Strain Fitness in Sinorhizobium meliloti 1021 around SMa0708

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0707 and SMa0708 overlap by 4 nucleotidesSMa0708 and SMa0709 are separated by 32 nucleotides SMa0707: SMa0707 - dihydrodipicolinate synthase, at 381,959 to 382,921 SMa0707 SMa0708: SMa0708 - enolase, at 382,918 to 384,087 SMa0708 SMa0709: SMa0709 - ABC transporter substrate-binding protein, at 384,120 to 385,385 SMa0709 Position (kb) 382 383 384 385Strain fitness (log2 ratio) -1 0 1at 381.945 kb on + strandat 381.945 kb on + strandat 381.946 kb on - strandat 381.946 kb on - strandat 381.946 kb on - strandat 381.946 kb on - strandat 382.484 kb on + strand, within SMa0707at 382.552 kb on + strand, within SMa0707at 382.552 kb on + strand, within SMa0707at 382.552 kb on + strand, within SMa0707at 382.552 kb on + strand, within SMa0707at 382.601 kb on + strand, within SMa0707at 382.674 kb on - strand, within SMa0707at 382.722 kb on + strand, within SMa0707at 382.722 kb on + strand, within SMa0707at 382.722 kb on + strand, within SMa0707at 382.748 kb on + strand, within SMa0707at 382.809 kb on + strand, within SMa0707at 382.809 kb on + strand, within SMa0707at 382.810 kb on - strand, within SMa0707at 382.810 kb on - strand, within SMa0707at 382.978 kb on + strandat 382.979 kb on - strandat 382.979 kb on - strandat 383.024 kb on - strandat 383.028 kb on - strandat 383.028 kb on - strandat 383.054 kb on - strand, within SMa0708at 383.233 kb on + strand, within SMa0708at 383.233 kb on + strand, within SMa0708at 383.258 kb on - strand, within SMa0708at 383.259 kb on + strand, within SMa0708at 383.272 kb on + strand, within SMa0708at 383.273 kb on - strand, within SMa0708at 383.386 kb on + strand, within SMa0708at 383.386 kb on + strand, within SMa0708at 383.387 kb on - strand, within SMa0708at 383.387 kb on - strand, within SMa0708at 383.387 kb on - strand, within SMa0708at 383.388 kb on + strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.389 kb on - strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.739 kb on + strand, within SMa0708at 383.740 kb on - strand, within SMa0708at 383.796 kb on + strand, within SMa0708at 383.797 kb on - strand, within SMa0708at 383.830 kb on + strand, within SMa0708at 383.831 kb on - strand, within SMa0708at 383.831 kb on - strand, within SMa0708at 384.013 kb on + strandat 384.303 kb on - strand, within SMa0709at 384.336 kb on + strand, within SMa0709at 384.383 kb on + strand, within SMa0709at 384.425 kb on + strand, within SMa0709at 384.518 kb on + strand, within SMa0709at 384.543 kb on + strand, within SMa0709at 384.544 kb on - strand, within SMa0709at 384.565 kb on - strand, within SMa0709at 384.612 kb on + strand, within SMa0709at 384.720 kb on + strand, within SMa0709at 384.720 kb on + strand, within SMa0709at 384.721 kb on - strand, within SMa0709at 384.721 kb on - strand, within SMa0709at 384.721 kb on - strand, within SMa0709at 384.724 kb on + strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.725 kb on - strand, within SMa0709at 384.741 kb on + strand, within SMa0709at 384.793 kb on + strand, within SMa0709at 384.793 kb on + strand, within SMa0709at 384.793 kb on + strand, within SMa0709at 384.794 kb on - strand, within SMa0709at 384.971 kb on + strand, within SMa0709

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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381,945 + +0.5
381,945 + +0.3
381,946 - +1.2
381,946 - -0.0
381,946 - +0.0
381,946 - +0.1
382,484 + SMa0707 0.55 -0.0
382,552 + SMa0707 0.62 -0.1
382,552 + SMa0707 0.62 -1.0
382,552 + SMa0707 0.62 -0.3
382,552 + SMa0707 0.62 -0.3
382,601 + SMa0707 0.67 +0.3
382,674 - SMa0707 0.74 +0.1
382,722 + SMa0707 0.79 -0.0
382,722 + SMa0707 0.79 +0.5
382,722 + SMa0707 0.79 -0.4
382,748 + SMa0707 0.82 -0.6
382,809 + SMa0707 0.88 +0.7
382,809 + SMa0707 0.88 +0.0
382,810 - SMa0707 0.88 +1.3
382,810 - SMa0707 0.88 +0.2
382,978 + -0.3
382,979 - +0.5
382,979 - -1.1
383,024 - +1.1
383,028 - +0.3
383,028 - +1.1
383,054 - SMa0708 0.12 +0.6
383,233 + SMa0708 0.27 +0.5
383,233 + SMa0708 0.27 +0.6
383,258 - SMa0708 0.29 +0.6
383,259 + SMa0708 0.29 -0.8
383,272 + SMa0708 0.30 -0.1
383,273 - SMa0708 0.30 -0.2
383,386 + SMa0708 0.40 -1.7
383,386 + SMa0708 0.40 +0.5
383,387 - SMa0708 0.40 -0.5
383,387 - SMa0708 0.40 -0.2
383,387 - SMa0708 0.40 -0.1
383,388 + SMa0708 0.40 +1.0
383,389 - SMa0708 0.40 -0.2
383,389 - SMa0708 0.40 -0.1
383,389 - SMa0708 0.40 -0.0
383,389 - SMa0708 0.40 +0.6
383,739 + SMa0708 0.70 -0.6
383,739 + SMa0708 0.70 +0.3
383,739 + SMa0708 0.70 +0.1
383,739 + SMa0708 0.70 +0.1
383,740 - SMa0708 0.70 -0.0
383,796 + SMa0708 0.75 +0.2
383,797 - SMa0708 0.75 +1.0
383,830 + SMa0708 0.78 -0.2
383,831 - SMa0708 0.78 -0.7
383,831 - SMa0708 0.78 -0.0
384,013 + +0.4
384,303 - SMa0709 0.14 +1.0
384,336 + SMa0709 0.17 -0.5
384,383 + SMa0709 0.21 +0.1
384,425 + SMa0709 0.24 +0.2
384,518 + SMa0709 0.31 -0.4
384,543 + SMa0709 0.33 +0.1
384,544 - SMa0709 0.33 -0.0
384,565 - SMa0709 0.35 +0.2
384,612 + SMa0709 0.39 -0.0
384,720 + SMa0709 0.47 -0.2
384,720 + SMa0709 0.47 -0.3
384,721 - SMa0709 0.47 +0.3
384,721 - SMa0709 0.47 -0.4
384,721 - SMa0709 0.47 +0.6
384,724 + SMa0709 0.48 -0.2
384,725 - SMa0709 0.48 +0.1
384,725 - SMa0709 0.48 -0.1
384,725 - SMa0709 0.48 -0.1
384,725 - SMa0709 0.48 +1.0
384,741 + SMa0709 0.49 +0.2
384,793 + SMa0709 0.53 +0.1
384,793 + SMa0709 0.53 +0.2
384,793 + SMa0709 0.53 +0.2
384,794 - SMa0709 0.53 -0.2
384,971 + SMa0709 0.67 +0.5

Or see this region's nucleotide sequence