Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_715 and Pf1N1B4_716 are separated by 261 nucleotides Pf1N1B4_716 and Pf1N1B4_717 are separated by 27 nucleotides
Pf1N1B4_715 - Iron-regulated protein A precursor, at 814,643 to 815,986
_715
Pf1N1B4_716 - Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites, at 816,248 to 817,675
_716
Pf1N1B4_717 - Iron-regulated protein A precursor, at 817,703 to 818,767
_717
Position (kb) 816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.378 kb on + strand, within Pf1N1B4_715 at 815.379 kb on - strand, within Pf1N1B4_715 at 815.431 kb on + strand, within Pf1N1B4_715 at 815.460 kb on - strand at 815.460 kb on - strand, within Pf1N1B4_715 at 815.637 kb on - strand, within Pf1N1B4_715 at 815.656 kb on + strand, within Pf1N1B4_715 at 815.663 kb on + strand, within Pf1N1B4_715 at 815.664 kb on - strand, within Pf1N1B4_715 at 815.675 kb on + strand, within Pf1N1B4_715 at 815.676 kb on - strand, within Pf1N1B4_715 at 815.831 kb on + strand, within Pf1N1B4_715 at 816.006 kb on + strand at 816.007 kb on - strand at 816.207 kb on - strand at 816.645 kb on - strand, within Pf1N1B4_716 at 816.740 kb on - strand, within Pf1N1B4_716 at 817.093 kb on + strand, within Pf1N1B4_716 at 817.229 kb on + strand, within Pf1N1B4_716 at 817.229 kb on + strand, within Pf1N1B4_716 at 817.229 kb on + strand, within Pf1N1B4_716 at 817.231 kb on + strand, within Pf1N1B4_716 at 817.398 kb on - strand, within Pf1N1B4_716 at 817.673 kb on + strand at 817.676 kb on + strand at 817.677 kb on - strand at 817.823 kb on + strand, within Pf1N1B4_717 at 817.824 kb on - strand, within Pf1N1B4_717 at 818.101 kb on - strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.129 kb on + strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.130 kb on - strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.183 kb on + strand, within Pf1N1B4_717 at 818.184 kb on - strand, within Pf1N1B4_717 at 818.184 kb on - strand, within Pf1N1B4_717 at 818.184 kb on - strand, within Pf1N1B4_717 at 818.580 kb on - strand, within Pf1N1B4_717 at 818.672 kb on + strand at 818.672 kb on + strand at 818.672 kb on + strand at 818.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 815,378 + Pf1N1B4_715 0.55 +0.3 815,379 - Pf1N1B4_715 0.55 -0.9 815,431 + Pf1N1B4_715 0.59 -2.6 815,460 - -1.5 815,460 - Pf1N1B4_715 0.61 -1.5 815,637 - Pf1N1B4_715 0.74 +0.9 815,656 + Pf1N1B4_715 0.75 -0.5 815,663 + Pf1N1B4_715 0.76 -0.0 815,664 - Pf1N1B4_715 0.76 -0.3 815,675 + Pf1N1B4_715 0.77 -1.1 815,676 - Pf1N1B4_715 0.77 +0.1 815,831 + Pf1N1B4_715 0.88 -0.5 816,006 + +1.3 816,007 - +0.9 816,207 - -0.2 816,645 - Pf1N1B4_716 0.28 -0.2 816,740 - Pf1N1B4_716 0.34 -1.3 817,093 + Pf1N1B4_716 0.59 -1.5 817,229 + Pf1N1B4_716 0.69 -1.8 817,229 + Pf1N1B4_716 0.69 +0.3 817,229 + Pf1N1B4_716 0.69 -0.9 817,231 + Pf1N1B4_716 0.69 -1.1 817,398 - Pf1N1B4_716 0.81 -0.4 817,673 + -0.7 817,676 + +1.8 817,677 - -2.3 817,823 + Pf1N1B4_717 0.11 +0.4 817,824 - Pf1N1B4_717 0.11 -1.6 818,101 - Pf1N1B4_717 0.37 -0.0 818,129 + Pf1N1B4_717 0.40 -1.5 818,129 + Pf1N1B4_717 0.40 +0.5 818,129 + +1.3 818,129 + Pf1N1B4_717 0.40 +0.9 818,129 + Pf1N1B4_717 0.40 -0.2 818,129 + +1.3 818,129 + Pf1N1B4_717 0.40 -0.5 818,129 + Pf1N1B4_717 0.40 +0.1 818,129 + Pf1N1B4_717 0.40 +0.8 818,129 + Pf1N1B4_717 0.40 +0.7 818,130 - Pf1N1B4_717 0.40 -1.3 818,130 - Pf1N1B4_717 0.40 -0.5 818,130 - Pf1N1B4_717 0.40 -0.7 818,130 - Pf1N1B4_717 0.40 +0.3 818,130 - Pf1N1B4_717 0.40 -0.6 818,130 - Pf1N1B4_717 0.40 +1.0 818,130 - Pf1N1B4_717 0.40 -0.7 818,130 - Pf1N1B4_717 0.40 -1.0 818,183 + Pf1N1B4_717 0.45 +0.5 818,183 + Pf1N1B4_717 0.45 +0.1 818,183 + Pf1N1B4_717 0.45 +1.6 818,183 + Pf1N1B4_717 0.45 -0.3 818,184 - Pf1N1B4_717 0.45 -2.1 818,184 - Pf1N1B4_717 0.45 -0.7 818,184 - Pf1N1B4_717 0.45 +1.8 818,580 - Pf1N1B4_717 0.82 -0.7 818,672 + -1.3 818,672 + -1.3 818,672 + -0.1 818,672 + +1.0
Or see this region's nucleotide sequence