363 0.13 -0.1
747,736 - SMa1363 0.13 -0.6
747,738 + SMa1363 0.13 -1.6
747,779 + SMa1363 0.17 -0.2
747,806 + SMa1363 0.19 +0.1
747,807 - SMa1363 0.19 -0.2
747,807 - SMa1363 0.19 +0.1
747,869 + SMa1363 0.25 -0.5
747,869 + SMa1363 0.25 +0.2
747,869 + SMa1363 0.25 -1.3
747,869 + SMa1363 0.25 -0.0
747,869 + SMa1363 0.25 -0.7
747,870 - SMa1363 0.25 -0.1
747,921 + SMa1363 0.30 +0.5
747,922 - SMa1363 0.30 -0.1
747,924 - SMa1363 0.30 -0.7
747,998 + SMa1363 0.37 -1.0
748,052 + SMa1363 0.42 -1.1
748,072 + SMa1363 0.44 +0.2
748,072 + SMa1363 0.44 -0.5
748,072 + SMa1363 0.44 -0.0
748,072 + SMa1363 0.44 +0.5
748,072 + SMa1363 0.44 -0.4
748,183 - SMa1363 0.54 +0.1
748,183 - SMa1363 0.54 -0.7
748,522 - SMa1363 0.85 -0.5
748,733 + -0.1
748,891 + SMa1364 0.12 -0.1
748,891 + SMa1364 0.12 +0.7
748,892 - SMa1364 0.12 -1.2
748,981 + SMa1364 0.19 -1.1
748,982 - SMa1364 0.19 -0.3
749,038 + SMa1364 0.24 -0.7
749,038 + SMa1364 0.24 +0.0
749,039 - SMa1364 0.24 -0.9
749,039 - SMa1364 0.24 -0.6
749,042 + SMa1364 0.24 +0.2
749,043 - SMa1364 0.24 -0.5
749,072 - SMa1364 0.27 -0.5
749,228 + SMa1364 0.39 -0.4
749,322 + SMa1364 0.47 -0.0
749,322 + SMa1364 0.47 -0.1
749,350 + SMa1364 0.49 -1.6
749,357 + SMa1364 0.50 -0.4
749,424 + SMa1364 0.55 +1.6
749,424 + SMa1364 0.55 -0.1
749,575 + SMa1364 0.68 +0.5
749,575 + SMa1364 0.68 -0.2
749,598 + SMa1364 0.70 -0.1

Or see this region's nucleotide sequence