Strain Fitness in Sinorhizobium meliloti 1021 around SMa0196

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0191 and SMa0193 overlap by 4 nucleotidesSMa0193 and SMa0196 are separated by 296 nucleotidesSMa0196 and SMa0197 are separated by 14 nucleotidesSMa0197 and SMa0198 overlap by 4 nucleotides SMa0191: SMa0191 - hypothetical protein, at 105,799 to 106,329 SMa0191 SMa0193: SMa0193 - hypothetical protein, at 106,326 to 106,652 SMa0193 SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863 SMa0196 SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825 SMa0197 SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769 SMa0198 Position (kb) 106 107 108Strain fitness (log2 ratio) -1 0 1at 105.976 kb on + strand, within SMa0191at 105.977 kb on - strand, within SMa0191at 106.080 kb on + strand, within SMa0191at 106.109 kb on + strand, within SMa0191at 106.110 kb on - strand, within SMa0191at 106.110 kb on - strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.167 kb on + strand, within SMa0191at 106.250 kb on + strand, within SMa0191at 106.347 kb on + strandat 106.449 kb on - strand, within SMa0193at 106.735 kb on + strandat 106.841 kb on + strandat 106.950 kb on + strandat 106.981 kb on - strandat 106.989 kb on + strandat 107.243 kb on + strand, within SMa0196at 107.424 kb on + strand, within SMa0196at 107.425 kb on - strand, within SMa0196at 107.452 kb on - strand, within SMa0196at 107.452 kb on - strand, within SMa0196at 107.452 kb on - strand, within SMa0196at 107.629 kb on + strand, within SMa0196at 107.630 kb on - strand, within SMa0196at 107.630 kb on - strand, within SMa0196at 107.781 kb on + strandat 107.782 kb on - strandat 107.844 kb on + strandat 107.969 kb on + strandat 108.182 kb on + strand, within SMa0197at 108.182 kb on + strand, within SMa0197at 108.182 kb on + strand, within SMa0197at 108.269 kb on + strand, within SMa0197at 108.270 kb on - strand, within SMa0197at 108.361 kb on - strand, within SMa0197at 108.489 kb on + strand, within SMa0197at 108.491 kb on + strand, within SMa0197at 108.492 kb on - strand, within SMa0197at 108.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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105,976 + SMa0191 0.33 +0.2
105,977 - SMa0191 0.34 -0.1
106,080 + SMa0191 0.53 -0.1
106,109 + SMa0191 0.58 +0.3
106,110 - SMa0191 0.59 -0.6
106,110 - SMa0191 0.59 -0.4
106,167 + SMa0191 0.69 -0.1
106,167 + SMa0191 0.69 -0.0
106,167 + SMa0191 0.69 +0.0
106,167 + SMa0191 0.69 +0.3
106,250 + SMa0191 0.85 -0.8
106,347 + +1.1
106,449 - SMa0193 0.38 +0.1
106,735 + -0.2
106,841 + -0.7
106,950 + +0.1
106,981 - -0.5
106,989 + -0.4
107,243 + SMa0196 0.32 -0.4
107,424 + SMa0196 0.52 -0.4
107,425 - SMa0196 0.52 +0.0
107,452 - SMa0196 0.55 +0.0
107,452 - SMa0196 0.55 -0.1
107,452 - SMa0196 0.55 +0.0
107,629 + SMa0196 0.74 -0.0
107,630 - SMa0196 0.74 -1.0
107,630 - SMa0196 0.74 -0.1
107,781 + -0.4
107,782 - -0.6
107,844 + +0.3
107,969 + -0.1
108,182 + SMa0197 0.32 +0.3
108,182 + SMa0197 0.32 +1.2
108,182 + SMa0197 0.32 +0.5
108,269 + SMa0197 0.41 -0.0
108,270 - SMa0197 0.41 +0.5
108,361 - SMa0197 0.51 +0.4
108,489 + SMa0197 0.64 +0.3
108,491 + SMa0197 0.65 -0.2
108,492 - SMa0197 0.65 +0.1
108,813 + +0.7

Or see this region's nucleotide sequence