Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0191 and SMa0193 overlap by 4 nucleotides SMa0193 and SMa0196 are separated by 296 nucleotides SMa0196 and SMa0197 are separated by 14 nucleotides SMa0197 and SMa0198 overlap by 4 nucleotides
SMa0191: SMa0191 - hypothetical protein, at 105,799 to 106,329
SMa0191
SMa0193: SMa0193 - hypothetical protein, at 106,326 to 106,652
SMa0193
SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863
SMa0196
SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825
SMa0197
SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769
SMa0198
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-1
0
1 at 105.976 kb on + strand, within SMa0191 at 105.977 kb on - strand, within SMa0191 at 106.080 kb on + strand, within SMa0191 at 106.109 kb on + strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.250 kb on + strand, within SMa0191 at 106.347 kb on + strand at 106.449 kb on - strand, within SMa0193 at 106.735 kb on + strand at 106.841 kb on + strand at 106.950 kb on + strand at 106.981 kb on - strand at 106.989 kb on + strand at 107.243 kb on + strand, within SMa0196 at 107.424 kb on + strand, within SMa0196 at 107.425 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.629 kb on + strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.781 kb on + strand at 107.782 kb on - strand at 107.844 kb on + strand at 107.969 kb on + strand at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.269 kb on + strand, within SMa0197 at 108.270 kb on - strand, within SMa0197 at 108.361 kb on - strand, within SMa0197 at 108.489 kb on + strand, within SMa0197 at 108.491 kb on + strand, within SMa0197 at 108.492 kb on - strand, within SMa0197 at 108.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 105,976 + SMa0191 0.33 +0.2 105,977 - SMa0191 0.34 -0.1 106,080 + SMa0191 0.53 -0.1 106,109 + SMa0191 0.58 +0.3 106,110 - SMa0191 0.59 -0.6 106,110 - SMa0191 0.59 -0.4 106,167 + SMa0191 0.69 -0.1 106,167 + SMa0191 0.69 -0.0 106,167 + SMa0191 0.69 +0.0 106,167 + SMa0191 0.69 +0.3 106,250 + SMa0191 0.85 -0.8 106,347 + +1.1 106,449 - SMa0193 0.38 +0.1 106,735 + -0.2 106,841 + -0.7 106,950 + +0.1 106,981 - -0.5 106,989 + -0.4 107,243 + SMa0196 0.32 -0.4 107,424 + SMa0196 0.52 -0.4 107,425 - SMa0196 0.52 +0.0 107,452 - SMa0196 0.55 +0.0 107,452 - SMa0196 0.55 -0.1 107,452 - SMa0196 0.55 +0.0 107,629 + SMa0196 0.74 -0.0 107,630 - SMa0196 0.74 -1.0 107,630 - SMa0196 0.74 -0.1 107,781 + -0.4 107,782 - -0.6 107,844 + +0.3 107,969 + -0.1 108,182 + SMa0197 0.32 +0.3 108,182 + SMa0197 0.32 +1.2 108,182 + SMa0197 0.32 +0.5 108,269 + SMa0197 0.41 -0.0 108,270 - SMa0197 0.41 +0.5 108,361 - SMa0197 0.51 +0.4 108,489 + SMa0197 0.64 +0.3 108,491 + SMa0197 0.65 -0.2 108,492 - SMa0197 0.65 +0.1 108,813 + +0.7
Or see this region's nucleotide sequence