Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5400

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
6,203,993	-		Pf6N2E2_5399	0.13	+0.3
6,203,993	-		Pf6N2E2_5399	0.13	+0.8
6,204,186	+		Pf6N2E2_5399	0.38	-0.4
6,204,187	-		Pf6N2E2_5399	0.38	-0.2
6,204,225	+		Pf6N2E2_5399	0.43	+0.1
6,204,225	+		Pf6N2E2_5399	0.43	+0.4
6,204,225	+		Pf6N2E2_5399	0.43	+0.6
6,204,225	+		Pf6N2E2_5399	0.43	+0.2
6,204,225	+		Pf6N2E2_5399	0.43	+0.9
6,204,225	+		Pf6N2E2_5399	0.43	+0.2
6,204,225	+		Pf6N2E2_5399	0.43	+0.9
6,204,225	+		Pf6N2E2_5399	0.43	-0.8
6,204,226	-		Pf6N2E2_5399	0.43	+1.0
6,204,226	-		Pf6N2E2_5399	0.43	+1.0
6,204,226	-		Pf6N2E2_5399	0.43	+0.8
6,204,438	+		Pf6N2E2_5399	0.71	+0.9
6,204,438	+		Pf6N2E2_5399	0.71	+1.1
6,204,438	+		Pf6N2E2_5399	0.71	-0.0
6,204,439	-		Pf6N2E2_5399	0.71	+0.0
6,204,439	-		Pf6N2E2_5399	0.71	+1.0
6,204,439	-		Pf6N2E2_5399	0.71	+0.2
6,204,459	+		Pf6N2E2_5399	0.74	-0.1
6,204,460	-		Pf6N2E2_5399	0.74	-0.7
6,204,460	-		Pf6N2E2_5399	0.74	-0.3
6,204,489	+		Pf6N2E2_5399	0.77	-0.1
6,204,489	+		Pf6N2E2_5399	0.77	+0.7
6,204,490	-		Pf6N2E2_5399	0.78	-0.5
6,204,490	-		Pf6N2E2_5399	0.78	-0.2
6,204,645	+				+0.5
6,204,645	+				+0.0
6,204,645	+				+0.9
6,204,646	-				-0.4
6,204,646	-				-0.4
6,204,646	-				-0.8
6,204,646	-				-0.1
6,204,646	-				-0.3
6,204,776	+				-0.1
6,204,776	+				+0.7
6,204,777	-				-0.4
6,204,800	+				+0.8
6,204,800	+				+1.0
6,204,801	-				-0.2
6,204,801	-				-0.3
6,204,801	-				-0.0
6,204,826	+				+0.4
6,204,827	-				+0.7
6,204,827	-				-0.2
6,204,827	-				+0.8
6,204,827	-				+0.5
6,204,974	+		Pf6N2E2_5400	0.12	-0.2
6,204,974	+		Pf6N2E2_5400	0.12	+1.3
6,204,975	-		Pf6N2E2_5400	0.12	-0.1
6,204,975	-		Pf6N2E2_5400	0.12	-0.7
6,205,250	+		Pf6N2E2_5400	0.31	-0.2
6,205,250	+		Pf6N2E2_5400	0.31	-0.5
6,205,250	+		Pf6N2E2_5400	0.31	-0.0
6,205,250	+		Pf6N2E2_5400	0.31	-0.3
6,205,250	+		Pf6N2E2_5400	0.31	+0.1
6,205,262	+		Pf6N2E2_5400	0.31	-0.2
6,205,262	+		Pf6N2E2_5400	0.31	+0.2
6,205,262	+		Pf6N2E2_5400	0.31	+0.4
6,205,262	+		Pf6N2E2_5400	0.31	+0.3
6,205,262	+		Pf6N2E2_5400	0.31	+0.4
6,205,263	-		Pf6N2E2_5400	0.31	-0.0
6,205,263	-		Pf6N2E2_5400	0.31	+0.3
6,205,263	-		Pf6N2E2_5400	0.31	+0.5
6,205,263	-		Pf6N2E2_5400	0.31	-1.0
6,205,286	+		Pf6N2E2_5400	0.33	+0.5
6,205,286	+		Pf6N2E2_5400	0.33	+0.7
6,205,286	+		Pf6N2E2_5400	0.33	+0.2
6,205,286	+		Pf6N2E2_5400	0.33	-0.2
6,205,286	+		Pf6N2E2_5400	0.33	+0.2
6,205,286	+		Pf6N2E2_5400	0.33	-1.9
6,205,287	-		Pf6N2E2_5400	0.33	-0.2
6,205,287	-		Pf6N2E2_5400	0.33	-1.6
6,205,287	-		Pf6N2E2_5400	0.33	-0.4
6,205,287	-		Pf6N2E2_5400	0.33	-0.4
6,205,287	-		Pf6N2E2_5400	0.33	-0.4
6,205,287	-		Pf6N2E2_5400	0.33	+0.4
6,205,287	-		Pf6N2E2_5400	0.33	+0.4
6,205,287	-		Pf6N2E2_5400	0.33	+0.2
6,205,290	+		Pf6N2E2_5400	0.33	+1.2
6,205,290	+		Pf6N2E2_5400	0.33	+0.3
6,205,290	+		Pf6N2E2_5400	0.33	+0.2
6,205,290	+		Pf6N2E2_5400	0.33	+0.2
6,205,290	+		Pf6N2E2_5400	0.33	+0.9
6,205,290	+		Pf6N2E2_5400	0.33	-0.3
6,205,290	+		Pf6N2E2_5400	0.33	-0.3
6,205,290	+		Pf6N2E2_5400	0.33	+0.6
6,205,290	+		Pf6N2E2_5400	0.33	+1.4
6,205,290	+		Pf6N2E2_5400	0.33	+0.9
6,205,290	+		Pf6N2E2_5400	0.33	+0.5
6,205,290	+		Pf6N2E2_5400	0.33	+0.9
6,205,291	-		Pf6N2E2_5400	0.33	-0.4
6,205,291	-		Pf6N2E2_5400	0.33	+0.3
6,205,291	-		Pf6N2E2_5400	0.33	-0.2
6,205,291	-		Pf6N2E2_5400	0.33	-0.3
6,205,291	-		Pf6N2E2_5400	0.33	-0.1
6,205,291	-		Pf6N2E2_5400	0.33	-0.0
6,205,291	-		Pf6N2E2_5400	0.33	+0.2
6,205,291	-		Pf6N2E2_5400	0.33	+0.7
6,205,291	-		Pf6N2E2_5400	0.33	-0.2
6,205,291	-		Pf6N2E2_5400	0.33	+0.8
6,205,291	-		Pf6N2E2_5400	0.33	+0.6
6,205,291	-		Pf6N2E2_5400	0.33	-0.1
6,205,291	-		Pf6N2E2_5400	0.33	+0.2
6,205,291	-		Pf6N2E2_5400	0.33	+0.2
6,205,291	-		Pf6N2E2_5400	0.33	-1.1
6,205,291	-		Pf6N2E2_5400	0.33	+0.9
6,205,291	-		Pf6N2E2_5400	0.33	-0.6
6,205,291	-		Pf6N2E2_5400	0.33	+0.6
6,205,291	-		Pf6N2E2_5400	0.33	+0.7
6,205,291	-		Pf6N2E2_5400	0.33	+0.9
6,205,291	-		Pf6N2E2_5400	0.33	+0.5
6,205,291	-		Pf6N2E2_5400	0.33	+0.7
6,205,667	+		Pf6N2E2_5400	0.59	+0.5
6,205,667	+		Pf6N2E2_5400	0.59	-0.0
6,205,705	+		Pf6N2E2_5400	0.61	-0.2
6,205,754	+		Pf6N2E2_5400	0.65	+0.3
6,205,754	+		Pf6N2E2_5400	0.65	-0.3
6,205,754	+		Pf6N2E2_5400	0.65	+1.0
6,205,755	-		Pf6N2E2_5400	0.65	+0.1
6,205,755	-		Pf6N2E2_5400	0.65	+1.8
6,205,755	-		Pf6N2E2_5400	0.65	-0.3
6,205,755	-		Pf6N2E2_5400	0.65	-0.2
6,205,755	-		Pf6N2E2_5400	0.65	-0.3
6,205,755	-		Pf6N2E2_5400	0.65	-1.1
6,205,871	+		Pf6N2E2_5400	0.73	-0.2
6,205,990	+		Pf6N2E2_5400	0.81	+0.8
6,205,990	+		Pf6N2E2_5400	0.81	+0.6
6,205,991	-		Pf6N2E2_5400	0.81	-0.7
6,205,991	-		Pf6N2E2_5400	0.81	-0.2
6,206,297	+				+0.5
6,206,298	-				-0.0
6,206,312	-				-0.2
6,206,312	-				-0.7
6,206,425	+				-1.0
6,206,448	-		Pf6N2E2_5401	0.11	-1.8
6,206,482	+		Pf6N2E2_5401	0.16	-1.0
6,206,482	+		Pf6N2E2_5401	0.16	+0.6
6,206,482	+		Pf6N2E2_5401	0.16	-0.5
6,206,482	+		Pf6N2E2_5401	0.16	-0.8
6,206,483	-		Pf6N2E2_5401	0.17	-0.2
6,206,483	-		Pf6N2E2_5401	0.17	-2.8
6,206,483	-		Pf6N2E2_5401	0.17	-1.6
6,206,483	-		Pf6N2E2_5401	0.17	-2.5
6,206,486	+		Pf6N2E2_5401	0.17	+0.2
6,206,487	-		Pf6N2E2_5401	0.17	-2.0
6,206,487	-		Pf6N2E2_5401	0.17	-1.7
6,206,487	-		Pf6N2E2_5401	0.17	-2.4
6,206,487	-		Pf6N2E2_5401	0.17	-2.2
6,206,531	+		Pf6N2E2_5401	0.24	-0.4
6,206,531	+		Pf6N2E2_5401	0.24	-0.1
6,206,609	+		Pf6N2E2_5401	0.36	-0.4
6,206,609	+		Pf6N2E2_5401	0.36	-1.0
6,206,609	+		Pf6N2E2_5401	0.36	-1.2
6,206,609	+		Pf6N2E2_5401	0.36	-0.8
6,206,609	+		Pf6N2E2_5401	0.36	-2.1
6,206,609	+		Pf6N2E2_5401	0.36	-0.1
6,206,609	+		Pf6N2E2_5401	0.36	-0.9
6,206,610	-		Pf6N2E2_5401	0.36	-1.8
6,206,610	-		Pf6N2E2_5401	0.36	-1.4
6,206,610	-		Pf6N2E2_5401	0.36	-1.9
6,206,610	-		Pf6N2E2_5401	0.36	-2.2
6,206,613	+		Pf6N2E2_5401	0.36	+1.1
6,206,613	+		Pf6N2E2_5401	0.36	-0.1
6,206,613	+		Pf6N2E2_5401	0.36	-0.1
6,206,613	+		Pf6N2E2_5401	0.36	-0.9
6,206,614	-		Pf6N2E2_5401	0.37	-1.5
6,206,614	-		Pf6N2E2_5401	0.37	-1.1
6,206,614	-		Pf6N2E2_5401	0.37	-2.8
6,206,669	+		Pf6N2E2_5401	0.45	-0.7
6,206,669	+		Pf6N2E2_5401	0.45	-0.5
6,206,670	-		Pf6N2E2_5401	0.45	-2.3
6,206,670	-		Pf6N2E2_5401	0.45	-2.0
6,206,722	+		Pf6N2E2_5401	0.53	-0.5
6,206,828	+		Pf6N2E2_5401	0.69	+0.3
6,206,980	-				-1.0
6,207,076	+				+0.6
6,207,076	+				+0.0
6,207,076	+				+0.6
6,207,077	-				-2.1
6,207,101	+				-1.1
6,207,105	+				-1.0
6,207,105	+				+0.3
6,207,106	-				-2.4
6,207,106	-				-1.8
6,207,145	+				+0.4
6,207,192	-				-3.8
6,207,209	+				-0.3
6,207,210	-				-2.4
6,207,227	+				-0.0
6,207,227	+				-0.4
6,207,227	+				-0.5
6,207,227	+				+0.6
6,207,227	+				-0.9
6,207,228	-				-3.1